LOC110486304 (LOC106607337)


Basic Information

Item Value
gene id LOC110486304
gene name LOC106607337
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 38915127 ~ 38928959 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557789.2
TTGTTGTATCTTGTTCGAGAAAGTGCAGCTCAAAGCGCTGGATGGAATATTTGGCCTAAATTGTTTAGCTGGCAGAATTTTGCGTCAGCAGCACAGTGAGCTAAATATACCCAGCAGTGTTAAATAAGGGCATGTAGCAGCTCAGGAAAGCCCAGTGTAATACGAGCCAGACGAGCAGACACAAGTCCGAAACCAAATAGAGTACATTGTCTCACTACAAAAATACACCCATGACTGGAAGGGAAACTATTCCTCTGTGACATGCGATCTTCCGGAATTTCCCACATATCTACAGGACTGTAAAGTTCAGTATGACCATAAATTGTGACGTCTGTGGGATTCTGGCCAGTTTATGCATGCAGGGTATGACGACTCAGTTTAAAGGAAACAAGACTTTAAAGGTTAAGAAGGAGGTGGGTGAGAATGCTCCGGCCCTCTGTGATGACGAGCTGGTGGCCATGTCGGTGCGTGAGCTCAACACACACCTGCGTGGGCTGACCAAGGAGGATGTGGTGCGGCTGAAGCAGCGGCGGAGGACCCTGAAGAACCGGGGCTACGCCGCCAGCTGCCGCATCAAGCGGGTCACCCAGAAGGAGGAGCTGGAGAGGCAGAAGCAGGATCTGCAACAGGAGGTAGACAAGCTGGCCCGGGAGAACGCCAGCATGAGGCTGGAGCTGGACGCCCTGCGCGCCAAGTATGAGGCCCTGCAGTGCTTTGCCCGGACTGTCACCTGCGGGCCTCTCTCACCAGGCAAGGTGGCCACCACCAgtgtcatcaccatcatcaagtCTACAAACAACCACAACTCCAGCCCAACCTCCTTCTCAGCTCCCTCCTAGTTGTGACAGAACTGAGCTCTCGTCTCCCCGTCCTTACCTGTTTCGACCCGATCCAGCCTGAAACCAATTGCACCTGACCCAtgctgagaggaagctcagtaaTTAGACTGAGGGAAGGGGGTGGGGTGGCCACTAGCTCTGTGTGATGataacaacatgatgctgcattcattctctactctctttctctcacatatTGTACACAATCTACATTGTCTGTGCACTGTGCTACAACCGCCCCAGCACCGGCCGGGCATTGggcctctctgaccctctctccttGACTGATGGCAGAGATTAGCTCATACTACAGTGTGAGTGGATACTTGATATTATACCCCGCGATGGCAGCACTGGTCTGAGACAGCTCTGATGCCTGTGGTATCTTGCATTTACAGAGTATAAAGTAATATATATTATTGTAATAATTACCGTattaatacattataaacatttaaaataacaaacaaacaaatgctGATCTAAGCCTAAAAGCCTTCTTTCTTCTGTATATGAAAGCATATACTAATGTCACAATGAAAATTGAGGCATTGAAGCTTTTGCCTTAAACTGATCTCGGAATGATCTCTCAGTaatattcattttttttgtcactcTCATAAAGTATGTTCAATATTTTAAGCTTTAATATTTCCAATTTCAAGGGCAGCTTGAAAACTGACCAAGCATGTTTAGCTGGATGAACCAGGCCCTTTTGACATTGGAAAACTTTATCTGGTTTAGACTGTAGATTAGACTTGCAGGTATATAGCATTATAGCATAGCCTACATAAAAGAATACAAACATACTCATGGGTTATCCTCCTTACAGCTGTGAGGAACTAAATCTACAGTACAAGTCAAATACAAATTAGGCTACATCCGACAAATGACAGATCATTGAACGGCACTTACTATTAAACTGTTAGATCGCGGTGTAAAAGTACCAACCTCACTTGGTTTGCAAATGTTAAATCATATAGCTGCAAATTTACACCTAAAATCATAGGACACCTGAAGCATCTTTTTGGGAAATACCGCAGTCCATTCGTGTATTACTTTAGCAATGGGAGATTGTATGATGCTGATCATAGTTTGTGGTCTATCCCAGAATTGCTAAAGTTGCAGCTAGTTTATAACTATTGCCAAGGGTGGCATATTTATTTTATGATAATAAGACAAGCACTTACCTACGATCTTTTGCCTCTGAACTTTCCTCCCCATGCTATGCCATATTTCATGGTAGGTAATCCATATTGGATGTAGTGATAATGGGAGCTGCCTTGACAAAATGAAATGCAATTCAATGAATTCCTGTATATTACAGACTTAAGCTAGACCCTCTATTTTAGTTTCAATGCAAGATAAGGAAAATGGAAGATCAACTGCCTCCTGTCACTTTACATTGAGAACTCTGCCCTCTTAGAAATCATTCCTACTGTTGGATTGTCTGAAAGTGCTGCTGCCGGTGTTGGTAACTCTCTGAAACAGTAGACATTGAACACAAGTGCTTTCGACACAGACTCTTGGGTAAGAGGAATCCCGGCATAAAACTCaagagaaaaaaaactctagGAATGGTGTCACGACCAAATCCAAGTGTTACCCATAAACAAGCACAGGTTAAGTATGCTTTTTGAAGGGTCTAAGTTTCAGTTCTAGATAATTATCTAGAATCTATAGTTTTTGCATTTCAGCCCTTATCGAAGTTAGTCACGAGTGAAGTCTAGAGTTGGCTCTTGTCAAGGTTTTCTCTTACCCTAGTGTACATGATTTTTCCTCTTCCCCTGTTTCTTAGCTGTAAAGATCACGAAGGGGGACTTTGCTGCTGCATGGCCCTCTGCTATTTCAGGCAGGGCCATTGCTGTGCTCTTATCATTCTCATCTTGTGTTTTCATTTGGTATATTTGTTATTACACTTTAATTCCCATGTcttttatatatgtgtgtgtatttttctATAATTGTTGCTTTATTATAGGTATATTAAATACCTGGGAGTGGTGTGATCTTGTAATCGTCCCCTGACGTAAAATTATTCTTATTTTCTGGCCTATCTCAGCAGGATAGTTCAATTATTATCTATAGCATCGATTAAATCATAAGGAATCTATTCTGCTGACTTTATAGTTGTATTTGTGTCTTCTTAATGTCAGTTCATAAATATTACCTGCAAACTACCCTCGGCTAGTCTGCAAATTAGGCTGTCTGTGTTTACAGTCATGCCTGTTTTAGAGTAGGTGGATTGGGTATATTTTGATAGGAAAGACTTACTTTGGTAGCTAATTGCCATATGCCCACATGCTATTATAAGGAAGATACGTTTGTATCACATTGCTAAACTCCAAGACTTTCGAAGTTTGAGTTGATGCTTTTGTGACAGCTATGAAACAGATACAAGTATTACAATTTGGAGGAGAATATACAGCAGAATGCAAGTTATGAAATTACAGGTGAGGTGAAAACACTTGAATTATTTAGCACCCTTTTCTGAGCTTTACAGTGACCTCTGCTGGTACATGCTGTGAATAAGCACATTATTATTGATCAAATTGTTTTGGAGACTTTTGCAGTCCACTTGCATATCAATTTATAAAACTTTTATGCGTTAGTTATTGCTTTCAATTTCATTCAATTCTGTTCTAAACAAAGCCACAATACTGTCTGACTCAAATTTGAGTGCAAACATATACTTTTGTGTCAAAATAAACATCTAACGAAGTAGATGCA
>XM_021557790.2
CGTAAATACTTGCGGAAGCACGAAGTGGAATGTTGatacattgttgttgttgttttgtagttaATTTAGTACGTGGACACATTTCGGTTCGACTGCTGGACTACTTTCAGAATTGCGACAAGTAACTTCAACCCGTATAGGACGGAAACTTCACAAGCTTTACCGAACGAGAATATCCGCATTCACAAGTGTGACGTCTGTGGGATTCTGGCCAGTTTATGCATGCAGGGTATGACGACTCAGTTTAAAGGAAACAAGACTTTAAAGGTTAAGAAGGAGGTGGGTGAGAATGCTCCGGCCCTCTGTGATGACGAGCTGGTGGCCATGTCGGTGCGTGAGCTCAACACACACCTGCGTGGGCTGACCAAGGAGGATGTGGTGCGGCTGAAGCAGCGGCGGAGGACCCTGAAGAACCGGGGCTACGCCGCCAGCTGCCGCATCAAGCGGGTCACCCAGAAGGAGGAGCTGGAGAGGCAGAAGCAGGATCTGCAACAGGAGGTAGACAAGCTGGCCCGGGAGAACGCCAGCATGAGGCTGGAGCTGGACGCCCTGCGCGCCAAGTATGAGGCCCTGCAGTGCTTTGCCCGGACTGTCACCTGCGGGCCTCTCTCACCAGGCAAGGTGGCCACCACCAgtgtcatcaccatcatcaagtCTACAAACAACCACAACTCCAGCCCAACCTCCTTCTCAGCTCCCTCCTAGTTGTGACAGAACTGAGCTCTCGTCTCCCCGTCCTTACCTGTTTCGACCCGATCCAGCCTGAAACCAATTGCACCTGACCCAtgctgagaggaagctcagtaaTTAGACTGAGGGAAGGGGGTGGGGTGGCCACTAGCTCTGTGTGATGataacaacatgatgctgcattcattctctactctctttctctcacatatTGTACACAATCTACATTGTCTGTGCACTGTGCTACAACCGCCCCAGCACCGGCCGGGCATTGggcctctctgaccctctctccttGACTGATGGCAGAGATTAGCTCATACTACAGTGTGAGTGGATACTTGATATTATACCCCGCGATGGCAGCACTGGTCTGAGACAGCTCTGATGCCTGTGGTATCTTGCATTTACAGAGTATAAAGTAATATATATTATTGTAATAATTACCGTattaatacattataaacatttaaaataacaaacaaacaaatgctGATCTAAGCCTAAAAGCCTTCTTTCTTCTGTATATGAAAGCATATACTAATGTCACAATGAAAATTGAGGCATTGAAGCTTTTGCCTTAAACTGATCTCGGAATGATCTCTCAGTaatattcattttttttgtcactcTCATAAAGTATGTTCAATATTTTAAGCTTTAATATTTCCAATTTCAAGGGCAGCTTGAAAACTGACCAAGCATGTTTAGCTGGATGAACCAGGCCCTTTTGACATTGGAAAACTTTATCTGGTTTAGACTGTAGATTAGACTTGCAGGTATATAGCATTATAGCATAGCCTACATAAAAGAATACAAACATACTCATGGGTTATCCTCCTTACAGCTGTGAGGAACTAAATCTACAGTACAAGTCAAATACAAATTAGGCTACATCCGACAAATGACAGATCATTGAACGGCACTTACTATTAAACTGTTAGATCGCGGTGTAAAAGTACCAACCTCACTTGGTTTGCAAATGTTAAATCATATAGCTGCAAATTTACACCTAAAATCATAGGACACCTGAAGCATCTTTTTGGGAAATACCGCAGTCCATTCGTGTATTACTTTAGCAATGGGAGATTGTATGATGCTGATCATAGTTTGTGGTCTATCCCAGAATTGCTAAAGTTGCAGCTAGTTTATAACTATTGCCAAGGGTGGCATATTTATTTTATGATAATAAGACAAGCACTTACCTACGATCTTTTGCCTCTGAACTTTCCTCCCCATGCTATGCCATATTTCATGGTAGGTAATCCATATTGGATGTAGTGATAATGGGAGCTGCCTTGACAAAATGAAATGCAATTCAATGAATTCCTGTATATTACAGACTTAAGCTAGACCCTCTATTTTAGTTTCAATGCAAGATAAGGAAAATGGAAGATCAACTGCCTCCTGTCACTTTACATTGAGAACTCTGCCCTCTTAGAAATCATTCCTACTGTTGGATTGTCTGAAAGTGCTGCTGCCGGTGTTGGTAACTCTCTGAAACAGTAGACATTGAACACAAGTGCTTTCGACACAGACTCTTGGGTAAGAGGAATCCCGGCATAAAACTCaagagaaaaaaaactctagGAATGGTGTCACGACCAAATCCAAGTGTTACCCATAAACAAGCACAGGTTAAGTATGCTTTTTGAAGGGTCTAAGTTTCAGTTCTAGATAATTATCTAGAATCTATAGTTTTTGCATTTCAGCCCTTATCGAAGTTAGTCACGAGTGAAGTCTAGAGTTGGCTCTTGTCAAGGTTTTCTCTTACCCTAGTGTACATGATTTTTCCTCTTCCCCTGTTTCTTAGCTGTAAAGATCACGAAGGGGGACTTTGCTGCTGCATGGCCCTCTGCTATTTCAGGCAGGGCCATTGCTGTGCTCTTATCATTCTCATCTTGTGTTTTCATTTGGTATATTTGTTATTACACTTTAATTCCCATGTcttttatatatgtgtgtgtatttttctATAATTGTTGCTTTATTATAGGTATATTAAATACCTGGGAGTGGTGTGATCTTGTAATCGTCCCCTGACGTAAAATTATTCTTATTTTCTGGCCTATCTCAGCAGGATAGTTCAATTATTATCTATAGCATCGATTAAATCATAAGGAATCTATTCTGCTGACTTTATAGTTGTATTTGTGTCTTCTTAATGTCAGTTCATAAATATTACCTGCAAACTACCCTCGGCTAGTCTGCAAATTAGGCTGTCTGTGTTTACAGTCATGCCTGTTTTAGAGTAGGTGGATTGGGTATATTTTGATAGGAAAGACTTACTTTGGTAGCTAATTGCCATATGCCCACATGCTATTATAAGGAAGATACGTTTGTATCACATTGCTAAACTCCAAGACTTTCGAAGTTTGAGTTGATGCTTTTGTGACAGCTATGAAACAGATACAAGTATTACAATTTGGAGGAGAATATACAGCAGAATGCAAGTTATGAAATTACAGGTGAGGTGAAAACACTTGAATTATTTAGCACCCTTTTCTGAGCTTTACAGTGACCTCTGCTGGTACATGCTGTGAATAAGCACATTATTATTGATCAAATTGTTTTGGAGACTTTTGCAGTCCACTTGCATATCAATTTATAAAACTTTTATGCGTTAGTTATTGCTTTCAATTTCATTCAATTCTGTTCTAAACAAAGCCACAATACTGTCTGACTCAAATTTGAGTGCAAACATATACTTTTGTGTCAAAATAAACATCTAACGAAGTAGATGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K09037 MAFF_G_K; transcription factor MAFF/G/K

