LOC110485163 (LOC106607291)


Basic Information

Item Value
gene id LOC110485163
gene name LOC106607291
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 37115439 ~ 37120056 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940961.1
GTGTCAGTGGGGTGGAAATGTATCAGTGAAAACCCCTCTGTAACCTGGCCACAACGGACCATGGACATTGTCTGCTGCTGATCCCAAACATAGAGCTGCTTCAGAAACACTTGGACAAGGAGTTGTGTGTGTGGACCAATAGACCAGTAGGATGGCAGACTTTGGGCTGTATGAGTACCAGGAGGAAGTGGTTCAACGGGCTCTACGGGGGGAGAACATCATCATCTGGCTGCCCACTGGAGGAGGAAAGACACGTGCTGCTGTGTATGACAGACACTTCACAATAAGGAGTACCCATACCTGACACAGTAAAGCCCTGGAACCTAAGCTAACACACCTTAAAGACGGAGTTCACTCTGCTGATCATTGATGAGTGCCACCACACTCATAAGGAGGGTGTCTACAATAAGATCATGGGGGCGCTACGTGGCACAGAAGCTGAAGGGGGAGAGACTGCTGCCGCAGATCCTGGGCCTCACTGCCTCTCCTGGGACAGGGGGAGCCAAGAGCATCAAAGGAGCTGTGGACCATGTGCTGCagATTTGTGCCAACCTGGACTCAGTGATTGTGTCGTCCAAAGTGTACGCCCCTGAGCTGAAGAAAAAGGTCCCCAGACCCAGGAAAAGGTTTGACATCGTTGACAGAAGACCTCAGGACCCATTTGGGGATCACCTGAAGTTCATGATGCAGTTTATCCATGACTTCATGGCCTTAGGGCCTGACTTTCCTGTCAGGGAGTTTGGCACGCAGGAGTACGAGGCAGACGTGGTGATTCTGGAGAAGAAGGGTgtgacagacaggaacagactGCTGGCCCAGTGTGCTCTCCACCTGCGTCAGTACAACGACGCCCTGCTCATCAACGACACTGTGTGCATGGTGGATGCCTTTAGGGTCCTGGAGTCCTACTATAGTACCAAGACCTCCACTGCCACGGATGGAACCGACTTCTTCCTGCTTGGGCTCTACCAGGAGAACGAGGTGGAGCTGAGGAAACTGGCAGGCGATGCCCGGTTTGAAAACCCTAAGATGGGGAAGCTTCAGAACACCCTGCTGGAGCAGTTTGACCAGGGTGAACACTCCAGAGGGATCCTGTTCTCCAAGACCCGTAAAAGCACCCACTGCTTGTATGACTGGGTGTCCAACAACCCAGCACTGCAGCATGCTGGTATCAGGGCAGCCATTCTGACTGGCGCTGGCAATGGCACCAATTACATGACCCAGAATGAGCAGAAGGACACAATCCGCAACTTCCGCCTGGGCTCCCTCAACCTCCTGATCTCCACCAGCGTAGCCAAGGAGGGCCTGGACATCCCAGAATGCAACCTGGTGGTGCGCTACGGGCTGCTGACCAATGAGATCGCACAACAGCAGGCCAGTGGCCGGGCTCGGGCGAGTGACAGCGTTTACTCTGTGGTGGCCCAGGCGGGGGGGCGGGAGGTGCGTCGGGAACTCCTCAATGAATGTCTGGAGGACTTGACTGGCAGGGCCATCGGCGAAGTGCAGAGGATGGAGCCCAGGGAGTTCCAAATGAAGACCACTGATCTCCAGACAGAAACGTTGTTGACAAGACAGTTGGCAGAGCAGTTGAAGATCAAGAAGAGGAGTCGTTTCAGTGCTGCTACGGTTCAGCTCTCGTGTCGAGACTGTGTTGTGCCCGTGGCCTTTGGCAATGACATTAAAGTCATTGAAAACGCACACCATGTCAACATCAACCCGGACTTTGAGAAGTACTATAAGACCGGTGGGCAGCCCGCGCTGAAGACTTTTGAGGACTGGCAGCCAGGCCGTGTGATCAGCTGTGCTGCCTGTGGCAAGCAATGGGGAAGGGAAATGGTATATAAGGAGATTGCCCTGCTGCCCAGTCTGGCCATCGAGAACTTTGCTATGGAGACTCCGGAGGGAAGAAAATTAGCCAACAAGTGGAAGAAAGTTGAGTTTACAGTGGAGGAGTTTAACTTCAGCACGTACTGTCAAAACAGATTCCCTAACATGTTGGATTGATACGCTATTACACTGGAGGAAGGACTGTAACTGGGGGCTTTCATGGTGTTTCCACCTCGTACTGTTTTCACCTTTCCACTAaccttctcttcctttctctctctgtctgtcagtctgtgttgcTTAGTCTAGACTACCATTGTGTTACTTATGCATGATCCTGAAGTGTGTCATTGTcctattttctattttattccacctttatttaaccaggtaggctagttgagaacaagttctcatttacaactgcgacctggccaagataaagcaaagcagtgcgtcacaaacaacaacacagagttacac
