polr3k (rpc11)


Basic Information

Item Value
gene id polr3k
gene name rpc11
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40354342 ~ 40357833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160530.1
AGATGTAACAACGTTTCACACGAGAGTGGAGGTCAACAACGCTGTCAGGATTTTTATCATTTAGCTAAATGATTGAAATAGATGTATAAACTTAGCTACATTGTGAGATCGGTTCTGGCCAATTTAGTCAAAAGAATATGCTTCTGTTTTGTCCAACATGTGGGAATGTGTTGATTGTAGAGGAAGGACAGAAGTGCTATCGATTCGCCTGCAACACATGTCCGTACGTGCACAACATTACTAGGAAGGTAAACAACAGGAAGTATCCCAAACTGAAAGAGGTTGATGATGTGCTTGGTGGAGCTGCAGCCTGGGAAAATGTGGATTCCACGCCAGAAAAATGTCCCAAGTGTGAGCACCCCCGAGCATTCTTCATGCAGATTCAGACCAGATCTGCAGATGAACCGATGACAACGTTCTACAAATGCTGCAATTATGAGTGTGGACATCGCTGGAGAGACTAAACTGGTTCAATTGGATCTCTACCTGAGAACACTAGTTGAGTCAGCTAACCTGGTTTTATAGTGTATGTGCTGTAGCCAAATCTTCTGTTGTCATGCCAGACAGCTTTGGCATAACAGTGAATAAACAGGAGTTTGCTAATAGCACAAATAGACTGGACCACATGGCTACTAGTTGACCACACCATTGGCGCTAAGCTTGTTGGTGAAAAAGTAGCAAGAGTTGATGTAATATACACTTCTACCAAATATGCTTTATACACAAGAGTATGTCCTTGCTTTGTTCAGCATTGCGATTAGTTAACTTCTCTTTGTGTTTCCTATTACATTCAGAAGTCAATTGCACTTCCAATTTATAGCTGAAGATGCATCATTTGTGTTTGAGTAGTTGCCAAATGGCCAGAATCCATTGTTGgagtcatttattttatttctccTAGATTTGTTTTACATACTATAAAAATGACTTTGTGTTTTTGGATTGAAAGAGTATGACTATCTGATGAAATTACTAATAACATCACAAATACTGGTTTGTTTTGTTAAAATAACTGCACTGTATGCAACAGTAATGACCCAACTCATCATTTAGATGTACATGTACATtagacaattatttatttttttgagggGGCAATAGACCAACTACAAAGACATTCATTGTGTTCAAAGTTAAATACAATCCTTAAACTCTG
>TU1338645
CTCTTTTtctaatataatacaatatagttAACTTTAAGtataaattataattattttaagAAGGAACCATAAAGAAATAGCAAATGTTGTTTCTTACCGAACCTTTTTAGATGTAACAACGTTTCACACGAGAGTGGAGGTCAACAACGCTGTCAGGATTTTTATCATTTAGCTAAATGATTGAAATAGATGTATAAACTTAGCTACATTGTGAGATCGGTTCTGGCCAATTTAGTCAAAAGAATATGCTTCTGTTTTGTCCAACATGTGGGAATGTGTTGATTGTAGAGGAAGGACAGAAGTGCTATCGATTCGCCTGCAACACATGTCCGTACGTGCACAACATTACTAGGAAGGTAAACAACAGGAAGTATCCCAAACTGAAAGAGGTTGATGATGTGCTTGGTGGAGCTGCAGCCTGGGAAAATGTGGATTCCACGCCAGAAAAATGTCCCAAGTGTGAGCACCCCCGAGCATTCTTCATGCAGATTCAGACCAGATCTGCAGATGAACCGATGACAACGTTCTACAAATGCTGCAATTATGAGTGTGGACATCGCTGGAGAGACTAAACTGGTTCAATTGGATCTCTACCTGAGAACACTAGTTGAGTCAGCTAACCTGGTTTTATAGTGTATGTGCTGTAGCCAAATCTTCTGTTGTCATGCCAGACAGCTTTGGCATAACAGTGAATAAACAGGAGTTTGCTAATAGCACAAATAGACTGGACCACATGGCTACTAGTTGACCACACCATTGGCGCTAAGCTTGTTGGTGAAAAAGTAGCAAGAGTTGATGTAATATACACTTCTACCAAATATGCTTTATACACAAGAGTATGTCCTTGCTTTGTTCAGCATTGCGATTAGTTAACTTCTCTTTGTGTTTCCTATTACATTCAGAAGTCAATTGCACTTCCAATTTATAGCTGAAGATGCATCATTTGTGTTTGAGTAGTTGCCAAATGGCCAGAATCCATTGTTGgagtcatttattttatttctccTAGATTTGTTTTACATACTATAAAAATGACTTTGTGTTTTTGGATTGAAAGAGTATGACTATCTGATGAAATTACTAATAACATCACAAATACTGGTTTGTTTTGTTAAAATAACTGCACTGTATGCAACAGTAATGACCCAACTCATCATTTAGATGTACATGTACATtagacaattatttatttttttgagggGGCAATAGACCAACTACAAAGACATTCATTGTGTTCAAAGTTAAATACAATCCTTAAACTCT
>TU1338643
GTTTCACACGAGAGTGGAGGTCAACAACGCTGTCAGGATTTTTATCATTTAGCTAAATGATTGAAATAGATGTATAAACTTAGCTACATTGTGAGATCGGTTCTGGCCAATTTAGTCAAAAGAATATGCTTCTGTTTTGTCCAACATGTGGGAATGTGTTGATTGTAGAGGAAGGACAGAAGTGCTATCGATTCGCCTGCAACACATGTCCGTACGTGCACAACATTACTAGGAAGGTAAACAACAGGAAGTATCCCAAACTGAAAGAGGTTGATGATGTGCTTGGTGGAGCTGCAGCCTGGGAAAATGTGGATTCCACGCCAGAAAAATGTCCCAAGTGTGAGCACCCCCGAGCATTCTTCATGCAGATTCAGACCAGATCTGCAGATGAACCGATGACAACGTTCTACAAATGCTGCAATTATGAGTGTGGACATCGCTGGAGAGACTAAACTGGTTCAATTGGATCTCTACCTGAGAACACTAGTTGAGTCAGCTAACCTGGTTTTATAGTGTATGTGCTGTAGCCAAATCTTCTGTTGTCATGCCAGACAGCTTTGGCATAACAGTGAATAAACAGGAGTTTGCTAATAGCACAAATAGACTGGACCACATGGCTACTAGTTGACCACACCATTGGCGCTAAGCTTGTTGGTGAAAAAGTAGCAAGAGTTGATGTAATATACACTTCTACCAAATATGCTTTATACACAAGAGTATGTCCTTGCTTTGTTCAGCATTGCGATTAGTTAACTTCTCTTTGTGTTTCCTATTACATTCAGAAGTCAATTGCACTTCCAATTTATAGCTGAAGATGCATCATTTGTGTTTGAGTAGTTGCCAAATGGCCAGAATCCATTGTTGgagtcatttattttatttctccTAGATTTGTTTTACATACTATAAAAATGACTTTGTGTTTTTGGATTGAAAGAGTATGACTATCTGATGAAATTACTAATAACATCACAAATACTGGTTTGTTTTGTTAAAATAACTGCACTGTATGCAACAGTAATGACCCAACTCATCATTTAGATGTACATGTACATtagacaattatttatttttttgagggGGCAATAGACCAACTACAAAGACATTCATTGTGTTCAAAGTTAAATACAATCCTTAAACTCTGCTTTTACTACATGTTCTTACACAGCCTCCAGCCACTTCACACTGCATGTAGAAGATTCAAGAGCGTACAAAGTTAAGAGACCAGCCTGTGAAACGTGTCCATAAGAATGCATGTACATGCAGACATACTCCACCTGCCTTCAGTGTTTACTGTATATAAGCATGCTGGTTATTGGTAGTATTGAGAGGAGACGAGACTCAAATGAAGCAGACAAAAGATCTTGCATACCATACATTGGACTGAATCGAACACGTTAATATGAAGCGGATGATAACATCACTTGAATCTGCATTCGAGATTACATTATTTCAGCCAAGACTTGGTGACGAACTTGCTTTTGTACACCTGTATCTCTATGGCATATCAGACTAACATGCATCAGAGCAATAGTGATCAAAGCTAGACAAGGAACACTAAAGAGAAAGAGCAGATTGTGGCGTTGAGACCTTAACTTTGCTTGACCAGATGATGTAGCAGGTTTATGCACAGAAATGCTGAATACGAAAGAATGTATTTGAGATGAGGTTGAATGTGAAGGACATtctgttcatcattaaagaaattATGTAACCCATCAAAAAAGGTAGTAAAACACTGACGAGGGAAAAACCCTGGATGCACTCTACTTTAATTATTCCCTCTGGACATCAACTGACAGACATGACCAGTGAAAGGATCATCCGTTTTGGATTGGGCAGGACAGAGTAGTGTGGGCCAGCAGCACAGATTGACACACATTGGCCTCGTGACACAGACTGGACATATGGCCTGAGAGAGGATGAGTGCACAAAATTACAGTGATATCATGCAGAGCGCTTCATCATTCTAATGTGCCCCTCCAGCAGAGCGGATTGGACACTGCCAGCCAGGTCGGCTTCGCTCCGTTCCCTTCCTATATGGAAAATTACAAGGAAAACTGTTTTTTCAGTGTGGACTGATAGATCAACTAGAAAATCTCGGTCTCTGACATGTGCATGGTTATGGTGCTCGGTGACTGCATGGATGTTGAAGCTCAATGTAGCCCTGCATCAGTGACAGGTGATGTGTTTGTGGAAAGTACAGGATTATGAGTAAAGATCAGGTTCACTTAATTTGACACCAAGCCACATGTAAATTATCCTTAATATGACATAGTCCAAGTTGTTGACAGCAAAGTCTTACAAAAACTAGCTAGTCTCCTTACCAGTTGGGTCTTAATGATAACGAAGCTTGGCAAGCAAGGCTATAAATTATCTAACTGAATGGCAGTCTAAAccacttaaataaataaaaactacaGTAAAGTCATGGCAATTATGGTTTTATGAATGTATGAAATTTCACATGGGAACTTGTGCATTCGCAATACAAGCACACATTTTCTTCATtatcaaaattgaatacattaaTATGGACATGACTGGCATTATTGTGTAACAGCTCTAGCAAAAATCACTGGACATCAAGTGACTATAAAGCACATAGAGGATTTAAAAAGACAGTAACACGTACTTCTCTCACTTAAGTGGGAACAACTCAAATTAACTCAGTCTTACCGACTCGAGTTTGTCCTAACAAATCTGATACATGGTTATTTCCTTGCAACATTTGAAATGGATATCCATTAAGGTTGTAGGACAAACAGGGTGATTAGAACATAAACATAAAGTAGGTCTCAGACATGGACGTAACCTTCATTGTGCTCAATATTAACATGTTAAAATACATTCaattacaaaaacaacaaaatactgaCCCTGCAATTGCTGATGATTGCTGGCGATTTTGATTAAAGTGACAAATGTTTACAGCTTTCCCAAAGTGTGACCTTTCTCTACCCCTCAAGTTTGCTCCATAAATGTCAAATTCAAAGCCTTCCT
>TU1338644
GTTTCACACGAGAGTGGAGGTCAACAACGCTGTCAGGATTTTTATCATTTAGCTAAATGATTGAAATAGATGTATAAACTTAGCTACATTGTGAGATCGGTTCTGGCCAATTTAGTCAAAAGAATATGCTTCTGTTTTGTCCAACATGTGGGAATGTGTTGATTGTAGAGGAAGGACAGAAGTGCTATCGATTCGCCTGCAACACATGTCCGTACGTGCACAACATTACTAGGAAGGTAAACAACAGGAAGTATCCCAAACTGAAAGAGGTTGATGATGTGCTTGGTGGAGCTGCAGCCTGGGAAAATGTGGATTCCACGCCAGAAAAATGTCCCAAGTGTGAGCACCCCCGAGCATTCTTCATGCAGATTCAGACCAGATCTGCAGATGAACCGATGACAACGTTCTACAAATGCTGCAATTATGAGTGTGGACATCGCTGGAGAGACTAAACTGGTTCAATTGGATCTCTACCTGAGAACACTAGTTGAGTCAGCTAACCTGGTTTTATAGTGTATGTGCTGTAGCCAAATCTTCTGTTGTCATGCCAGACAGCTTTGGCATAACAGTGAATAAACAGGAGTTTGCTAATAGCACAAATAGACTGGACCACATGGCTACTAGTTGACCACACCATTGGCGCTAAGCTTGTTGGTGAAAAAGTAGCAAGAGTTGATGTAATATACACTTCTACCAAATATGCTTTATACACAAGAGTATGTCCTTGCTTTGTTCAGCATTGCGATTAGTTAACTTCTCTTTGTGTTTCCTATTACATTCAGAAGTCAATTGCACTTCCAATTTATAGCTGAAGATGCATCATTTGTGTTTGAGTAGTTGCCAAATGGCCAGAATCCATTGTTGgagtcatttattttatttctccTAGATTTGTTTTACATACTATAAAAATGACTTTGTGTTTTTGGATTGAAAGAGTATGACTATCTGATGAAATTACTAATAACATCACAAATACTGGTTTGTTTTGTTAAAATAACTGCACTGTATGCAACAGTAATGACCCAACTCATCATTTAGATGTACATGTACATtagacaattatttatttttttgagggGGCAATAGACCAACTACAAAGACATTCATTGTGTTCAAAGTTAAATACAATCCTTAAACTCT