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557789.2 False 3569 mRNA 0.41 3 38915127 38919761
XM_021557790.2 True 3435 mRNA 0.41 3 38915127 38928959

Neighbor

gene id symbol gene type direction distance location
LOC110486300 elfn1 coding downstream 107569 38712701 ~ 38807558 (-)
LOC110486299 nudt1 coding downstream 335819 38577130 ~ 38579308 (-)
LOC110486297 LOC106601124 coding downstream 363321 38490118 ~ 38551806 (-)
LOC110486295 LOC106607327 coding downstream 494866 38411240 ~ 38420261 (-)
LOC110486294 LOC106607327 coding downstream 515804 38390883 ~ 38399323 (-)
LOC110486307 LOC106601117 coding upstream 136205 39065164 ~ 39071223 (-)
LOC110486310 LOC106601114 coding upstream 207961 39136920 ~ 39183852 (-)
LOC110486311 LOC106601151 coding upstream 291120 39220079 ~ 39223322 (-)
LOC110486313 snn coding upstream 319191 39248150 ~ 39250310 (-)
LOC110486314 cp075 coding upstream 325071 39254030 ~ 39254795 (-)
G1172372 NA non-coding downstream 78981 38835835 ~ 38836146 (-)
G1172361 NA non-coding downstream 96482 38818001 ~ 38818645 (-)
G1172240 NA non-coding downstream 104366 38810379 ~ 38810761 (-)
G1172230 NA non-coding downstream 117581 38797318 ~ 38797546 (-)
G1172177 NA non-coding downstream 185770 38729015 ~ 38729357 (-)
G1172431 NA non-coding upstream 55445 38984404 ~ 38990726 (-)
G1172485 NA non-coding upstream 79428 39008387 ~ 39008764 (-)
G1172557 NA non-coding upstream 133245 39062204 ~ 39062470 (-)
G1172615 NA non-coding upstream 157453 39086412 ~ 39088792 (-)
G1171337 NA other downstream 1716487 37198228 ~ 37198640 (-)
G1171149 NA other downstream 2030787 36884018 ~ 36884340 (-)
G1171057 hsp70b other downstream 2086702 36665169 ~ 36828425 (-)
G1171051 NA other downstream 2318486 36595832 ~ 36596641 (-)
G1171050 NA other downstream 2320601 36594054 ~ 36594526 (-)
LOC110486318 kdm8 other upstream 399257 39328216 ~ 39331966 (-)
G1173645 NA other upstream 994963 39923922 ~ 39924959 (-)
G1174658 NA other upstream 1387159 40316118 ~ 40316859 (-)

Expression


Co-expression Network