LOC110486263 (LOC106607299)


Basic Information

Item Value
gene id LOC110486263
gene name LOC106607299
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 37426664 ~ 37455479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557716.2
TTGACTGGGTGGTATCACAGGGAGTCCCGTCATTTGAGTCAGGGCACACATGCCTCAGCAGTGAGAGGCTCCACTCCCGTTGGTTGGCCAGCATCCCAGGGTAGAcgcaaagacagagagagagagagagagagactgagaggactGAGAATAAGAGAAAAAGGAGGAAAAGAAAGACAGCAAGAAGACAAGTAGACTAGAAAGTGGGAAGAGGAAAAGCTCCAAAGAAGTGGAAGATCTATTTTTATCCTTAGTGAGCGTGAGAGCTGAGCGGTGTGTGTTTGGACTTGACAGCCATGGCGGATCCAGCAGGCTTGCAGCAGGAGCGAGTTGCTCTGACCGAGGTGTCTGACGACGAGGAGGTGTCCCTGGTAGCCGCAGCGGTCCAGCCCGCCACCGACAGCGATGAAGACGACATTTCAGAAGAAGTGGACCTGGTGCTGGCCACGGGCTCGGGCACCAAGAGTGAGGCGCAGATCAACGGGGTCATGGTGCTGACCCTGCTCGACAAGATCATCGGGGTGGTGGACCAGATCCAGCAGACCCAGAACGGGCTGGAGGCCAGACAGCAGGACATGGAGAAGTCTGTTTCTTGCATCCAGGGAGAGCTGGCCAAGCTGTCCAAGAGCCACACTGACACGGCCAACACCGTCAACAAGATGCTGGGCAAGGTGCGCAAGGTCAGCGTCAACGTGAAGACGGTCCGCACCAACCTGGAGAAGCAGGCGGGCCAGATCAAGAAGTTGGAGAGCAACGAGAACGAGCTGCTCAAGAGACGGCACTTCAAGGTTCTCATCTACCAGGATGAGAATAAGGCCGCTAAAGCCTCTCTAAAGTCGCCCAAGGTGGCAGAGAATGTAGCTGAGGGCTGCTCTGTGGAAGGGGGGCTGGAGCAGATCCCTGAGGAGGGGGGCGAGGCGGCGCTCACTGGCCTCAACTCAGACGAGGAGGTGGAGATCGAGGAGATCATCGAAGAGTCCCGGGCGGAGAAGATAAAACGCTCCAGCAAGGCGCGCGTGGACAACATCAAGAAGGCCTTCTCCAAAgagcagagggagaagagagcgcAGAAGACCAAGGACAACCTGGAAAAGACCAAGCAGAAGACCAGGGATAACCTGGAGAAGACCCGGCAGAAGACTCACGACAAGCTGGAGAAGACCAAGCATAGCCTGGAGAAGAAGATGGGCAAGCTGGGCAACAAGATGACCCCCAACATGGAGCGGAAGGAGAAGCTAAAGGGCTCCAAGGAGATGTTGAAGAAGTCTCTGACCCCCGACCACACCGTCTACGCCCGCTCCAAGACGACCGTGTACCGCGTGCCACCCTTCACCTTCCATGTGAAGAAGTTCCGGGATGGAGAGGTGGAAGTGGTGCACACAGAGGGcacagagatggaggaggtggcCGAGAATGAGGCCCTggaggcgggagagggagacgtggaggtggaggagctggTGAGAGTAGTAGACACCCCAGAGATGAGTGCTGTCCTGGAgttggatgaagaggaggaggagctggtgAGAGTAGACACCCCAGAGATGGCAGCTTTCCTGGAGGTGGCTGAGGACCAGGTGGCAGAGCATCTGATCAGGCTGGGGAGTAAGGTCCCTGTGGTGAAAACAAGCATGAAGACAACCAGCAAATAACTCTGTCTACAGGGCCCAGCAGGATTGGAAGAATGATACAATAGAGGGATGAGGAgataggggagaagagagagggggagagtaaaGAAGAGGAGAGTAACATCCTACATTTGGATGACAGTGACACAGCATGCATGATAAGGACTGTCGGGACAGTGTTCACAATCTACTCATCTTATAATAAAAATTATAATAACacaatatgccatttagcagacgcttttatccaacgCAACTTACAGTCATACGTGCCTACATACATCTTGTTTGAGAAGGAAAAAAATGACGCATCAGGAATTACTTTCAATGTAGTATGTGCTGTtctagacaacaacaacaacaaaacatttaaccCCGCAATTTTGTTTCTTCCTTACATATTTTCTTGTCTTTTAGTTTGTGAATGACTCTGGTTGGTCTAGTCTGGGATATTGCTTGTTGatataattttttgttgttgtttttgaaaTAGAATGACCACAATGCTAAGGGAATAAATAGTAGTTGCTATTGTGATTTGATGTACAATAATTGCTAACGTAGGATAAACAGTACATAACAATGTATATGGAAATAtcccccactgggcacagacgtcaattcaacatctattccacgttggttcaacgtaatttcattgaaatgatgtggaaacaaagttgattcagccagtgtgtgcccagttgtGGTGGTATCTTGAGATTTTCTGATTTGATGGTTGGTGGTCATGTGATGTGCAGGTCAGAGAAATTACGTTTTGACAAATGAAGAGAAAGAGCACACAGTGGAAACACCTAAAGATGGTTTCAACGTGCATGGGGAGAGACACAGGGGACCGTCTTTTCCTTGACTGAAGAGTTTACAGATCGGTTAAACAAATGCTCACAGCCATTTTGAGCAGCCAACTTTCTACTGTAAGTGTGGGCATCCAAGCTCTGTCAACATGTCAAGGTTCTGAAAGGACGAGATAGATAAGATAATGATAAAGATTAAGATAGTTCTCACTTTTCTTAGAGGAGCACTATGAAGCTTTTATTTCTGATCAACAGTGTGGCCCTATTGGTTGATTGTTTTCATTTTGGAGGACCGAGATGGAGGGTCACGGCAAATGCAATATTaaaaaagaagaggaagagactCACTGATTGGCATAAATGGAACTATTTTTGTGCGTGTGTAATGTTTCAGCCGCAATCTTGAGCCAAACAGGGAAAAACTAGTGTATCTTTAAATGATGTCATGGAGTTGATGGATGCCAGACGTGTAAAGTAATCCTCCTTTCACATAAAAAACAGGATCGCAACagatcctgtttgttttgttttgaaatGGAGAATGAGAAGGATGAAGGATTAGTGACGACTCGAAAGAGATGTGAATTTAGTTGCATAGTTTTACcttcctttaaaaaaaagaatgtcTCATTAAGTTTCTAAGTTGTACTATAGTGTGATATCTGGAAAATAGTTCTCCTTCTCTCAGTTTTTAGTTACCAGTGTAACCACCAAACTACCTGGTTGTTACTAGGGCTTGTCACTGATGACAGGAGAATGACATTTTGAGCCATCGTTTAATCAAAGTTTCCTAGTGCCATCGTTCTGTAGAAGTTCACTTTTTTCactgttttttctctctcactgtgcTTACATGATAATGTTCATTGTACTGACACACATTGTACAAATGTATGCACGTATGCTCACAGTGCTACAAGAAtcatacatgtactgtacatatatgcTATAATAAGCACAGACATACCTGTGTTAACCTGCCACGTTACTGTTACTCCAGAGGCTTCTCTCCTGGAAGAGGAGTCTGTCTGAGATTGACAGAGCCTTGCTTATTGAATCTATCACCATGGCCACAGCTAACGACAGGATATATCCAGCATTTCACCTGGACTGCACTGGGTGCTGTGATTGTGGGGAGAAAAATTAGAGAATCTTGTAGGAACCCCTTCAGCATATGTCAATATGCCAGGTGACAGTTTAATGAAAGTCTATAAGTGACATATAGAAATGTAAGTGCTATCCAATTTTGTTTGTGCCGGCAGCAAATTACAAGGGATTGTGAATAATGACATGGCAGTtacaaaggtggaagaaaaaaaGTAATATCCGTTCCTGGACCTCAGTCTCTGTCTATTTGAATTACTTGTCAgcttgtttgtgcctgtgtggtCTGGCAAGGGTCTGATATAGGGAGACGATGGTGATTAGAATGGATGATTTGAGTTTGACGTGAAGTGAGACCAGTAAATGCAATACAAGCTAAAAGCTGTTGTCTCGTGTTCTTTCTCTACCTACAAGACGTGCCTCTGGAGAACAAAGTAGTGAGACTAAGTACAGAAGGACTGAAAGCACACAGGGCCTGGCTCGAAGACAGCGCTACGGAAGGCTTTTCTACGTGTCTCCATAGCTCTCTGTGTCTGACCAACCTTGATGAAGGGGCCGGGGTAGAGAGGGGAGGTCTCTGTGGAACACCATTAGGATAATCAATGAGGCAGGAATCTGATTAAGGAGAGTGCTTTCTCTGAGGAGAGTGAGacggaacacagagagaggacgtgtgtgagagagaggggggagtggtcagtgcagagagaaggagagatgatgCAGTCAAAAAGAAACCAAAGATATTCCTCAAAAAATATGTAGGTCTTTGTGCAGTTCACATTTTGTTTTTACTTAATTTTTTTACAAGGCTGAAATGGATTCTCATTACATAAATGCCAAGGTGAATACTGAACACACAGATACATTAAAAATTGACCAAGTTTTTGTCAAACATGAGCTAAGTTTACCACCATCTCTAAACACCCCTCATCTCCCCCAAGGAGATTCATAGCATTTCCTACCTTCTTCAGGAGAGAGTGGAGATACAAACAGTGACCGCTCATCTTTCAACTGTTTAATTTATTTGCCATGTAGTGTAGTCTCACAGCATTGTCAGTCAATATGCAGTTCTTTGTAAGAAATGATCAGTCAAACTACCGCAGGTTACCAGGGTTGGAgccaattccatttaaattccagtaaattcagaaagtaaaccaaattgcAATTCCAAATGTTCCTAACTGAAAAGCATTTAAGATCATTGGAATTttagtgtacttcctgaattgtctGGAATTGAAATGCAACTGACCTCAAGCCTGCGGGATACTGTACGTATCCTGAGCACTGCCATTTTCAACTGACCTCAACCCTGCGGGATACTGTACGTATCCTGAGCACTGCCATTTTCAACTGAACTGAGATGATAATATCTCCGACTGATCTAATAACGAAGCTTGCTTTTTCTGTTGAATTAAATGACCATTTTTGTCAAACCACTTATATATCAATAAACGCTATATGATTTA
>XM_021557717.2
TTGACTGGGTGGTATCACAGGGAGTCCCGTCATTTGAGTCAGGGCACACATGCCTCAGCAGTGAGAGGCTCCACTCCCGTTGGTTGGCCAGCATCCCAGGGTAGAcgcaaagacagagagagagagagagagagactgagaggactGAGAATAAGAGAAAAAGGAGGAAAAGAAAGACAGCAAGAAGACAAGTAGACTAGAAAGTGGGAAGAGGAAAAGCTCCAAAGAAGTGGAAGACCATGGCGGATCCAGCAGGCTTGCAGCAGGAGCGAGTTGCTCTGACCGAGGTGTCTGACGACGAGGAGGTGTCCCTGGTAGCCGCAGCGGTCCAGCCCGCCACCGACAGCGATGAAGACGACATTTCAGAAGAAGTGGACCTGGTGCTGGCCACGGGCTCGGGCACCAAGAGTGAGGCGCAGATCAACGGGGTCATGGTGCTGACCCTGCTCGACAAGATCATCGGGGTGGTGGACCAGATCCAGCAGACCCAGAACGGGCTGGAGGCCAGACAGCAGGACATGGAGAAGTCTGTTTCTTGCATCCAGGGAGAGCTGGCCAAGCTGTCCAAGAGCCACACTGACACGGCCAACACCGTCAACAAGATGCTGGGCAAGGTGCGCAAGGTCAGCGTCAACGTGAAGACGGTCCGCACCAACCTGGAGAAGCAGGCGGGCCAGATCAAGAAGTTGGAGAGCAACGAGAACGAGCTGCTCAAGAGACGGCACTTCAAGGTTCTCATCTACCAGGATGAGAATAAGGCCGCTAAAGCCTCTCTAAAGTCGCCCAAGGTGGCAGAGAATGTAGCTGAGGGCTGCTCTGTGGAAGGGGGGCTGGAGCAGATCCCTGAGGAGGGGGGCGAGGCGGCGCTCACTGGCCTCAACTCAGACGAGGAGGTGGAGATCGAGGAGATCATCGAAGAGTCCCGGGCGGAGAAGATAAAACGCTCCAGCAAGGCGCGCGTGGACAACATCAAGAAGGCCTTCTCCAAAgagcagagggagaagagagcgcAGAAGACCAAGGACAACCTGGAAAAGACCAAGCAGAAGACCAGGGATAACCTGGAGAAGACCCGGCAGAAGACTCACGACAAGCTGGAGAAGACCAAGCATAGCCTGGAGAAGAAGATGGGCAAGCTGGGCAACAAGATGACCCCCAACATGGAGCGGAAGGAGAAGCTAAAGGGCTCCAAGGAGATGTTGAAGAAGTCTCTGACCCCCGACCACACCGTCTACGCCCGCTCCAAGACGACCGTGTACCGCGTGCCACCCTTCACCTTCCATGTGAAGAAGTTCCGGGATGGAGAGGTGGAAGTGGTGCACACAGAGGGcacagagatggaggaggtggcCGAGAATGAGGCCCTggaggcgggagagggagacgtggaggtggaggagctggTGAGAGTAGTAGACACCCCAGAGATGAGTGCTGTCCTGGAgttggatgaagaggaggaggagctggtgAGAGTAGACACCCCAGAGATGGCAGCTTTCCTGGAGGTGGCTGAGGACCAGGTGGCAGAGCATCTGATCAGGCTGGGGAGTAAGGTCCCTGTGGTGAAAACAAGCATGAAGACAACCAGCAAATAACTCTGTCTACAGGGCCCAGCAGGATTGGAAGAATGATACAATAGAGGGATGAGGAgataggggagaagagagagggggagagtaaaGAAGAGGAGAGTAACATCCTACATTTGGATGACAGTGACACAGCATGCATGATAAGGACTGTCGGGACAGTGTTCACAATCTACTCATCTTATAATAAAAATTATAATAACacaatatgccatttagcagacgcttttatccaacgCAACTTACAGTCATACGTGCCTACATACATCTTGTTTGAGAAGGAAAAAAATGACGCATCAGGAATTACTTTCAATGTAGTATGTGCTGTtctagacaacaacaacaacaaaacatttaaccCCGCAATTTTGTTTCTTCCTTACATATTTTCTTGTCTTTTAGTTTGTGAATGACTCTGGTTGGTCTAGTCTGGGATATTGCTTGTTGatataattttttgttgttgtttttgaaaTAGAATGACCACAATGCTAAGGGAATAAATAGTAGTTGCTATTGTGATTTGATGTACAATAATTGCTAACGTAGGATAAACAGTACATAACAATGTATATGGAAATAtcccccactgggcacagacgtcaattcaacatctattccacgttggttcaacgtaatttcattgaaatgatgtggaaacaaagttgattcagccagtgtgtgcccagttgtGGTGGTATCTTGAGATTTTCTGATTTGATGGTTGGTGGTCATGTGATGTGCAGGTCAGAGAAATTACGTTTTGACAAATGAAGAGAAAGAGCACACAGTGGAAACACCTAAAGATGGTTTCAACGTGCATGGGGAGAGACACAGGGGACCGTCTTTTCCTTGACTGAAGAGTTTACAGATCGGTTAAACAAATGCTCACAGCCATTTTGAGCAGCCAACTTTCTACTGTAAGTGTGGGCATCCAAGCTCTGTCAACATGTCAAGGTTCTGAAAGGACGAGATAGATAAGATAATGATAAAGATTAAGATAGTTCTCACTTTTCTTAGAGGAGCACTATGAAGCTTTTATTTCTGATCAACAGTGTGGCCCTATTGGTTGATTGTTTTCATTTTGGAGGACCGAGATGGAGGGTCACGGCAAATGCAATATTaaaaaagaagaggaagagactCACTGATTGGCATAAATGGAACTATTTTTGTGCGTGTGTAATGTTTCAGCCGCAATCTTGAGCCAAACAGGGAAAAACTAGTGTATCTTTAAATGATGTCATGGAGTTGATGGATGCCAGACGTGTAAAGTAATCCTCCTTTCACATAAAAAACAGGATCGCAACagatcctgtttgttttgttttgaaatGGAGAATGAGAAGGATGAAGGATTAGTGACGACTCGAAAGAGATGTGAATTTAGTTGCATAGTTTTACcttcctttaaaaaaaagaatgtcTCATTAAGTTTCTAAGTTGTACTATAGTGTGATATCTGGAAAATAGTTCTCCTTCTCTCAGTTTTTAGTTACCAGTGTAACCACCAAACTACCTGGTTGTTACTAGGGCTTGTCACTGATGACAGGAGAATGACATTTTGAGCCATCGTTTAATCAAAGTTTCCTAGTGCCATCGTTCTGTAGAAGTTCACTTTTTTCactgttttttctctctcactgtgcTTACATGATAATGTTCATTGTACTGACACACATTGTACAAATGTATGCACGTATGCTCACAGTGCTACAAGAAtcatacatgtactgtacatatatgcTATAATAAGCACAGACATACCTGTGTTAACCTGCCACGTTACTGTTACTCCAGAGGCTTCTCTCCTGGAAGAGGAGTCTGTCTGAGATTGACAGAGCCTTGCTTATTGAATCTATCACCATGGCCACAGCTAACGACAGGATATATCCAGCATTTCACCTGGACTGCACTGGGTGCTGTGATTGTGGGGAGAAAAATTAGAGAATCTTGTAGGAACCCCTTCAGCATATGTCAATATGCCAGGTGACAGTTTAATGAAAGTCTATAAGTGACATATAGAAATGTAAGTGCTATCCAATTTTGTTTGTGCCGGCAGCAAATTACAAGGGATTGTGAATAATGACATGGCAGTtacaaaggtggaagaaaaaaaGTAATATCCGTTCCTGGACCTCAGTCTCTGTCTATTTGAATTACTTGTCAgcttgtttgtgcctgtgtggtCTGGCAAGGGTCTGATATAGGGAGACGATGGTGATTAGAATGGATGATTTGAGTTTGACGTGAAGTGAGACCAGTAAATGCAATACAAGCTAAAAGCTGTTGTCTCGTGTTCTTTCTCTACCTACAAGACGTGCCTCTGGAGAACAAAGTAGTGAGACTAAGTACAGAAGGACTGAAAGCACACAGGGCCTGGCTCGAAGACAGCGCTACGGAAGGCTTTTCTACGTGTCTCCATAGCTCTCTGTGTCTGACCAACCTTGATGAAGGGGCCGGGGTAGAGAGGGGAGGTCTCTGTGGAACACCATTAGGATAATCAATGAGGCAGGAATCTGATTAAGGAGAGTGCTTTCTCTGAGGAGAGTGAGacggaacacagagagaggacgtgtgtgagagagaggggggagtggtcagtgcagagagaaggagagatgatgCAGTCAAAAAGAAACCAAAGATATTCCTCAAAAAATATGTAGGTCTTTGTGCAGTTCACATTTTGTTTTTACTTAATTTTTTTACAAGGCTGAAATGGATTCTCATTACATAAATGCCAAGGTGAATACTGAACACACAGATACATTAAAAATTGACCAAGTTTTTGTCAAACATGAGCTAAGTTTACCACCATCTCTAAACACCCCTCATCTCCCCCAAGGAGATTCATAGCATTTCCTACCTTCTTCAGGAGAGAGTGGAGATACAAACAGTGACCGCTCATCTTTCAACTGTTTAATTTATTTGCCATGTAGTGTAGTCTCACAGCATTGTCAGTCAATATGCAGTTCTTTGTAAGAAATGATCAGTCAAACTACCGCAGGTTACCAGGGTTGGAgccaattccatttaaattccagtaaattcagaaagtaaaccaaattgcAATTCCAAATGTTCCTAACTGAAAAGCATTTAAGATCATTGGAATTttagtgtacttcctgaattgtctGGAATTGAAATGCAACTGACCTCAAGCCTGCGGGATACTGTACGTATCCTGAGCACTGCCATTTTCAACTGACCTCAACCCTGCGGGATACTGTACGTATCCTGAGCACTGCCATTTTCAACTGAACTGAGATGATAATATCTCCGACTGATCTAATAACGAAGCTTGCTTTTTCTGTTGAATTAAATGACCATTTTTGTCAAACCACTTATATATCAATAAACGCTATATGATTTA

