LOC110486270 (LOC106601037)


Basic Information

Item Value
gene id LOC110486270
gene name LOC106601037
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 37647097 ~ 37651150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557728.2
GCGATACACGCGGAGAGTTGTAGGGTGTGGATGTGGAAGACCCCGAACGGCCAAGATGGCGGCGTCCATGGCAGATGCCGGGGAGTTTGAGAAGTGGCTGGATGATCGGCTAGACTCCTTAGAAGTGGACCAGGAGGTGTATGGAGCTTATATTTTAGGAATACTTCAAGAGGAGGAGAGTGACGAAGAGAAGGAGGACGCACTGCTAGGAATTCTATCTGCGTTTTTGGAGGATGAGAAACTTGAAGATGTCTGCAAAGAGATCATTAGTCAGTGGGCTGAGAGCTGTGCCCGGTCGGCAACCAAAAACAAGGAGGATGctGAGGTACTGGCCATTGCCAATCTGATAGAGAAGCAGGCACAGATTGTGGTGAAACAGAAGGAAGTATCTCAGGAGTCCAGGAAGAGGAAAGAAGCTAAAGAAGCAGTCCTGGCTCAATATGCCAATATCACCGATGATGAGGATGAAGCTGAAGAGGAGGAGCAGGCTTTCCCCCCCAGTGGTGATAAATGTATCCTGTCTACGCCTCTTATTGCTCCTCCGATAACTcctattgaggaaaaatCCCTGTTTAAGAACACCAACGTGGAGGAGGTTCTAAGCAggaagaaacagcagagggaccaGGCTAAGGAAGATTCGCATAAGAAGAAAGAGACGGACAAGATGCAGCGCGAGAAGGATAAACTAGCGAGGCAGGACAGGAAGGACAAGGAGAAGAAACGCACACAGAAAGGGGAACGCAAAAGATGAGAAAAACAAATGACACTTTGGGACATTGTCACATGAAATGCTTTGTTactggacaaaaaaaatgaaatcaaCATCTATTTTTACCTATCCCTTATTACCACCCATACGATTGTAACATGACGCTGTAACAACTTGTCTGGACATGAATTATTTTAACCAATTACCGTTTTAGTTTTCTATAGATTTCAATCATCAAGCTTTATCTAAAGCTGGGAAGCGGTCCATCTATCTACAATGTGTTCTTTCTCCTCAACTGTGATGAATAAAGTAAATCAGTGactctatgaaaagccaactttAATAGTCTATCTCTACTTGCTATGATCAACCTGCACAAGCGATGTTTCGGTATCATTGCTGTCCCTGCCTCCTTTTCAATATGCCTCTACTAATGGGGAGACTGCCGGAAAATTAATAGTCATTCAATAGATGTAGCATGCAAGCCTTCACTCTAAAACTGTTTGCCCCGTTTAAGTAATAATTTTCCaagataaatgtttttaaatggcATTCAAATGTTCTGCAATTACTATAGGGGATATTGTAGTAAAAGGAATGGGAAGTGCCCTATGGGATCTTAACTCACTCAGATTGAGGAACTGCTAGTATGTGCCAATGTGTTGCAAATGCTTTTCCTCTTTGGAGACGGATTCTCTCAAGGCTCACACTCAAATCATTGTCATATTAAATACATTCAGTTTGGCACCCCGGTCTTCATGTACTGTCTATGCACTCTCTTGTATGAGAATCAGAACAATGTGGAGGTTGATACTGTATACCTCGATTATATCATATACAATGTTTGCAGAATGGCAATGGGGTTCATTTTTAACATCTTTTTTGAATAAATAAATGCCATTTTAAA
>XM_021557729.2
GCGATACACGCGGAGAGTTGTAGGGTGTGGATGTGGAAGACCCCGAACGGCCAAGATGGCGGCGTCCATGGCAGATGCCGGGGAGTTTGAGAAGTGGCTGGATGATCGGCTAGACTCCTTAGAAGTGGACCAGGAGGTGTATGGAGCTTATATTTTAGGAATACTTCAAGAGGAGGAGAGTGACGAAGAGAAGGAGGACGCACTGCTAGGAATTCTATCTGCGTTTTTGGAGGATGAGAAACTTGAAGATGTCTGCAAAGAGATCATTAGTCAGTGGGCTGAGAGCTGTGCCCGGTCGGCAACCAAAAACAAGGAGGATGctGAGGTACTGGCCATTGCCAATCTGATAGAGAAGCAGGCACAGATTGTGGTGAAACAGAAGGAAGTATCTCAGGAGTCCAGGAAGAGGAAAGAAGCTAAAGAAGCAGTCCTGGCTCAATATGCCAATATCACCGATGATGAGGATGAAGCTGAAGAGGAGGAGCAGGCTTTCCCCCCCAGTGGTGATAAATCCCTGTTTAAGAACACCAACGTGGAGGAGGTTCTAAGCAggaagaaacagcagagggaccaGGCTAAGGAAGATTCGCATAAGAAGAAAGAGACGGACAAGATGCAGCGCGAGAAGGATAAACTAGCGAGGCAGGACAGGAAGGACAAGGAGAAGAAACGCACACAGAAAGGGGAACGCAAAAGATGAGAAAAACAAATGACACTTTGGGACATTGTCACATGAAATGCTTTGTTactggacaaaaaaaatgaaatcaaCATCTATTTTTACCTATCCCTTATTACCACCCATACGATTGTAACATGACGCTGTAACAACTTGTCTGGACATGAATTATTTTAACCAATTACCGTTTTAGTTTTCTATAGATTTCAATCATCAAGCTTTATCTAAAGCTGGGAAGCGGTCCATCTATCTACAATGTGTTCTTTCTCCTCAACTGTGATGAATAAAGTAAATCAGTGactctatgaaaagccaactttAATAGTCTATCTCTACTTGCTATGATCAACCTGCACAAGCGATGTTTCGGTATCATTGCTGTCCCTGCCTCCTTTTCAATATGCCTCTACTAATGGGGAGACTGCCGGAAAATTAATAGTCATTCAATAGATGTAGCATGCAAGCCTTCACTCTAAAACTGTTTGCCCCGTTTAAGTAATAATTTTCCaagataaatgtttttaaatggcATTCAAATGTTCTGCAATTACTATAGGGGATATTGTAGTAAAAGGAATGGGAAGTGCCCTATGGGATCTTAACTCACTCAGATTGAGGAACTGCTAGTATGTGCCAATGTGTTGCAAATGCTTTTCCTCTTTGGAGACGGATTCTCTCAAGGCTCACACTCAAATCATTGTCATATTAAATACATTCAGTTTGGCACCCCGGTCTTCATGTACTGTCTATGCACTCTCTTGTATGAGAATCAGAACAATGTGGAGGTTGATACTGTATACCTCGATTATATCATATACAATGTTTGCAGAATGGCAATGGGGTTCATTTTTAACATCTTTTTTGAATAAATAAATGCCATTTTAAA