>XM_036940962.1
GTGTCAGTGGGGTGGAAATGTATCAGTGAAAACCCCTCTGTAACCTGGCCACAACGGACCATGGACATTGTCTGCTGCTGATCCCAAACATAGAGCTGCTTCAGAAACACTTGGACAAGGAGTTGTGTGTGTGGACCAATAGACCAGTAGGATGGCAGACTTTGGGCTGTATGAGTACCAGGAGGAAGTGGTTCAACGGGCTCTACGGGGGGAGAACATCATCATCTGGCTGCCCACTGGAGGAGGAAAGACACGTGCTGCTGTAGTTCACTCTGCTGATCATTGATGAGTGCCACCACACTCATAAGGAGGGTGTCTACAATAAGATCATGGGGGCGCTACGTGGCACAGAAGCTGAAGGGGGAGAGACTGCTGCCGCAGATCCTGGGCCTCACTGCCTCTCCTGGGACAGGGGGAGCCAAGAGCATCAAAGGAGCTGTGGACCATGTGCTGCagATTTGTGCCAACCTGGACTCAGTGATTGTGTCGTCCAAAGTGTACGCCCCTGAGCTGAAGAAAAAGGTCCCCAGACCCAGGAAAAGGTTTGACATCGTTGACAGAAGACCTCAGGACCCATTTGGGGATCACCTGAAGTTCATGATGCAGTTTATCCATGACTTCATGGCCTTAGGGCCTGACTTTCCTGTCAGGGAGTTTGGCACGCAGGAGTACGAGGCAGACGTGGTGATTCTGGAGAAGAAGGGTgtgacagacaggaacagactGCTGGCCCAGTGTGCTCTCCACCTGCGTCAGTACAACGACGCCCTGCTCATCAACGACACTGTGTGCATGGTGGATGCCTTTAGGGTCCTGGAGTCCTACTATAGTACCAAGACCTCCACTGCCACGGATGGAACCGACTTCTTCCTGCTTGGGCTCTACCAGGAGAACGAGGTGGAGCTGAGGAAACTGGCAGGCGATGCCCGGTTTGAAAACCCTAAGATGGGGAAGCTTCAGAACACCCTGCTGGAGCAGTTTGACCAGGGTGAACACTCCAGAGGGATCCTGTTCTCCAAGACCCGTAAAAGCACCCACTGCTTGTATGACTGGGTGTCCAACAACCCAGCACTGCAGCATGCTGGTATCAGGGCAGCCATTCTGACTGGCGCTGGCAATGGCACCAATTACATGACCCAGAATGAGCAGAAGGACACAATCCGCAACTTCCGCCTGGGCTCCCTCAACCTCCTGATCTCCACCAGCGTAGCCAAGGAGGGCCTGGACATCCCAGAATGCAACCTGGTGGTGCGCTACGGGCTGCTGACCAATGAGATCGCACAACAGCAGGCCAGTGGCCGGGCTCGGGCGAGTGACAGCGTTTACTCTGTGGTGGCCCAGGCGGGGGGGCGGGAGGTGCGTCGGGAACTCCTCAATGAATGTCTGGAGGACTTGACTGGCAGGGCCATCGGCGAAGTGCAGAGGATGGAGCCCAGGGAGTTCCAAATGAAGACCACTGATCTCCAGACAGAAACGTTGTTGACAAGACAGTTGGCAGAGCAGTTGAAGATCAAGAAGAGGAGTCGTTTCAGTGCTGCTACGGTTCAGCTCTCGTGTCGAGACTGTGTTGTGCCCGTGGCCTTTGGCAATGACATTAAAGTCATTGAAAACGCACACCATGTCAACATCAACCCGGACTTTGAGAAGTACTATAAGACCGGTGGGCAGCCCGCGCTGAAGACTTTTGAGGACTGGCAGCCAGGCCGTGTGATCAGCTGTGCTGCCTGTGGCAAGCAATGGGGAAGGGAAATGGTATATAAGGAGATTGCCCTGCTGCCCAGTCTGGCCATCGAGAACTTTGCTATGGAGACTCCGGAGGGAAGAAAATTAGCCAACAAGTGGAAGAAAGTTGAGTTTACAGTGGAGGAGTTTAACTTCAGCACGTACTGTCAAAACAGATTCCCTAACATGTTGGATTGATACGCTATTACACTGGAGGAAGGACTGTAACTGGGGGCTTTCATGGTGTTTCCACCTCGTACTGTTTTCACCTTTCCACTAaccttctcttcctttctctctctgtctgtcagtctgtgttgcTTAGTCTAGACTACCATTGTGTTACTTATGCATGATCCTGAAGTGTGTCATTGTcctattttctattttattccacctttatttaaccaggtaggctagttgagaacaagttctcatttacaactgcgacctggccaagataaagcaaagcagtgcgtcacaaacaacaacacagagttacac