Function

NR:

description
polymerase I and transcript release factor-like

GO: NA

KEGG:

id description
K19387 PTRF; polymerase I and transcript release factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557716.2 False 5028 mRNA 0.45 3 37426664 37455479
XM_021557717.2 True 4971 mRNA 0.45 3 37426664 37455479

Neighbor

gene id symbol gene type direction distance location
rbtstat3 LOC106607297 coding downstream 1248 37398223 ~ 37425416 (-)
stat5 stat5 coding downstream 31363 37293710 ~ 37395301 (-)
LOC110486262 LOC106607294 coding downstream 142550 37190627 ~ 37284114 (-)
LOC110486261 LOC106601048 coding downstream 239678 37183781 ~ 37186986 (-)
LOC110485164 LOC106607293 coding downstream 244644 37152429 ~ 37182020 (-)
LOC110486265 LOC106601029 coding upstream 31021 37486500 ~ 37502910 (-)
LOC110486267 LOC106607302 coding upstream 133469 37588948 ~ 37604528 (-)
LOC110486268 LOC106607304 coding upstream 153785 37609264 ~ 37617259 (-)
LOC110485166 LOC106607305 coding upstream 173023 37628502 ~ 37631611 (-)
LOC110486270 LOC106601037 coding upstream 191618 37647097 ~ 37651150 (-)
G1171418 NA non-coding downstream 268 37425792 ~ 37426396 (-)
G1171331 NA non-coding downstream 238445 37187931 ~ 37188219 (-)
G1171330 NA non-coding downstream 239211 37187177 ~ 37187453 (-)
G1171325 NA non-coding downstream 246556 37179834 ~ 37180108 (-)
G1171296 NA non-coding downstream 319601 37106814 ~ 37107063 (-)
G1171454 NA non-coding upstream 22813 37478292 ~ 37479491 (-)
G1171475 NA non-coding upstream 62647 37518126 ~ 37520420 (-)
G1171493 NA non-coding upstream 89321 37544800 ~ 37545171 (-)
G1171494 NA non-coding upstream 90769 37546248 ~ 37546459 (-)
G1171514 NA non-coding upstream 119294 37574773 ~ 37575012 (-)
G1171337 NA other downstream 228024 37198228 ~ 37198640 (-)
G1171149 NA other downstream 542324 36884018 ~ 36884340 (-)
G1171057 hsp70b other downstream 598239 36665169 ~ 36828425 (-)
G1171051 NA other downstream 830023 36595832 ~ 36596641 (-)
G1171050 NA other downstream 832138 36594054 ~ 36594526 (-)
LOC110486310 LOC106601114 other upstream 1725295 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 1792673 39248150 ~ 39250310 (-)
LOC110486318 kdm8 other upstream 1872737 39328216 ~ 39331966 (-)
G1173645 NA other upstream 2468443 39923922 ~ 39924959 (-)
G1174658 NA other upstream 2860639 40316118 ~ 40316859 (-)

Expression


Co-expression Network