LOC118938279 (hsp70b)


Basic Information

Item Value
gene id LOC118938279
gene name hsp70b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36777934 ~ 36788050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940945.1
GGAAGCTGCGCTCTCTTGAGCAATGTATTCGGAGAGTTCGAGAAATGGCTAGAAATCATGAGTGCTATTTTTTAGGCAATGGGGGCGGTATATATTCTGGTGAAGTACATTCAGATTCAAACATCGACTCAACGAGAATACTAAAGGGAAAAGAAAGCAAGAAAAGAGAAGAGACACGTTCAACAGACCTCTACATTCATAAACTGCAACTAACTCCAAACCATCAAGATGTCATCAGCTAAAGGCCCGTCTATCGGCATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGTAAAGTGGAGATCATCGCCAACGACCAGGGCAACAGGACCACACCCAGCTATGTGGCCTTCACAGACACTGAGAGACTTATCGGAGACGCAGCAAAGAACCAGGTGGCCATGAACCCCAACAACACCGTTTTCGACGCCAAACGCCTGATTGGCCGAAAGTTCAACGATCAGGTCGTGCAAGCCGACATGAAGCACTGGCCCTTCAAGGTGGTCAGCGACGGAGGAAAGCCTAAAGTTCAGGTCGATTACAAAGGTGAGAACAAATGCTTCAACCCAGAGGAGATCTCCTCCATGGTCCTGGTGAAGATGAGGGAGATCGCTGAGGCTTACCTGGGCCAGAAGGTGTCCAATGCAGTCATCACAGTCCCTGCCTACTTCAACGATTCACAGAGACAGGCCACTAAGGACGCTGGAGTGATCGCTGGGCTGAATGTGCTGAGGATCATCAACGAGCCCACGGCGGCAGCCATCGCCTACGGCATGGACAAAGGCATGTCCAGGGAACGCAACGTCCTGATTTTTGACCTGGGTGGGGGCACTTTTGACGTGTCCATCCTGACCATCGAGGATGGGATCTTTGAGGTGAAGGCCACAGCTGGAGACACTCACCTGGGCGGGGAGGACTTTGACAACCGCCTGGTCAGTCACTTTGTGGAGGAGTTCAAGAGGAAACACAAGAAGGACATCAGCCAGAACAAGCGGGCTCTGAGGAGGCTGAGGACAGCCTGCGAGAGGGCCAAGAGAACACTGTCCTCCAGCTCCCAGGCCAGCATTGAGATTGACTCTCTTTTTGAGGGCATCGACTTCTACACCTCCATCACCAGGGCTCGTTTTGAGGAAATGTGTTCCGACCTCTTCAGGGGAACCCTGGAGCCTGTGGAGAAAGCCCTCGGGGATGCCAAGATGGACAAGGCCCAAATTCACGACGTCGTCCTGGTCGGAGGCTCCACCCGGATCCCCAAGGTCCAGAAGCTCCTGCAGGACTTTTTCAACGGCCGAGAGCTAAACAAGAGCATCAACCCAGACGAGGCGGTGGCCTACGGCGCTGCCATCCAGGCGGCCATCTTGTCTGGCGACAAGTCTGAGAACGTCCAGGACCTGCTGCTGCTGGATGTGGCTCCCCTGTCCCTGGGCATCGAAACCGCCGGAGGGGTCATGACCGCCCTGATCAAACGCAACACCACCATCCCATCCAAACAGACCCAGACCTTCACCACTTACTCCGACAACCAGCCCGGGGTCATGATCCAGGTctacgagggagagagagccatgaccaaggacaacaacctcctggGGAAGTTTGAGCTCTCTGGGATCCCCCCTGCCCCACGAGGAGTCCCTCAGATCGAGGTGACCTTTGACATCGACGCCAATGGCATTCTGAACGTATCAGCGGTGGACAAGAGCACGGGCAAAGAGAACAAGATCACCATCACCAACGACAAGGGCCGGCTCAGCAAAGAGGATATTGAGAGGATGGTGCAGGACGCTGACAAATACAAAGCTGAGGATGACGCACAGAGGGAGAAGATAGCTGCCAAGAACTCCCTGGAGTCGTACGCCTTCAATATGAAGAGCAGCGTGGAGGACGACAACATGAAAGGCAAGATCAGCCAGGAGGACAAAAAGAAAGTGGTGGACAGGTGCGACCAGACCATTTCCTGGTTGGAGAACAACCAGCTGGGCGACAAAGAGGAGTATGAGCATCAGCTAAAGGAGCTGGAGAAAGTATGCCAGCCTATCATTACCAAGCTGTACCAGCAGGGAGGGATGCCCACAGGTTGCTGTGGAGACCAGGCACGGACCAGCTCTGGTGACAGCTCCCAAGGCCCAACCATTGAAGAGATTGACTAATGTGAGGGATTTTTATAAAGGACTTTTCAAAATGCATTAGTATCACTGCATACAATTTACTATCCAGGAAATACTTTGTACTTGTAAAAACACACTGTACATCTGTTGCTTCATACCATATTGCATTGCTGGACattgcaaataaaatgtatttaaatatgt