>XM_036940963.1
GTGTCAGTGGGGTGGAAATGTATCAGTGAAAACCCCTCTGTAACCTGGCCACAACGGACCATGGACATTGTCTGCTGCTGATCCCAAACATAGAGCTGCTTCAGAAACACTTGGACAAGGAGTTGTGTGTGTGGACCAATAGACCAGTAGGATGGCAGACTTTGGGCTGTATGAGTACCAGGAGGAAGTGGTTCAACGGGCTCTACGGGGGGAGAACATCATCATCTGGCTGCCCACTGGAGGAGGAAAGACACGTGCTGCTGTGTATGACAGACACTTCACAATAAGGAGTACCCATACCTGACACAAGTTCACTCTGCTGATCATTGATGAGTGCCACCACACTCATAAGGAGGGTGTCTACAATAAGATCATGGGGGCGCTACGTGGCACAGAAGCTGAAGGGGGAGAGACTGCTGCCGCAGATCCTGGGCCTCACTGCCTCTCCTGGGACAGGGGGAGCCAAGAGCATCAAAGGAGCTGTGGACCATGTGCTGCagATTTGTGCCAACCTGGACTCAGTGATTGTGTCGTCCAAAGTGTACGCCCCTGAGCTGAAGAAAAAGGTCCCCAGACCCAGGAAAAGGTTTGACATCGTTGACAGAAGACCTCAGGACCCATTTGGGGATCACCTGAAGTTCATGATGCAGTTTATCCATGACTTCATGGCCTTAGGGCCTGACTTTCCTGTCAGGGAGTTTGGCACGCAGGAGTACGAGGCAGACGTGGTGATTCTGGAGAAGAAGGGTgtgacagacaggaacagactGCTGGCCCAGTGTGCTCTCCACCTGCGTCAGTACAACGACGCCCTGCTCATCAACGACACTGTGTGCATGGTGGATGCCTTTAGGGTCCTGGAGTCCTACTATAGTACCAAGACCTCCACTGCCACGGATGGAACCGACTTCTTCCTGCTTGGGCTCTACCAGGAGAACGAGGTGGAGCTGAGGAAACTGGCAGGCGATGCCCGGTTTGAAAACCCTAAGATGGGGAAGCTTCAGAACACCCTGCTGGAGCAGTTTGACCAGGGTGAACACTCCAGAGGGATCCTGTTCTCCAAGACCCGTAAAAGCACCCACTGCTTGTATGACTGGGTGTCCAACAACCCAGCACTGCAGCATGCTGGTATCAGGGCAGCCATTCTGACTGGCGCTGGCAATGGCACCAATTACATGACCCAGAATGAGCAGAAGGACACAATCCGCAACTTCCGCCTGGGCTCCCTCAACCTCCTGATCTCCACCAGCGTAGCCAAGGAGGGCCTGGACATCCCAGAATGCAACCTGGTGGTGCGCTACGGGCTGCTGACCAATGAGATCGCACAACAGCAGGCCAGTGGCCGGGCTCGGGCGAGTGACAGCGTTTACTCTGTGGTGGCCCAGGCGGGGGGGCGGGAGGTGCGTCGGGAACTCCTCAATGAATGTCTGGAGGACTTGACTGGCAGGGCCATCGGCGAAGTGCAGAGGATGGAGCCCAGGGAGTTCCAAATGAAGACCACTGATCTCCAGACAGAAACGTTGTTGACAAGACAGTTGGCAGAGCAGTTGAAGATCAAGAAGAGGAGTCGTTTCAGTGCTGCTACGGTTCAGCTCTCGTGTCGAGACTGTGTTGTGCCCGTGGCCTTTGGCAATGACATTAAAGTCATTGAAAACGCACACCATGTCAACATCAACCCGGACTTTGAGAAGTACTATAAGACCGGTGGGCAGCCCGCGCTGAAGACTTTTGAGGACTGGCAGCCAGGCCGTGTGATCAGCTGTGCTGCCTGTGGCAAGCAATGGGGAAGGGAAATGGTATATAAGGAGATTGCCCTGCTGCCCAGTCTGGCCATCGAGAACTTTGCTATGGAGACTCCGGAGGGAAGAAAATTAGCCAACAAGTGGAAGAAAGTTGAGTTTACAGTGGAGGAGTTTAACTTCAGCACGTACTGTCAAAACAGATTCCCTAACATGTTGGATTGATACGCTATTACACTGGAGGAAGGACTGTAACTGGGGGCTTTCATGGTGTTTCCACCTCGTACTGTTTTCACCTTTCCACTAaccttctcttcctttctctctctgtctgtcagtctgtgttgcTTAGTCTAGACTACCATTGTGTTACTTATGCATGATCCTGAAGTGTGTCATTGTcctattttctattttattccacctttatttaaccaggtaggctagttgagaacaagttctcatttacaactgcgacctggccaagataaagcaaagcagtgcgtcacaaacaacaacacagagttacac

