Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110486299 |
| gene name | nudt1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 38577130 ~ 38579308 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| nudt1 | Enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides. Predicted to act upstream of or within DNA repair. Orthologous to human NUDT1 (nudix hydrolase 1). |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0006281 | DNA repair | biological_process |
| GO:0008413 | 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110486299 | True | 1223 | mRNA | 0.43 | 4 | 38577130 | 38579308 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486297 | LOC106601124 | coding | downstream | 25324 | 38490118 ~ 38551806 (-) |
| LOC110486295 | LOC106607327 | coding | downstream | 156869 | 38411240 ~ 38420261 (-) |
| LOC110486294 | LOC106607327 | coding | downstream | 177807 | 38390883 ~ 38399323 (-) |
| LOC110486290 | LOC106601128 | coding | downstream | 211981 | 38327857 ~ 38365149 (-) |
| LOC110486288 | LOC105013206 | coding | downstream | 273287 | 38292212 ~ 38303843 (-) |
| LOC110486300 | elfn1 | coding | upstream | 133393 | 38712701 ~ 38807558 (-) |
| LOC110486304 | LOC106607337 | coding | upstream | 335819 | 38915127 ~ 38928959 (-) |
| LOC110486307 | LOC106601117 | coding | upstream | 485856 | 39065164 ~ 39071223 (-) |
| LOC110486310 | LOC106601114 | coding | upstream | 557612 | 39136920 ~ 39183852 (-) |
| LOC110486311 | LOC106601151 | coding | upstream | 640771 | 39220079 ~ 39223322 (-) |
| G1172004 | snx8 | non-coding | downstream | 6894 | 38568937 ~ 38570236 (-) |
| G1171992 | NA | non-coding | downstream | 23474 | 38553393 ~ 38553656 (-) |
| G1171957 | NA | non-coding | downstream | 90591 | 38486182 ~ 38486539 (-) |
| G1171954 | NA | non-coding | downstream | 95031 | 38480535 ~ 38482099 (-) |
| G1171951 | LOC106607332 | non-coding | downstream | 101858 | 38474438 ~ 38475272 (-) |
| G1172013 | NA | non-coding | upstream | 11873 | 38591181 ~ 38591608 (-) |
| G1172014 | NA | non-coding | upstream | 12687 | 38591995 ~ 38592204 (-) |
| G1172015 | NA | non-coding | upstream | 13388 | 38592696 ~ 38593234 (-) |
| G1172017 | NA | non-coding | upstream | 15992 | 38595300 ~ 38595508 (-) |
| G1172024 | NA | non-coding | upstream | 19943 | 38599251 ~ 38599669 (-) |
| G1171337 | NA | other | downstream | 1378490 | 37198228 ~ 37198640 (-) |
| G1171149 | NA | other | downstream | 1692790 | 36884018 ~ 36884340 (-) |
| G1171057 | hsp70b | other | downstream | 1748705 | 36665169 ~ 36828425 (-) |
| G1171051 | NA | other | downstream | 1980489 | 36595832 ~ 36596641 (-) |
| G1171050 | NA | other | downstream | 1982604 | 36594054 ~ 36594526 (-) |
| LOC110486313 | snn | other | upstream | 668844 | 39248150 ~ 39250310 (-) |
| LOC110486318 | kdm8 | other | upstream | 748908 | 39328216 ~ 39331966 (-) |
| G1173645 | NA | other | upstream | 1344614 | 39923922 ~ 39924959 (-) |
| G1174658 | NA | other | upstream | 1736810 | 40316118 ~ 40316859 (-) |