>XM_036940946.1
ATTCAGATTCAAACATCGACTCAACGAGAATACTAAAGGGAAAAGAAAGCAAGAAAAGAGAAGAGATACGTTCATTCTCTACATTCATAAACTGCAACTAACTCCAAACCATCAAGATGTCATCAGCTAAAGGCCCGTCTATCGGCATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGTAAAGTGGAGATCATCGCCAACGACCAGGGCAACAGGACCACACCCAGCTATGTGGCCTTCACAGACACTGAGAGACTTATCGGAGACGCAGCAAAGAACCAGGTGGCCATGAACCCCAACAACACCGTTTTCGACGCCAAACGCCTGATTGGCCGAAAGTTCAACGATCAGGTCGTGCAAGCCGACATGAAGCACTGGCCCTTCAAGGTGGTCAGCGACGGAGGAAAGCCTAAAGTTCAGGTCGATTACAAAGGTGAGAACAAATGCTTCAACCCAGAGGAGATCTCCTCCATGGTCCTGGTGAAGATGAGGGAGATCGCTGAGGCTTACCTGGGCCAGAAGGTGTCCAATGCAGTCATCACAGTCCCTGCCTACTTCAACGATTCACAGAGACAGGCCACTAAGGACGCTGGAGTGATCGCTGGGCTGAATGTGCTGAGGATCATCAACGAGCCCACGGCGGCAGCCATCGCCTACGGCATGGACAAAGGCATGTCCAGGGAACGCAACGTCCTGATTTTTGACCTGGGTGGGGGCACTTTTGACGTGTCCATCCTGACCATCGAGGATGGGATCTTTGAGGTGAAGGCCACAGCTGGAGACACTCACCTGGGCGGGGAGGACTTTGACAACCGCCTGGTCAGTCACTTTGTGGAGGAGTTCAAGAGGAAACACAAGAAGGACATCAGCCAGAACAAGCGGGCTCTGAGGAGGCTGAGGACAGCCTGCGAGAGGGCCAAGAGAACACTGTCCTCCAGCTCCCAGGCCAGCATTGAGATTGACTCTCTTTTTGAGGGCATCGACTTCTACACCTCCATCACCAGGGCTCGTTTTGAGGAAATGTGTTCCGACCTCTTCAGGGGAACCCTGGAGCCTGTGGAGAAAGCCCTCGGGGATGCCAAGATGGACAAGGCCCAAATTCACGACGTCGTCCTGGTCGGAGGCTCCACCCGGATCCCCAAGGTCCAGAAGCTCCTGCAGGACTTTTTCAACGGCCGAGAGCTAAACAAGAGCATCAACCCAGACGAGGCGGTGGCCTACGGCGCTGCCATCCAGGCGGCCATCTTGTCTGGCGACAAGTCTGAGAACGTCCAGGACCTGCTGCTGCTGGATGTGGCTCCCCTGTCCCTGGGCATCGAAACCGCCGGAGGGGTCATGACCGCCCTGATCAAACGCAACACCACCATCCCATCCAAACAGACCCAGACCTTCACCACTTACTCCGACAACCAGCCCGGGGTCATGATCCAGGTctacgagggagagagagccatgaccaaggacaacaacctcctggGGAAGTTTGAGCTCTCTGGGATCCCCCCTGCCCCACGAGGAGTCCCTCAGATCGAGGTGACCTTTGACATCGACGCCAATGGCATTCTGAACGTATCAGCGGTGGACAAGAGCACGGGCAAAGAGAACAAGATCACCATCACCAACGACAAGGGCCGGCTCAGCAAAGAGGATATTGAGAGGATGGTGCAGGACGCTGACAAATACAAAGCTGAGGATGACGCACAGAGGGAGAAGATAGCTGCCAAGAACTCCCTGGAGTCGTACGCCTTCAATATGAAGAGCAGCGTGGAGGACGACAACATGAAAGGCAAGATCAGCCAGGAGGACAAAAAGAAAGTGGTGGACAGGTGCGACCAGACCATTTCCTGGTTGGAGAACAACCAGCTGGGCGACAAAGAGGAGTATGAGCATCAGCTAAAGGAGCTGGAGAAAGTATGCCAGCCTATCATTACCAAGCTGTACCAGCAGGGAGGGATGCCCACAGGTTGCTGTGGAGACCAGGCACGGACCAGCTCTGGTGACAGCTCCCAAGGCCCAACCATTGAAGAGATTGACTAATGTGAGGGATTTTTATAAAGGACTTTTCAAAATGCATTAGTATCACTGCATACAATTTACTATCCAGGAAATACTTTGTACTTGTAAAAACACACTGTACATCTGTTGCTTCATACCATATTGCATTGCTGGACattgcaaataaaatgtatttaaatatg

