LOC110486257 (hsp70b)


Basic Information

Item Value
gene id LOC110486257
gene name hsp70b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36791910 ~ 36795238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110486257
ATTTGCATACGCCTCGCAGCATGCGTCATTGCACAGGAATGCTGCGCTCTCTTGAGCAATGTAGTCGGAGAGTTCGAGAAATGGCTAGAAATCATGAGTGCTATTTTCTAGGCAATGGGGATGGTATATATTCTGGTACATTCAGTACCAGTACATTCAGATTCAAACATCGACTCAACGAGAATACTAAAGGGAAAAGAAAGCAAGAAAAGAGAAGAGATACGTTCAACAGACCTCTACATTCATAAACTGCAACTAACTACAAACCATCAAGATGTCATCAGCTAAAGGCCCGTCTATCGGCATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGTAAAGTGGAGATCATCGCCAACGACCAGGGCAACAGGACCACACCCAGCTATGTGGCCTTCACAGACACTGAGAGACTTATCGGAGACGCAGCAAAGAACCAGGTGGCCATGAACCCCAACAACACCGTTTTCGATGCCAAACGCCTGATTGGCCGAAAGTTCAACGATCAGGTCGTGCAAGCCGACATGAAGCACTGGCCCTTCAAGGTGGTCAGCGACGGAGGAAAGCCTAAAGTTCAGGTCGATTACAAAGGTGAGAACAAATGCTTCAACCCAGAGGAGATCTCCTCCATGGTCCTGGTGAAGATGAGGGAGATCGCTGAGGCTTACCTGGGCCAGAAGGTGTCCAATGCAGTCATCACAGTCCCTGCCTACTTCAACGATTCACAGAGATAGGCCACTAAGGACGCTGGAGTGATCGCTGGGCTGAATGTGCTGAGGATCATCAACGAGCCCACGGCGGCAGCCATCGCCTACGGCATGGACAAAGGCATGTCCAGGGAACGCAACGTCCTGATTTTTGACCTGGGTGGGGAAACCTTTGACGTGTCCATCCTGACCATCGAGGATGGGATCTTTGAGGTGAAGGCCACAGCTGGAGACACTCACCTGGGCGGGGAGGACTTTGACAACCGCCTGGTCAGTCACTTTGTGGAGGAGTTCAAGAGGAAACACAAGAAGGACATCAGCCAGAACAAGCGGGCTCTGAGGAGGCTGAGGACAGCCTGCGAGAGGGCCAAGAGAACACTGTCCTCCAGCTCCCAGGCCAGCATTGAGATTGACTCTCTTTTTGAGGGCATCGACTTCTACACCTCCATCACCAGGGCTCGTTTTGAGGAAATGTGTTCCGACCTCTTCAGGGGAACCCTGGAGCCTGTGGAGAAAGCCCTCGGGGATGCCAAGATGGACAAGGCCCAAATTCACGACGTCGTCCTGGTCGGAGGCTCCACCCGGATCCCCAAGGTCCAGAAGCTCCTGCAGGACTTTTTCAACGGCCGAGAGCTAAACAAGAGCATCAACCCAGACGAGGCGGTGGCCTACGGCGCTGCCATCCAGGCGGCCATCTTGTCTGGCGACAAGTCTGAGAACGTCCAGGACCTGCTGCTGCTGGATGTGGCTCCCCTGTCCCTGGGCATCGAAACCGCCGGAGGGGTCATGACCGCCCTGATCAAACTCAACACCACCATCCCATCCAAACAGACCCAGACCTTCACCACTTACTCCGACAACCAGCCCGGGGTCATGATCCAGGTctacgagggagagagagccatgaccaaggacaacaacctcctggGGAAGTTTGAGCTCTCTGGGATCCCCCCTGCCCCACGAGGAGTCCCTCAGATCGAGGTGACCTTTGACATCGACGCCAACGGCATTCTGAACGTATCAGCGGTGGACAAGAGCACGGGCAAAGAGAACAAGATCACCATCACCAACGACAAGGGCCGGCTCAGCAAAGAGGATATTGAGAGGATGGTGCAGGACGCTGACAAATACAAAGCTGAGGATGACGCACAGAGGGAGAAGATAGCTGCCAAGAACTCCCTGGAGTCGTACGCCTTCAATATGAAGAGCAGCGTGGAGGACGACAACATGAAAGGCAAGATCAGCCAGGAGGACAAAAAGAAAGTGGTGGACAGGTGCGACCAGACCATTTCCTGGTTGGAGAACAACCAGCTGGGCGACAAAGAGGAGTATGAGCATCAGCTAAAGGAGCTGGAGAAAGTATGCCAGCCTATCATTACCAAGCTGTACCAGCAGGGAGGGATGCCCACAGGTTGCTGTGGAGATCAGGCACGGACCAGCTCTGGTGACAGCTCCCAAGGCCCAACCATTGAAGAGATTGACTAAAGTGAGGGATTTTTATAAAGGACTTTTCAAAATGCATTAGTATCACTGCATACAATTTACTATTCAGGAAATACTTTGTACTTGTAAAAACACACTGTACATCTGTTGATTCATACCATATTGCATTGCTGGACattgcaaataaaatgtatttaaatatg

