LOC110486337


Basic Information

Item Value
gene id LOC110486337
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40095953 ~ 40156221 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035537.1
ACCTCTATTTCAGAGTCCTCCAATGACAGACACTCTAGGCACTCTGTGTGTTTAGGAAGAAGGGCTACTGGTCGCCGAAAGATGGAAATGTCTTCTTCATTTTCAGACTGGAGAGTAAGATTAGACAAATGTCAGCTAACGTTTGATACATTTATCTAGATTTACTGTGGCAAACACAATTCAAACTCTTGTGGAACAGCAACTTGGTTTCGTGAACTTACTGGACTACCCAGAACCGGACGTGTGCCTAAGGACGTCCAAATTCAATAAAATCTAACAGAAAACATGACCATTGGCTGGACAATCCTGGACTTTGACAGACTGGCAGTTAAGAAAATACATGGGGCATATGAAGATTGGCGGGACTGGTCCAGGTTGGCTTTCTTTGCCACTGTTCTGTGAGTGCTACGTGCGCTACAAACCAGGTTGCCTGTGCCAGCAGCCGCTGAGAGGGAGCCATCCGCCGTCACGCTGTGAGGAGATATGACCTAAAGAGCTCGGCTTCCCGACTGAAACGCCAAGCCCTTTGTTTATGTAGGGTTGACAGCCAACCACATTTAACATGTTTGTGAAGAATACTGAGGAGTCAAGGACTTGCATTTGCTATTTTGTATGCATGAATTTTGTATTAGTTTGTTGTATAAGCATAGACATTGTTGGGGATATACAATGGGTAGGCTATGGTATATTGTGATAACCTAGAATGAATATTCTACCAAAAACGACATATTTGCCCCAAGTACTTAAATCAATCGTTTTTTTTTATGATCAAATAAACATAGTGAATTAAATCTAA
>XR_005035536.1
gtttgttaacaagaaatttgtggagtggttgacaaacgagttttaatgactccaacctgtCTTGGTTTCGTGAACTTACTGGACTACCCAGAACCGGACGTGTGCCTAAGGACGTCCAAATTCAATAAAATCTAACAGAAAACATGACCATTGGCTGGACAATCCTGGACTTTGACAGACTGGCAGTTAAGAAAATACATGGGGCATATGAAGATTGGCGGGACTGGTCCAGGTTGGCTTTCTTTGCCACTGTTCTGTGAGTGCTACGTGCGCTACAAACCAGGTTGCCTGTGCCAGCAGCCGCTGAGAGGGAGCCATCCGCCGTCACGCTGTGAGGAGATATGACCTAAAGAGCTCGGCTTCCCGACTGAAACGCCAAGCCCTTTGTTTATGTAGGGTTGACAGCCAACCACATTTAACATGTTTGTGAAGAATACTGAGGAGTCAAGGACTTGCATTTGCTATTTTGTATGCATGAATTTTGTATTAGTTTGTTGTATAAGCATAGACATTGTTGGGGATATACAATGGGTAGGCTATGGTATATTGTGATAACCTAGAATGAATATTCTACCAAAAACGACATATTTGCCCCAAGTACTTAAATCAATCGTTTTTTTTTATGATCAAATAAACATAGTGAATTAAATCTAA
>XR_002468060.2
actgtattacaaAAAGAGATTCAGGTTTGTACTTGCAGTGTGCGTAAAAGCTCAGTATTAAGAGTTGTGAGATGTTTTTTTTGTCCGAATTTCGTCTTGATATCAGTGCACTGTAGCTAATCATTATCCCAGGTAAAGGGAAATGTAGCTGTTTCTTATCTCACAGCACACACATTGACCGGCAAACAGACTGTGATGTTAAACGTGGGTTGACTTTCACTTTATTCTCTTTCTCTGTAGCTTGGTTTCGTGAACTTACTGGACTACCCAGAACCGGACGTGTGCCTAAGGACGTCCAAATTCAATAAAATCTAACAGAAAACATGACCATTGGCTGGACAATCCTGGACTTTGACAGACTGGCAGTTAAGAAAATACATGGCTCAGCTGTGTCTGCACAAGAGGAACATCACCACCCCCTGTAACTAAATGGAAAGAGCCAAACACCTCAAAACCTTCATACAGATTGGAAATCCCTGTATCTTGTACCATATTGATAATTCCCCCAAGCTGATCTATTCCAGATGATTTGTGAAGGAAGCTGAGCCAAGTGCCTCCCGCCCAGGGCATATGAAGATTGGCGGGACTGGTCCAGGTTGGCTTTCTTTGCCACTGTTCTGTGAGTGCTACGTGCGCTACAAACCAGGTTGCCTGTGCCAGCAGCCGCTGAGAGGGAGCCATCCGCCGTCACGCTGTGAGGAGATATGACCTAAAGAGCTCGGCTTCCCGACTGAAACGCCAAGCCCTTTGTTTATGTAGGGTTGACAGCCAACCACATTTAACATGTTTGTGAAGAATACTGAGGAGTCAAGGACTTGCATTTGCTATTTTGTATGCATGAATTTTGTATTAGTTTGTTGTATAAGCATAGACATTGTTGGGGATATACAATGGGTAGGCTATGGTATATTGTGATAACCTAGAATGAATATTCTACCAAAAACGACATATTTGCCCCAAGTACTTAAATCAATCGTTTTTTTTTATGATCAAATAAACATAGTGAATTAAATCTAA
>XR_002468059.2
CAGGTTTGTACTTGCAGTGTGCGTAAAAGCTCAGTATTAAGAGTTGTGAGATGTTTTTTTTGTCCGAATTTCGTCTTGATATCAGTGCACTGTAGCTAATCATTATCCCAGGTAAAGGGAAATGTAGCTGTTTCTTATCTCACAGCACACACATTGACCGGCAAACAGACTGTGATGTTAAACGTGGGTTGACTTTCACTTTATTCTCTTTCTCTGTAGCTTGGTTTCGTGAACTTACTGGACTACCCAGAACCGGACGTGTGCCTAAGGACGTCCAAATTCAATAAAATCTAACAGAAAACATGACCATTGGCTGGACAATCCTGGACTTTGACAGACTGGCAGTTAAGAAAATACATGGGGCATATGAAGATTGGCGGGACTGGTCCAGGTTGGCTTTCTTTGCCACTGTTCTGTGAGTGCTACGTGCGCTACAAACCAGGTTGCCTGTGCCAGCAGCCGCTGAGAGGGAGCCATCCGCCGTCACGCTGTGAGGAGATATGACCTAAAGAGCTCGGCTTCCCGACTGAAACGCCAAGCCCTTTGTTTATGTAGGGTTGACAGCCAACCACATTTAACATGTTTGTGAAGAATACTGAGGAGTCAAGGACTTGCATTTGCTATTTTGTATGCATGAATTTTGTATTAGTTTGTTGTATAAGCATAGACATTGTTGGGGATATACAATGGGTAGGCTATGGTATATTGTGATAACCTAGAATGAATATTCTACCAAAAACGACATATTTGCCCCAAGTACTTAAATCAATCGTTTTTTTTTATGATCAAATAAACATAGTGAATTAAATCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035537.1 False 796 mRNA 0.42 4 40095953 40156221
XR_005035536.1 False 654 mRNA 0.42 4 40101513 40156221
XR_002468060.2 False 1017 mRNA 0.42 5 40101600 40156221
XR_002468059.2 True 813 mRNA 0.42 3 40101621 40156221