Function

NR:

description
coiled-coil domain-containing protein 43-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557728.2 False 1619 mRNA 0.42 5 37647097 37651150
XM_021557729.2 True 1565 mRNA 0.42 5 37647097 37651150

Neighbor

gene id symbol gene type direction distance location
LOC110485166 LOC106607305 coding downstream 15486 37628502 ~ 37631611 (-)
LOC110486268 LOC106607304 coding downstream 29838 37609264 ~ 37617259 (-)
LOC110486267 LOC106607302 coding downstream 42569 37588948 ~ 37604528 (-)
LOC110486265 LOC106601029 coding downstream 144187 37486500 ~ 37502910 (-)
LOC110486263 LOC106607299 coding downstream 191618 37426664 ~ 37455479 (-)
LOC110486271 LOC106607308 coding upstream 97455 37748605 ~ 37771147 (-)
LOC110486276 LOC106601043 coding upstream 218524 37869674 ~ 37874854 (-)
LOC110485169 LOC106607314 coding upstream 252943 37904093 ~ 37939039 (-)
LOC110486284 LOC106601139 coding upstream 354786 38005936 ~ 38022314 (-)
LOC110486285 LOC106607319 coding upstream 392893 38043339 ~ 38052087 (-)
G1171531 NA non-coding downstream 20744 37626119 ~ 37626353 (-)
G1171526 NA non-coding downstream 27135 37619629 ~ 37619962 (-)
G1171523 NA non-coding downstream 31530 37615281 ~ 37615567 (-)
G1171488 NA non-coding downstream 40681 37605564 ~ 37606416 (-)
G1171519 NA non-coding downstream 48648 37597955 ~ 37598449 (-)
G1171581 NA non-coding upstream 77316 37728466 ~ 37735769 (-)
G1171644 LOC106601042 non-coding upstream 195284 37846434 ~ 37847693 (-)
G1171659 NA non-coding upstream 213956 37865106 ~ 37865805 (-)
G1171663 NA non-coding upstream 217439 37868589 ~ 37869588 (-)
G1171671 NA non-coding upstream 248468 37899618 ~ 37899934 (-)
G1171337 NA other downstream 448457 37198228 ~ 37198640 (-)
G1171149 NA other downstream 762757 36884018 ~ 36884340 (-)
G1171057 hsp70b other downstream 818672 36665169 ~ 36828425 (-)
G1171051 NA other downstream 1050456 36595832 ~ 36596641 (-)
G1171050 NA other downstream 1052571 36594054 ~ 36594526 (-)
LOC110486310 LOC106601114 other upstream 1529624 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 1597002 39248150 ~ 39250310 (-)
LOC110486318 kdm8 other upstream 1677066 39328216 ~ 39331966 (-)
G1173645 NA other upstream 2272772 39923922 ~ 39924959 (-)
G1174658 NA other upstream 2664968 40316118 ~ 40316859 (-)

Expression


Co-expression Network