Function

NR:

description
heat shock protein 70b

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0009408 response to heat biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0046686 response to cadmium ion biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03283 HSPA1s; heat shock 70kDa protein 1/2/6/8

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110486257 True 2370 mRNA 0.52 2 36791910 36795238

Neighbor

gene id symbol gene type direction distance location
LOC118938279 hsp70b coding downstream 3860 36777934 ~ 36788050 (-)
hsp70b hsp70b coding downstream 3881 36784814 ~ 36788029 (-)
LOC118938282 hsp70b coding downstream 17732 36770875 ~ 36774178 (-)
LOC118938277 hsp70b coding downstream 24601 36763981 ~ 36767309 (-)
LOC118938281 hsp70b coding downstream 31791 36757108 ~ 36760119 (-)
LOC118938283 hsp70b coding upstream 3566 36798804 ~ 36802004 (-)
LOC118938284 hsp70b coding upstream 10615 36805853 ~ 36809163 (-)
LOC118938278 hsp70b coding upstream 16257 36811495 ~ 36814605 (-)
LOC118936524 hsp70b coding upstream 23131 36818369 ~ 36828427 (-)
LOC110485160 hsp70b coding upstream 29993 36825231 ~ 36828499 (-)
G1171122 NA non-coding downstream 29893 36754229 ~ 36762017 (-)
LOC118938280 hsp70b non-coding downstream 31540 36750225 ~ 36760370 (-)
G1171116 LOC106601019 non-coding downstream 57335 36733256 ~ 36734575 (-)
G1171101 LOC106607274 non-coding downstream 134813 36652759 ~ 36657097 (-)
G1171056 NA non-coding downstream 180863 36610764 ~ 36611047 (-)
G1171132 NA non-coding upstream 35682 36830920 ~ 36831206 (-)
G1171133 NA non-coding upstream 36018 36831256 ~ 36831589 (-)
G1171068 NA non-coding upstream 60639 36855877 ~ 36856985 (-)
LOC110485161 LOC106607288 non-coding upstream 62201 36857430 ~ 37073395 (-)
G1171139 NA non-coding upstream 72733 36867971 ~ 36868185 (-)
G1171051 NA other downstream 195269 36595832 ~ 36596641 (-)
G1171050 NA other downstream 197384 36594054 ~ 36594526 (-)
G1170998 NA other downstream 298386 36493089 ~ 36493524 (-)
G1170826 NA other downstream 681471 36110102 ~ 36110439 (-)
G1170811 NA other downstream 700493 36090762 ~ 36091417 (-)
G1171149 NA other upstream 88780 36884018 ~ 36884340 (-)
G1171337 NA other upstream 402990 37198228 ~ 37198640 (-)
LOC110486310 LOC106601114 other upstream 2385536 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 2452914 39248150 ~ 39250310 (-)
LOC110486318 kdm8 other upstream 2532978 39328216 ~ 39331966 (-)

Expression


Co-expression Network