Neighbor

gene id symbol gene type direction distance location
LOC110486335 LOC106607360 coding upstream 10458 40068600 ~ 40085495 (+)
LOC110485171 LOC100380767 coding upstream 45188 39993278 ~ 40050765 (+)
gper1 LOC106607359 coding upstream 113807 39973210 ~ 39982146 (+)
LOC110486331 LOC106607358 coding upstream 134953 39943881 ~ 39961000 (+)
LOC110486329 baiap3 coding upstream 203492 39854579 ~ 39892461 (+)
LOC118938286 LOC106585892 coding downstream 114303 40270524 ~ 40273859 (+)
LOC110485173 LOC106601093 coding downstream 146312 40302533 ~ 40348028 (+)
polr3k rpc11 coding downstream 198229 40354342 ~ 40357833 (+)
LOC110486339 LOC106607363 coding downstream 241040 40397261 ~ 40406809 (+)
LOC110486346 LOC106601143 coding downstream 254457 40410678 ~ 40413435 (+)
G1173753 NA non-coding upstream 30271 40065414 ~ 40065682 (+)
G1173751 NA non-coding upstream 32440 40063294 ~ 40063513 (+)
G1173746 NA non-coding upstream 38631 40056955 ~ 40057322 (+)
G1173742 NA non-coding upstream 41734 40053900 ~ 40054219 (+)
G1173709 NA non-coding upstream 105767 39989933 ~ 39990186 (+)
G1173876 NA non-coding downstream 112900 40269121 ~ 40269322 (+)
G1173878 NA non-coding downstream 123536 40279757 ~ 40280046 (+)
G1173885 NA non-coding downstream 131335 40287556 ~ 40287772 (+)
G1173870 NA non-coding downstream 151441 40307662 ~ 40308188 (+)
G1173902 NA non-coding downstream 152808 40309029 ~ 40309264 (+)
G1172996 NA other upstream 622174 39473458 ~ 39473779 (+)
LOC110486302 LOC106607335 other upstream 1217574 38876161 ~ 38878379 (+)
G1170455 NA other upstream 1505246 38589772 ~ 38590707 (+)
G1170322 NA other upstream 1833100 38262414 ~ 38262853 (+)
G1170288 NA other upstream 1886432 38209235 ~ 38209521 (+)
G1174211 NA other downstream 749310 40905531 ~ 40906473 (+)
G1174245 LOC106607208 other downstream 845662 41001883 ~ 41003024 (+)
LOC110486375 LOC106601281 other downstream 899231 41055429 ~ 41065432 (+)
G1175164 NA other downstream 1383270 41539491 ~ 41540680 (+)

Expression


Co-expression Network