LOC110486271 (LOC106607308)


Basic Information

Item Value
gene id LOC110486271
gene name LOC106607308
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 37748605 ~ 37771147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557730.2
CTGAGAATCCGTcaccacaaacacaccacacgtACGCACGCGGACTCTATGActactctctccgtctctctttctcacactcactctctgtTCGTCCTCTTACCATTCCTCTTGTTTCTCTCTAACACTCCTCCTCCTGAGTGTTCCTTCCTTTgcatcctctttctttctcctttttCATGCCAAGAGTTTGGGACTAAATTTTGTATGTCGGCTCGTGTGTGCTCCCTATGTGCGTCAGTGTGCACGCTGGTGAGTGAGAGTGTACGGGAACTACCTCTGTGTGAGTGAAAGCAGCGAGGCATATCAGTGAGTGTATGTgggtctctctcttaccctcacACACTCGCCGCTCCTCCTCCTACTCTACTTGGGATCCCCGTGTCCCTTTCCTCTGTGGCAGGCTCCCCACACCCAGCAGTCACCATTTCCGCCCCAGGGAGAGCCACGCTGGCAGCACAGCCCCTTCCCCGACTCAGCATCGGGAGGAAGACCCTGGTGGCGGCTGCCGTCGGGGTCATGCTGGTCCTGGTGCTGGTGGTCCTCATCCCCGTTCTGGTCAGCTCCGTGGGCACCGACACCAGCCACTTTGAAATGCTGGGTACCTGCCGCATGGTGTGTGACCCCTACCTGaacaagggcacaacggccagcAGCACCAGCTCCAGTGGCATCCAGGCAGAAGCCGAGGCCCTCAGCGACAACAGCAACATGCCCTCCACGCTGGTGCAGGGCCCCCAGGGCAAGCAAGGCAGGCCAGGTAAACCTGGACTCCCGGGACCGCCTGGAGAGCCAGGGCCACCGGGGCCAGTGGGACCCCCTGGAGACCGAGGGTCTGGAGGGAGGACTGGGATTTTGGGGTTGGGGGGGAACGGAGCTATCAGCACGGCCACCTACAGCACAGTGCCCCGGGTGGCCTTTTACGCAGGGCTTAAGAACCCCCATGAAGGCTATGAGATCCTCAAGTTTGACGACGTGGTCACCAACTTGGGAAACAACTATGACGGCATCTCAGGCAAGTTCATCTGCAGCATCCCTGGCACCTACTTCTTCATCTACCATGTGCTAATGAGAGGTGGGGATGGGACCAGTATGTGGGCAGACCTCTGCAAAAACGAACAGgTGCGAGCCAGCGCCATCGCCCAGGACGCTGACCAGAACTATGACTACGCCTCCAATAGCGTCATCCTCCACCTAGACGCAGGCGACGAGGTCTACATCAAGCTGGACGGGGGCAAGGCTCACGgcggcaacaacaacaaatacagCACCTTCTCTGGGTTCATCCTCTACGCCGACTGAACCCGCGCAGGTGCCacgtccagagagagaaagacaagaaagtaagagattgagagaaagagtTCTAATGAGGGAAGGAGGGGGTTAAAAGCCAGAATGCTTTCTAGTTTCCTGGTTCTCTCCATCGTCACACCAACCTCTGCTTATAAAACACATCAGCCCTAAATCAAGGTTCTCCAGCTCAGCTTGGCCTGCCTGTCTGCCGtgctgtgagggagggagggagaacacgATGATAGGGGAGGGAGTAGTGGGGGGTGAAGCTTGGTAGAGAGAGGTGCCCTCCTCATCAGAATTCTATCCTGTCAGTTGCTCCTCGCTTTCTGAATATTTCTCCTCCTCAAACTGGAAAATAAACCAACTAACGCCAAGTGGATCCGGCCTCATCATCTTCTCTCCATAACAGTTGGCTATATGGACTCTGTTGACTGAAATTGTCCTATCTTGTGGTTGTGTGCTTTTCCTTAGAATATCAGTATTTTACTTTTGTGAAAGATACTACTGCATCGTATATTTACACAAAAGAGGATATTAAAAATACGTTTATCCCTTGTTTATCCCTAAAAAAAAACTTGATTTTGAGAGAACGGTTTTGTGAGATGTTGATTGTGATTTCCGAAGCCTTCAGTTGAGAAACGGTAATGAAAAGGTGCCATTATGGTTTCTGAAGATGATTCTAATAATGATTTCTTGCATTTGACACCTGGCTATCACATGGTGTTTATTTATGTGTGATGTCAGCTGTGGGAACACAGACCTGGTTTGTGGCTGAATGTTATTCATGCAAGGCATGTTATACAGATACAACATGACATTTTCCCTTGTCCCATCCAACGCATCTAGAGTCTCTATCCTTGCCCCTTGTCCCGTCTCTATACCCTTATCCTATTTGTCTATACAGGGCCAAAGTGGGTTGAGAATAGACTCAAATGAATATTAGATGTTCTAGTTATGTAGATATCCTTCACCACCAGAATCGTTCAATGAAGCCACATATTCCGATTCGGAGGTAACCCATTTTATAAAACAACAGTGTCCATTACTTCAGCTTCGTCCTCGAGCACTCTGCGGTGGTGAAGTAAAAAATATCAAGCAGagcaaggagggagagggagagggagagagagagagagagagagggagggagagagagagggagagagagagaga

