LOC110486307 (LOC106601117)


Basic Information

Item Value
gene id LOC110486307
gene name LOC106601117
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 39065164 ~ 39071223 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557797.2
AAACATTTAAAACGCCACAACATGTTGACCAAAAACTAGCCTCCGTCATTTTCGATGTGGAAGCGAGCGTTCGAAATTAGTCCATCTCTTTCACCTTTTACTGGGATACAATCTGATCACTCTCTCTTGGTGGTCCCCCGTGTAGTTGTGATGTAGTTCTTATCAAAGCCCTCCTGTCTTGTTGTGACAGCTCTGATATTGTTTATTGAGGTGGATGTCAGGTTTAATTAGCAATCGATATGGAAAGCGTTTGCAGACCGCGCCTCTGACGTCATACTCGATTACCGTTTCTCATTGGTCTCAAATTCCCAAAGCCTAGGCTAATTATTGGAAGGTTCATGTTGATAAAGTACAGCTCATCCTTCCCTCCACATCATGTCCCCTCCTCGCTGGCCACTCTCACTGCATGCTTTTTAAATTCACACCACCAGCCTCCAGACGTCGTTTCCTTTTGCCTAGGAGATGATGGACAGCAGGATACTGGATCCACCTCATGCCCAGTTCGGAGGCTCTCTCGGCGGGATGGTGGGCTTTCCGTACCATCTAAGCCACCATCATGTTTACGAATTAGCCGGTCATCAACTTCAATCTGCGGCCGCAGTTCCTTTTTCAATAGACGGATTACTTAATGGTTCCTGCACAGCTTCAGTGGTTAATTCAAACCCCCTCTTGTCTGGCTGTGGTATGAATGGAGATAACCAGCAGTACAAGTTGACAGATTCGTGTGACCCAGACAAGGATAGCCCTGGTTGTAAGAGACGACGAACTCGTACAAATTTCACTGGTTGGCAACTGGAAGAATTAGAAAAGGCTTTTAATGAGAGTCACTATCCCGACGTGTTCATGAGGGAAGCACTGGCTCTGAGATTGGACTTGATAGAATCGAGGGTACAGGTATGGTTCCAAAATCGTAGAGCTAAGTGGAGGAAAAAAGAAAACACAAAGAAGGGTCCAGGGCGACCAGCTCACAACTCCCACCCAACAACATGCAGTGGAGAGCCCATGGACGCGGAGGAGATCGCCAGGCGAGAgctggagaggatggagaagaagaagaggaagcagGAGCGAAGACTGTTGAGGTCCCAGAATAAACTTTTGTCAGGGGACCTATTTCACACCCCAGGATCTGACAGTGACAGCGGAGTGTCACAAGTGACAGACAGTGAACAAAATCCACATTGTGACTCTGTAGGCCGAAACCAAACCCAATCGAGCTGTGACCAAACACCACAAACCCTCCAGAACCAAAGACACTTGAACCAAGATGCTGGTGGATCCGAGCTGGACTCGTCCGACAGCAGTCAACAGTCAAGCATGTGCGCCAACAGCAGAGCCTCCACCCTTCAGAAGCTGAACCCATTCAGCGTAGAAAGCCTTCTATCCGACTCCAGACCAAGGCGCAAACCGAACATAGATGGATTTTCTGCCTTACCTTCTTCGCGGCCTTTGATAGGGAAAGGACATTTCTTACTCTATCCTATCACCCAGCCGCTTGGATTCCTTGTTCATCAGACTGCTTTGAAGACAACACCACCAGACTCAGATACTGACAACTCCACACAAAGAACCCTAGTGAATGACAGCAGCTTATCTGCCAATACTGGACATAAAAACCACAAGGAGTCCAACAATCTCAACGACGCAACAGCAATCAAAGTGCAGGTCAACTTTACCGCGAAAAATACTAGTTCCCCACAGAACAGCCCAGGCCATGTTACCTTTTCCAGTAGCAACTGTAGTCAGCCTTCAGCCAGTTGTAGTGCAACATATTTCCAAGATGATGATGATTCAAAGTATCTGCCATTAGACAAAAAAGAGCAGTCTGTAAAAGACTACCCAGAGAGTTCCGAGTCTGTGACAACCAACTGTCCaccagagacaaagacagagactcAAGATGTCGGTATGGAATAATAGACCTATAGGTGAGAAACAATATTGATAGCGTCAACAACACCTTTCATTTGCCCAAAGCTCAATCACGTCTTAGAATATAAACTTTCATTTCAAAGATGACATATATAGCCTATTTTCTGATGATGATGGgttataactgtgtgtgtgtttgctgcgtgcgtgcgtgcgtgtatatgtgcacgtgtgtgtgtggtggtggtggtagtagtactagCCCCCTTGTGTAACAAACTGTAAAAATACATAAAAACCACAAAAATCCTCAAAGGCTGTAAAAAGtattataatatttatatatgtaAGGTTTTCATAAATAAATCGATTGTATACAATACATCCAAACCGTGTGAGACCTTAAATAGCCCGTATAGTGGGTATAGGTAGCGCTTTCTGTTAAAATCTGATGTTGTATTTTGTGTATTGCTTTAACAAATTTATTCATCTATAAGCCTCACTGAAATGAGGTTACGAGCCGGAGGCGAAAGGACCCGCTCGACTCCTGCAGAGTTTTGATATGAAAGTAATTATTTTCCCGGTGGCTACTGCAGGGATTCAGTTTATTTTAGCCCAAAGGGTTATTATACATTACCGATTTCTAGTGATATGAAATCACATAAACTTCCAAGAATAATAGAATTAGCATGAAAGGCTGGGGTGTCAAATTGAAATACGAAAATAATAGCCCCGGCAGCTGGGAGTGTGTTTGTGCATATTGGATAGGAGATGGGAATTCGTGGGGCGGAATTTTCATGAGCTTTTCACTTTGTCAGGGCCCTTGTATCCGGCTATATTAAGATAGATGTTCGATGATATCCCTCATTGTTCTGTCGCTTACATTGATGTTTCTGTGTTATCAGCCTATTGATCATGCGTCGGCTGTAATAGGACGGGCGAAGCAAACGTGCCTATTTACAATAGCAGAACACATTTGTTCTAATAGGGTTGGCGGTCCCCAGGGATGCTATGCAGGCTCGGGGACATCTGCGCCATGGCAATATTAGCAATGTTGACCAGATCTAAAGTCTAGGTAAGAAAGGAAAGACCATTCACATCTCAAACAGCTTGTTTTACAAGATAGGACCTATAGGTATAACGCACGAGAAAATGCCCCCAATAACACGAACATCTAAATCCTAAAAATGGAAAACATCCATTCCAGTGTGGTGTAGTTGTTCTTAAATACCCCGAGGCCCTGCTACTCTTTTAGGGTCTtgatttgcaaataaattgaAAATAATCAGAGGGGCAGCTTTACATCTGAGCCGGAGCAAATGAATTTCTGAGCCTGTGTCCCTTTCATAATATTTACATAATTTTCACCCGATGACTGCTGTTTGCTCAGAGGAAGCAATGACTTATTGGGTGTGGGTGAAGGGGGGCTTTTGGTATAAGAGACAGGCAAAAGTGTATAGGGAAAGGGAAAATGTAATCTCAACAGAGAATATATAGGCCTATGGCAGACAGAAAGTCAATAAGCTAATGAATAACTTATTATTTGATGAAAACAGATCCAAATACAATGGCCCTTGGAAGTCCTCAACCCAACAAGGATAATACTTTGAACTTTTATTAAATATATATTCCTATACCCGACATAACATTGAAAGACATTATCTTCTTATTcagccagccacagccagccCAGCTCCCCCAATTATTGAGCTTTATTTCTGTCAATAGGTTGACATTTAGGATAGGCCATTTGGAAATTAGAGTTGTCTGGATGTGtccttcaatatatatatatattttgtgtgtgtgtcttatttgGAGCGTATGTTGTATGGTAGGGGGTGTTCATGTTTAATTCATTAGCATACCGAACAGGAGTATCGTGGCTGCGCACTGGTGGCCTTAAGGTGAAATTAGCGATTTGCTTAAGTAGTTAAGCTTTTTTTTTTGCCTGAGAGCTGCACGCTGTATGATTCAAGACAAACTATCAATCGATATGGCCCAGGCAGCCTCCAGGAAATGTGTCCTCCATGAATCATACTTTATGAATTCAATTTCTACCCGGAGAAATTTTCAATTTGAACGCCGGATCATTATGGGAGAGTGTAAATTGTTTTTGCTCTATTA
>TU1337185
ATGTTGACCAGATCTAAAGTCTAGGTAAGAAAGGAAAGACCATTCACATCTCAAACAGCTTGTTTTACAAGATAGGACCTATAGGTATAACGCACGAGAAAATGCCCCCAATAACACGAACATCTAAATCCTAAAAATGGAAAACATCCATTCCAGTGTGGTGTAGTTGTTCTTAAATACCCCGAGGCCCTGCTACTCTTTTAGGGTCTtgatttgcaaataaattgaAAATAATCAGAGGGGCAGCTTTACATCTGAGCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557797.2 False 3999 mRNA 0.43 3 39065164 39071223
TU1337185 True 263 lncRNA 0.40 1 39065977 39066239

