LOC110485165 (LOC106600980)


Basic Information

Item Value
gene id LOC110485165
gene name LOC106600980
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 37618087 ~ 37619016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556229.1
ATGGAGTCTTTCACCCACATATCCCAGGGCCTGTCTCACACCTCCATCCTCCTCATAGTGGTGGGCATCATAGTCTCCCTGCTGGCCTTCCTGGGTAGCATTGGGGCGTGGTCTGACAGCCGTCTGCTCCTTGGATTGTTCACACACTTCCTAATGCTGATCCTCAGCCTGCAGATAGTGTCTGGGATTCTTTTCTATGTCTTCAGAAACCAGGTGGAGAGAAGGATCACCCTGAAAGTTAACGAGGCGATCATGCAGCACAGCCCCAGAGATAAGGTTGCCATCGATGACCTACAACATGCATTTCGTTGTTGTGGTGCAGAGAACTACACTGACTGGCTCCTGCAGGGCTCTCATGAGAATATTAGTTTTGTGTCACACTCCTGTTGCCATGCGGATTCTGTGGCCTGTGTGAATGTCGTCACCACAGACATGTTAACCAGCACAGGGAAGTGCGAGGGGGTTACAAAGGCCTTAGATGAGGTTAACAGAAAGGTGATCATGATTCCCTACATGGAAATTTCTGTGACAATGATGAGAGGTTTTAAGGGCCCTAAAGAGTAA

Function

NR:

description
CD63 antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556229.1 True 564 mRNA 0.49 4 37618087 37619016

Neighbor

gene id symbol gene type direction distance location
LOC110486266 LOC106607393 coding upstream 31925 37580748 ~ 37586162 (+)
LOC110487538 LOC106607392 coding upstream 50360 37565631 ~ 37567727 (+)
LOC110486264 LOC106601026 coding upstream 138587 37458234 ~ 37479500 (+)
LOC118938285 NA coding upstream 439485 37177506 ~ 37178602 (+)
LOC110486255 LOC106607286 coding upstream 763374 36850070 ~ 36854713 (+)
LOC110485168 LOC106601036 coding downstream 19958 37638974 ~ 37646678 (+)
trnaa-ugc-60 NA coding downstream 132790 37751806 ~ 37751880 (+)
LOC110486272 LOC106601040 coding downstream 222644 37841660 ~ 37844391 (+)
LOC110486274 LOC106607311 coding downstream 225711 37844727 ~ 37847523 (+)
LOC110486275 NA coding downstream 236754 37855770 ~ 37859817 (+)
G1170008 NA non-coding upstream 796 37617081 ~ 37617291 (+)
G1170007 NA non-coding upstream 1262 37615921 ~ 37616825 (+)
G1169999 NA non-coding upstream 38051 37579822 ~ 37580036 (+)
G1169997 NA non-coding upstream 39752 37578129 ~ 37578335 (+)
G1169976 NA non-coding upstream 71573 37546302 ~ 37546514 (+)
G1170022 NA non-coding downstream 29476 37648492 ~ 37651141 (+)
G1170030 NA non-coding downstream 104651 37723667 ~ 37841104 (+)
G1170095 NA non-coding downstream 162825 37781841 ~ 37788036 (+)
G1170141 NA non-coding downstream 245123 37864139 ~ 37864399 (+)
G1170142 NA non-coding downstream 245707 37864723 ~ 37865336 (+)
G1169468 hsp70b other upstream 798547 36743291 ~ 36819540 (+)
G1169472 NA other upstream 805886 36784812 ~ 36812201 (+)
G1169476 NA other upstream 818119 36791911 ~ 36799968 (+)
G1169542 NA other upstream 914351 36702272 ~ 36703736 (+)
G1169532 LOC106607276 other upstream 946684 36670359 ~ 36671403 (+)
G1170195 NA other downstream 402833 38021849 ~ 38022521 (+)
G1170288 NA other downstream 590219 38209235 ~ 38209521 (+)
G1170322 NA other downstream 643398 38262414 ~ 38262853 (+)
G1170455 NA other downstream 970756 38589772 ~ 38590707 (+)

Expression


Co-expression Network