Function

NR:

description
C1q-related factor-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K23284 C1QL; C1q-related factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557730.2 True 2472 mRNA 0.51 2 37748605 37771147

Neighbor

gene id symbol gene type direction distance location
LOC110486270 LOC106601037 coding downstream 97455 37647097 ~ 37651150 (-)
LOC110485166 LOC106607305 coding downstream 116994 37628502 ~ 37631611 (-)
LOC110486268 LOC106607304 coding downstream 131346 37609264 ~ 37617259 (-)
LOC110486267 LOC106607302 coding downstream 144077 37588948 ~ 37604528 (-)
LOC110486265 LOC106601029 coding downstream 245695 37486500 ~ 37502910 (-)
LOC110486276 LOC106601043 coding upstream 98527 37869674 ~ 37874854 (-)
LOC110485169 LOC106607314 coding upstream 132946 37904093 ~ 37939039 (-)
LOC110486284 LOC106601139 coding upstream 234789 38005936 ~ 38022314 (-)
LOC110486285 LOC106607319 coding upstream 272896 38043339 ~ 38052087 (-)
LOC110486281 LOC106601133 coding upstream 306178 38077325 ~ 38133730 (-)
G1171581 NA non-coding downstream 12836 37728466 ~ 37735769 (-)
G1171531 NA non-coding downstream 122252 37626119 ~ 37626353 (-)
G1171526 NA non-coding downstream 128643 37619629 ~ 37619962 (-)
G1171523 NA non-coding downstream 133038 37615281 ~ 37615567 (-)
G1171488 NA non-coding downstream 142189 37605564 ~ 37606416 (-)
G1171644 LOC106601042 non-coding upstream 75287 37846434 ~ 37847693 (-)
G1171659 NA non-coding upstream 93959 37865106 ~ 37865805 (-)
G1171663 NA non-coding upstream 97442 37868589 ~ 37869588 (-)
G1171671 NA non-coding upstream 128471 37899618 ~ 37899934 (-)
G1171720 LOC106607318 non-coding upstream 257948 38029095 ~ 38034875 (-)
G1171337 NA other downstream 549965 37198228 ~ 37198640 (-)
G1171149 NA other downstream 864265 36884018 ~ 36884340 (-)
G1171057 hsp70b other downstream 920180 36665169 ~ 36828425 (-)
G1171051 NA other downstream 1151964 36595832 ~ 36596641 (-)
G1171050 NA other downstream 1154079 36594054 ~ 36594526 (-)
LOC110486310 LOC106601114 other upstream 1409627 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 1477005 39248150 ~ 39250310 (-)
LOC110486318 kdm8 other upstream 1557069 39328216 ~ 39331966 (-)
G1173645 NA other upstream 2152775 39923922 ~ 39924959 (-)
G1174658 NA other upstream 2544971 40316118 ~ 40316859 (-)

Expression


Co-expression Network