Function

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DHX58

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940961.1 False 2310 mRNA 0.52 11 37115439 37120056
XM_036940962.1 False 2226 mRNA 0.52 11 37115439 37120056
XM_036940963.1 True 2270 mRNA 0.52 11 37115439 37120056

Neighbor

gene id symbol gene type direction distance location
LOC110485161 LOC106607288 coding downstream 42044 36857430 ~ 37073395 (-)
LOC110486253 LOC106607285 coding downstream 263379 36840781 ~ 36852060 (-)
LOC110485160 hsp70b coding downstream 286940 36825231 ~ 36828499 (-)
LOC118936524 hsp70b coding downstream 287012 36818369 ~ 36828427 (-)
LOC118938278 hsp70b coding downstream 300834 36811495 ~ 36814605 (-)
LOC110486259 kat2a coding upstream 532 37120588 ~ 37133109 (-)
LOC110486260 LOC106601022 coding upstream 13763 37133819 ~ 37151534 (-)
LOC110485164 LOC106607293 coding upstream 32373 37152429 ~ 37182020 (-)
LOC110486261 LOC106601048 coding upstream 63725 37183781 ~ 37186986 (-)
LOC110486262 LOC106607294 coding upstream 70571 37190627 ~ 37284114 (-)
G1171296 NA non-coding downstream 8376 37106814 ~ 37107063 (-)
G1171293 NA non-coding downstream 13504 37101287 ~ 37101935 (-)
G1171241 NA non-coding downstream 70028 37039442 ~ 37045411 (-)
G1171184 NA non-coding downstream 169036 36946069 ~ 36946403 (-)
G1171325 NA non-coding upstream 59778 37179834 ~ 37180108 (-)
G1171330 NA non-coding upstream 67121 37187177 ~ 37187453 (-)
G1171331 NA non-coding upstream 67875 37187931 ~ 37188219 (-)
G1171418 NA non-coding upstream 305736 37425792 ~ 37426396 (-)
G1171423 NA non-coding upstream 315727 37435783 ~ 37495295 (-)
G1171149 NA other downstream 231099 36884018 ~ 36884340 (-)
G1171057 hsp70b other downstream 287014 36665169 ~ 36828425 (-)
G1171051 NA other downstream 518798 36595832 ~ 36596641 (-)
G1171050 NA other downstream 520913 36594054 ~ 36594526 (-)
G1170998 NA other downstream 621915 36493089 ~ 36493524 (-)
G1171337 NA other upstream 78172 37198228 ~ 37198640 (-)
LOC110486310 LOC106601114 other upstream 2060718 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 2128096 39248150 ~ 39250310 (-)
LOC110486318 kdm8 other upstream 2208160 39328216 ~ 39331966 (-)
G1173645 NA other upstream 2803866 39923922 ~ 39924959 (-)

Expression


Co-expression Network