Neighbor

gene id symbol gene type direction distance location
LOC110486304 LOC106607337 coding downstream 136205 38915127 ~ 38928959 (-)
LOC110486300 elfn1 coding downstream 257606 38712701 ~ 38807558 (-)
LOC110486299 nudt1 coding downstream 485856 38577130 ~ 38579308 (-)
LOC110486297 LOC106601124 coding downstream 513358 38490118 ~ 38551806 (-)
LOC110486295 LOC106607327 coding downstream 644903 38411240 ~ 38420261 (-)
LOC110486310 LOC106601114 coding upstream 65697 39136920 ~ 39183852 (-)
LOC110486311 LOC106601151 coding upstream 148856 39220079 ~ 39223322 (-)
LOC110486313 snn coding upstream 176927 39248150 ~ 39250310 (-)
LOC110486314 cp075 coding upstream 182807 39254030 ~ 39254795 (-)
LOC110486315 LOC106607344 coding upstream 184596 39255819 ~ 39275633 (-)
G1172557 NA non-coding downstream 2694 39062204 ~ 39062470 (-)
G1172485 NA non-coding downstream 56400 39008387 ~ 39008764 (-)
G1172431 NA non-coding downstream 74438 38984404 ~ 38990726 (-)
G1172372 NA non-coding downstream 229018 38835835 ~ 38836146 (-)
G1172361 NA non-coding downstream 246519 38818001 ~ 38818645 (-)
G1172615 NA non-coding upstream 15189 39086412 ~ 39088792 (-)
G1172614 NA non-coding upstream 20618 39091841 ~ 39092675 (-)
G1172638 LOC106607395 non-coding upstream 46073 39117296 ~ 39117688 (-)
G1172651 NA non-coding upstream 55297 39126520 ~ 39126827 (-)
G1172658 NA non-coding upstream 59752 39130975 ~ 39131215 (-)
G1171337 NA other downstream 1866524 37198228 ~ 37198640 (-)
G1171149 NA other downstream 2180824 36884018 ~ 36884340 (-)
G1171057 hsp70b other downstream 2236739 36665169 ~ 36828425 (-)
G1171051 NA other downstream 2468523 36595832 ~ 36596641 (-)
G1171050 NA other downstream 2470638 36594054 ~ 36594526 (-)
LOC110486318 kdm8 other upstream 256993 39328216 ~ 39331966 (-)
G1173645 NA other upstream 852699 39923922 ~ 39924959 (-)
G1174658 NA other upstream 1244895 40316118 ~ 40316859 (-)

Expression


Co-expression Network