Function

NR:

description
heat shock protein 70b

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0009408 response to heat biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0046686 response to cadmium ion biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03283 HSPA1s; heat shock 70kDa protein 1/2/6/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940945.1 False 2325 mRNA 0.53 2 36777934 36781055
XM_036940946.1 True 2212 mRNA 0.53 2 36777935 36788050

Neighbor

gene id symbol gene type direction distance location
LOC118938282 hsp70b coding downstream 3756 36770875 ~ 36774178 (-)
LOC118938277 hsp70b coding downstream 10625 36763981 ~ 36767309 (-)
LOC118938281 hsp70b coding downstream 17815 36757108 ~ 36760119 (-)
LOC118938280 hsp70b coding downstream 24597 36750225 ~ 36760370 (-)
LOC110512845 hsp70b coding downstream 31476 36743294 ~ 36746458 (-)
LOC110486257 hsp70b coding upstream 3860 36791910 ~ 36795238 (-)
LOC118938283 hsp70b coding upstream 10754 36798804 ~ 36802004 (-)
LOC118938284 hsp70b coding upstream 17803 36805853 ~ 36809163 (-)
LOC118938278 hsp70b coding upstream 23445 36811495 ~ 36814605 (-)
LOC118936524 hsp70b coding upstream 30319 36818369 ~ 36828427 (-)
G1171122 NA non-coding downstream 15917 36754229 ~ 36762017 (-)
G1171116 LOC106601019 non-coding downstream 43359 36733256 ~ 36734575 (-)
G1171101 LOC106607274 non-coding downstream 120837 36652759 ~ 36657097 (-)
G1171056 NA non-coding downstream 166887 36610764 ~ 36611047 (-)
G1171132 NA non-coding upstream 42870 36830920 ~ 36831206 (-)
G1171133 NA non-coding upstream 43206 36831256 ~ 36831589 (-)
G1171068 NA non-coding upstream 67827 36855877 ~ 36856985 (-)
LOC110485161 LOC106607288 non-coding upstream 69389 36857430 ~ 37073395 (-)
G1171139 NA non-coding upstream 79921 36867971 ~ 36868185 (-)
G1171051 NA other downstream 181293 36595832 ~ 36596641 (-)
G1171050 NA other downstream 183408 36594054 ~ 36594526 (-)
G1170998 NA other downstream 284410 36493089 ~ 36493524 (-)
G1170826 NA other downstream 667495 36110102 ~ 36110439 (-)
G1170811 NA other downstream 686517 36090762 ~ 36091417 (-)
G1171149 NA other upstream 95968 36884018 ~ 36884340 (-)
G1171337 NA other upstream 410178 37198228 ~ 37198640 (-)
LOC110486310 LOC106601114 other upstream 2392724 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 2460102 39248150 ~ 39250310 (-)
LOC110486318 kdm8 other upstream 2540166 39328216 ~ 39331966 (-)

Expression


Co-expression Network