shisa9b (LOC106607398)


Basic Information

Item Value
gene id shisa9b
gene name LOC106607398
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40187986 ~ 40216345 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557855.2
CAGTCACCGGAGGATGTCTGTGGCGCAGCGCAGAGAAATGATTTAAACCTATTCAAGATACTCATATTCAAGATACCTGTAGCAACTGTAAAAGTGTTGTTGTCGCATCAGTTTTTTTGTTATAAGCAATTGGAACAGATATAACATTTACACAAATTGCCATACAACATCACCGTGCGCTGATGGACAATTACGCGCAGAAGTTGCGTTGCGTAATCATGATAATCATCGCGGATGGCTGTGTTTCATGTTCTTGGATTATGCGTACAAGCTTGTTATGATACCTGGTCATCGCCTTTCCTTCGTCTACAGTGGAGAAGAAAAGTAACAAAGGGACGCACATGATGAGAAGCGCGGGGTTGTTGCTTGGCTACTTTTTGGTGAAAGTTCTTGTATGCGACGCGGAGGGGGAGCCAGGGCAGAAACTGGACGGCTTTATTATGGTACCAACGGGTACCAACGAGTCAAAATTGAACAGAGAGAATAGCGTTTCGGAGAGTCCGCATACAGAGGACAGGTGCCGGGGTTATTACGATGTGATGGGCCAGTGGGATCCGCCGTTTGTGTGCCAGACGGGCAGTTACCTGTACTGCTGCGGGACCTGTGGCTTCAGATTCTGCTGTGAGTTTACAAGCTCGCGGCTGGACCAGACCACCTGCAAAAACTATGACACGCCGCCGTGGATGATGACAGGCAGACCCCCGCCTAAGAAAAAAGACCCCACTCACGACCCCACAAAGGATAAGACAAACTTAATTGTGTATATAATATGTGGAGTTGTTGCCATAATGGCCCTCGTTGGGATTTTCACAAAACTTGGACTTGAAAAGGCGCACCGTCCACACAGAGAAAACATGTCAAGGGCTCTAGCCCAGGTGATGCGCCAGCCTGGTCCAGGAGAACACTCAGAAGACATTGGAGTGCATGGACAGCACTATGACAACATGCAAGCCAACAGGGTACCTGCGAACAGTCTCCAGGCTAACCAGATGAACAGTGTGGGTCCAGGATCATCACTAATGCCAGGCTTAGGGTCTCCTCCCCACCCCTACCCTTCCCTGGGACAGATCCCTAGCCCCTATGAGCAACAGCAACCTGGGAAAGAGCTCAATAAGTACGCCTCCCTCAAGGCTGTCGCGGAGAAGGTTAATGACAACTTCTACACCAACCGGCGGCACATGGTAGAGATGGCAGCCAAGGGCAGTCTCCCTATGCACCCGATGCATCGCATAGAGCAGGAGCCCAGCAACCCCTACAGCCCTCCCTTACAGCCTTCCCTAAAGCAGAACGGACACAAGTCCAAAAGCACCAAGGGCCACAGCAGCCACAGCAGCAGCTCCCATACCCTGGCCTATGGCTCCAACACCATCGCCAACCCGGGGATGCAGAAGAACTGGGACGGCTCAGAGACGGTGGGCCGCCGGCAGAGCCACGGCACTAAGAAACACTGCACCATAGAGCAGGTGAACGAGATGCACAGCACCTCGCGCAGCCAGCACTACATGCCCCCGCAGCCCTACTTTGTCAGCAACAGCAAGACAGAAGTGACTGTCTGATCTGAGAGCCCACCCCACCACCATAACCACTATAACCCCAGctgcaagaaagagagagagcgcgagagcgagagagcgcgagagcgagagagagcgcaagagagttGGTCAGAAGGTTGCTGTAGAGGCTGAAGTAGAACAGCGGTCCTGGATTGAGAGCCCCTCTCTAGGGGTGCTGTGTGTCAACTAATGCGTGTGGCTGACTGTGCATGTGACAGGCATGTGTGGGACTCCTGCCAGTGGGGGGAGAGTGACCACAACAACATACTCCAAACCTCCAAGGTTTCGGTCATCACTGTATTGGTGATTATATTGCAACTAATACAAACAAATCATATACTGCAAGTCAGACTAATAACATCAGTGAGCAGAGCATAGTAATGATTGACCTCCGATGGACAGGTTAGCCAGGATGAGCCTGGAGCCATGCAGTGGTGGAAGAGACTGGAACTGGACAAAAGCCCAGTGGCAATAGACTTTTCCTATTGTCAGTATTAACTGAGATCTCAAAGGGCCTGAAAATGTGTATCATCTCATGTAGTTTCCATTGAATCCGCCGCGGATAAGCCAGTAGGTTTAGATCTAGACGCAGTGGAGCAGAGGAGTGGAGCAGCCGATAGTAAAGGGATACATTGTTCTCCTCAACATTGATTGACATTTCCTCAGATGTTGTGTAGTGTATATACTGTGGGGGGGACTTGTTGGTAATGCTCATGCTCGGGAACCTCGGGCTCATGATTACATCTATCGGGAAACAGTGACAATTTCAGATATGGACTGTATATTCTCCTTCAGAAACGACAGGGCATGAGGTGGATGAGACTGCACCAAACCAGTTCTGTAGCCACAACGTTACACACACCCTACTCTGCTCTCTCTGGTGTTAGGGCTGTGCCTTTCTCTGAGAAAACTATGAAATACTGTTCAAATCAAAGAGCTCGTCTTATAAACCACTGCATAAGTTGTGGAATTTACTTAAATGTCTTCATCTTGCAAACAGGTCCACAACTGTCAGTTGAAAACGGTGAGTTACATCtatcatttcacattctttatttCTGTTTCCATTTGAcaatgcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctttacctTGGTACCTTAGATCAATGATAGAGAAAACACAGAAGGAATTGTGTCCTTTCCATACATGTAACGTCACTGCCAATACATTTGTGAATATATTGCCCATATATTTATGATAACTCCCAAATTGATTAGCATGGGATTAATGTTGTGCAGTGGTGCCTGTTTCTCACCCACCTCCATCAATACTACCAAATCTTTACATGGCCTAAAGCCAGGCCCCCCATCTCAGACTGTTGTGGCAGTAGAAAACTACTGAGGGCTCCTTTACGGCTACCCAGAGAGATGTTAAAGGGTAGTAGATGTTCCTGAAACAGCCAAAAAAAAGGTACAGCCTGGGTAAATAGAGTGGATGGATTTCATTTAGTATGAGATCAAGCCCTGAATTAAGACAGAGAAGGTCCTCTGAAATCACCATGAGTTGATGTCATTGCATGCACAAATCAATCTAGCTTTCTGTAAAAGAGAAATTGCAATAAATGGTTTCCCTATTtttcttattattatttaaaaaaagaaaatctaCAGTTTCATCAACTTTATAAGATATacacataaaaataaaatgtgttcaTTTTGAATATCTGGAGTAGCCTACTAAAACACCTGAGAGTACCCATGTACAAACACACAGGTCAAGATGTGCCTGTCTTTTCCATTGGGCAAGTTGTGCGTCATCAGATGAAAAATAGTACATTTTTCTCCCAACACTCCATTCTTGGGAGCCCACACGAGCGGCACAGTGCATTAGCATGCCACACTTACCAAAAAAAGCGTTTTAAATAAAGGACTTCTGATGCAATTTGCCATGTGTTGCGTTTGTCACTGCCCACTGATTCAAGAGCAGCCCACACTTTGTCCGCATGTCTTAATCATGCCTCTCAACTTTCCATGGCTTTCAACTGTCCATTAGTCTGTCTGCCAGTGACAAAGTGGCTCTAATGGCTGGAGGAGTGACAGCCAGCAGCTTGTCGTTCATTCTCTTACTCACCACATGAGATCTGGTAAGAATAGCCGTGAGTCACATTCCCTACTTTTAGAACTTTGGAAAGCATTAGAGGTGGACAAaaagtatttttattttgtgGTTGGTACAGTACGAAAAACTAGACTAAGGGAACAATCCTCAATACTGATTTGCTAAGGCCTACTATACAATACGTGCTTGTATTTTTAACCACATTTGAAccagatactgtatgtattgtataGTCCAGGCACACAACTATATGTTTGGAGTGTGTTATCACATTGTCAGTGAAACGTAATGCACCAATACTGTAGATTGCTGCAATATGCTAACAACCAACCACCATCTCATTTCTCATAATAAATATGTTCAAATCTTTATTTTGCTATTGCATGACGAAACTCACAGTCACACAAACTGCAACACGTTGTATTGTTGTTTAATCACACAAGACACTTGTATGGAGAATTTTCTAGACTAGACTCGTCATATATGCAGTTTTTGGCATATATACAACGCATATCAGTTCAACATTTGCACCAATAAGACAGAAGACTTCAGAATACCAATGATGTGATGCAAAAAAAATGGATGCATATTTGTGTATTACATTTGTCTATACAAAAcaatgtccaacaatgaaaatggtAAGGAAAAATATTGCAAATGTGCATTGACTGCAAAAGGGCTGATTCTTTAGGTCATAAATATAGAGACATATTTAGTATGGCTGTACAGTACATAGTTAAGGTGATGTTTTGGTAGGGCCATAGAATAAGTCTGTGCCTTGTGTCCAAATGAAATGTGCACCTGATTTAATTGTCCAAATActgactggtctaggaacagaTTGATGCATAATATTATACAGTATAGCATGACATGAAATCACTGTTCCACTTCAAAGGACCCTCTCAATATCAATATCATATCCAACAagagttcatttaaaaaaaaaactataatcaCCAGAAAATGTATCTGGTTTCTCAGTGTTAAAACATGTGCAGAAGTCCACAGCTCCATTGATTGTAGATAGAGTGCACCTATTATACTGTTCCAGTCATGGAGGGAACCTAGAGTAACACTTATATGTGTAGTAGTGAAGTATAACTCCCTCACTCAAATAGCTTCCACTGATATAATTGCATAAAACATGTACATGACGTGTAGATTAACATTCCAGCTGACTGGTCATCATGCTACATAATGGCATACTGTAAAGTAATAGCACAATGGCCGTTGACTCTAAATCATGTCCTATGAAATGATTTAACTATTTACATCCAAACTTTGCTCATTTCTCAATCTAAATAAAAACATTCTCTACCTAATCCTCATTGAACTAAATTGTGCCCCTGGCTGAGGCTGAATTGCATTCATGATGCAGCTAGTGGTCTTGGTTCCAACCTTTAGGAGTGGGAAGACGATGGTGCTCTTTGTCAGTTGATCATGTTATTCGTGAAGCACAACTGATTTTGTATCCTAACAAAATGAAATATTACTTGTCATAAATGTATGTGCAAGTTGGGAAGCGGAAACTCCATTGTATTGTACACATCtaaaatcatatttacaataaatCTGTTTCTTCTCAA