Function

symbol description
rpc11 Contributes to RNA polymerase III activity. Involved in tRNA transcription by RNA polymerase III and termination of RNA polymerase III transcription. Part of RNA polymerase III complex. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human POLR3K (RNA polymerase III subunit K).

NR:

description
DNA-directed RNA polymerases III 12.5 kDa polypeptide

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160530.1 False 1156 mRNA 0.38 3 40354450 40355974
TU1338645 False 1263 TUCP 0.37 3 40354342 40355973
TU1338643 False 3003 lncRNA 0.39 3 40354462 40357833
TU1338644 True 1143 TUCP 0.38 3 40354462 40355973

Neighbor

gene id symbol gene type direction distance location
LOC110485173 LOC106601093 coding upstream 6422 40302533 ~ 40348028 (+)
LOC118938286 LOC106585892 coding upstream 80591 40270524 ~ 40273859 (+)
LOC110486337 NA coding upstream 198229 40095953 ~ 40156221 (+)
LOC110486335 LOC106607360 coding upstream 268955 40068600 ~ 40085495 (+)
LOC110485171 LOC100380767 coding upstream 303685 39993278 ~ 40050765 (+)
LOC110486339 LOC106607363 coding downstream 41287 40397261 ~ 40406809 (+)
LOC110486346 LOC106601143 coding downstream 54704 40410678 ~ 40413435 (+)
aanat-2 aanat-2 coding downstream 80262 40436236 ~ 40438857 (+)
LOC110486349 LOC106607370 coding downstream 150343 40506317 ~ 40507829 (+)
LOC110486351 LOC106601078 coding downstream 178737 40534711 ~ 40535614 (+)
G1173914 NA non-coding upstream 3429 40350590 ~ 40351021 (+)
G1173895 NA non-coding upstream 5095 40348125 ~ 40349355 (+)
G1173910 NA non-coding upstream 23520 40330669 ~ 40330930 (+)
G1173902 NA non-coding upstream 45186 40309029 ~ 40309264 (+)
G1173939 NA non-coding downstream 30937 40386911 ~ 40387213 (+)
G1173940 LOC106572245 non-coding downstream 52614 40408588 ~ 40408824 (+)
G1173959 NA non-coding downstream 76421 40432395 ~ 40433138 (+)
G1173964 LOC106607368 non-coding downstream 90333 40446307 ~ 40447315 (+)
G1173990 NA non-coding downstream 120614 40476588 ~ 40477442 (+)
G1173715 LOC106601095 other upstream 198271 40080474 ~ 40200482 (+)
G1172996 NA other upstream 880671 39473458 ~ 39473779 (+)
LOC110486302 LOC106607335 other upstream 1476071 38876161 ~ 38878379 (+)
G1170455 NA other upstream 1763743 38589772 ~ 38590707 (+)
G1170322 NA other upstream 2091597 38262414 ~ 38262853 (+)
G1174211 NA other downstream 549557 40905531 ~ 40906473 (+)
G1174245 LOC106607208 other downstream 645909 41001883 ~ 41003024 (+)
LOC110486375 LOC106601281 other downstream 699478 41055429 ~ 41065432 (+)
G1175164 NA other downstream 1183517 41539491 ~ 41540680 (+)
LOC110486395 ccd56 other downstream 1417516 41773456 ~ 41777013 (+)

Expression


Co-expression Network