Function

NR:

description
protein shisa-9B-like

GO:

id name namespace
GO:0048172 regulation of short-term neuronal synaptic plasticity biological_process
GO:0032591 dendritic spine membrane cellular_component
GO:0045202 synapse cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557855.2 True 5235 mRNA 0.44 4 40187986 40216345

Neighbor

gene id symbol gene type direction distance location
igfals LOC106601095 coding downstream 88402 40096969 ~ 40099584 (-)
LOC110486334 LOC106607235 coding downstream 91282 40083669 ~ 40096704 (-)
LOC110486323 LOC106607351 coding downstream 427813 39739422 ~ 39760173 (-)
LOC110486320 LOC106607349 coding downstream 572876 39526773 ~ 39615110 (-)
LOC110486318 kdm8 coding downstream 856020 39328216 ~ 39331966 (-)
LOC110486342 LOC106607365 coding upstream 132442 40348787 ~ 40351985 (-)
snrnp25 LOC106601091 coding upstream 135748 40352093 ~ 40354570 (-)
LOC110486343 LOC106607364 coding upstream 143450 40359795 ~ 40370035 (-)
LOC110486345 f100a coding upstream 172599 40388944 ~ 40397229 (-)
LOC110486347 LOC106601085 coding upstream 222993 40439338 ~ 40484785 (-)
G1174484 NA non-coding downstream 124777 40062840 ~ 40063209 (-)
G1174478 NA non-coding downstream 133555 40054106 ~ 40054431 (-)
G1174477 NA non-coding downstream 134325 40053154 ~ 40053661 (-)
G1174462 NA non-coding downstream 137237 40049018 ~ 40050749 (-)
G1174463 LOC106601099 non-coding downstream 140797 40044994 ~ 40047189 (-)
G1174626 NA non-coding upstream 51774 40268119 ~ 40268449 (-)
G1174628 NA non-coding upstream 52776 40269121 ~ 40269322 (-)
G1174633 NA non-coding upstream 63435 40279780 ~ 40280137 (-)
G1174648 NA non-coding upstream 85419 40301764 ~ 40301985 (-)
G1174650 NA non-coding upstream 86555 40302900 ~ 40303103 (-)
G1173645 NA other downstream 263027 39923922 ~ 39924959 (-)
LOC110486313 snn other downstream 937676 39248150 ~ 39250310 (-)
LOC110486310 LOC106601114 other downstream 1006792 39136920 ~ 39183852 (-)
G1171337 NA other downstream 2989346 37198228 ~ 37198640 (-)
G1174658 NA other upstream 99773 40316118 ~ 40316859 (-)
G1174741 NA other upstream 240550 40456895 ~ 40457681 (-)
LOC110486364 LOC106601288 other upstream 617558 40831402 ~ 40843483 (-)
col5a3a LOC106607203 other upstream 1068437 41282052 ~ 41362985 (-)
G1175904 LOC106607178 other upstream 1780969 41997314 ~ 41997637 (-)

Expression


Co-expression Network