LOC110486345 (f100a)


Basic Information

Item Value
gene id LOC110486345
gene name f100a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40388944 ~ 40397229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557864.2
GATCGACCCTCCCCATCGCTCTGATTTGCTCTCTCGTGCTGCCGATCAAAGGGGCGCTCAGGACACTGAACATAGTTCATACAGTAAATATTTGGGTTTTTACTGCGGACTGTGCTGTCTTCATGGTCGATGAGAGGAAAGGCTAATGCAAGGGAGAATAACCTCAAGGACTGAGCACCAACCCAAGGGGAAAGGTTTAGAATAGCCCGCGTATGCAAATATGGATGATCTAAAGCACCAAGTTATGATAAATCAGTTCGTCCTGACTGCTGGATGCGCGGCAGACCAAGCGAAACAGCTTCTACAAGCGGCACATTGGCAGTTCGAGACTGCATTAAGTGCCTTTTTTCAAGAAACCAATATTCCATACAGTCACCATCATCAAATGATGCACACTCCAGCCAACACACCAGCAACACCTCCCAACTTCCCAGACGCCCTGGCCATGTTCTCCCGCCTCAAGGCCTCAGAGAGCTTCAACGCCAGCAGTCCCATAGCCTCCATGGCGACCTCTCCTCCTCAGGTCAACTGGGCCATGGGCCCTTCTGCCCCAGGTCAGACCCAGCAGGGCATGTGGACTTCTGGGCAGATGCCCTCTCAGGTGCCTCCCCCTGGGTGGCCCCAAGCCGTCACACAGCAGGCCTCCAGTGAACAGGCCAGCGTCACCATGGAGGCAGAGAGATGAGAGCACTGCAGGGGCCTCGCGATAACAAGAGGAACCGACATCGGGCAGTCCTCTTTGAGTTGTCTGTAAGGGAAAGCAGAAAACCAAGCAATGTTGTGGAAATGCACTGAGGACAGAAAGATAGGAATTATGAGCATACAGCTGATGAACATTCACATGACGCCACATTGTAAAAATCTGCAGACAATTTTAGCTAGGCATACGTTTCATTTTTTTTCATTGATCTGAAACCAGAGACAAAGGTGGACTTGTATAACTAGTGCCGAAGAAGGATCTTCTTGTTGTACACACCGATGTGTATGACAGTGTCATCATCTTTCCTTTGTCTTTctgtagtggtgtcaatggactGGATGCCTTTGATACTGGGGGTGCACTGCATAAATAACATCATTCTTCTTGATTTTTTAACCAGTGTAAGTGTGTGAATATCATGTGTTCTAGTATTCTAATGTGCTTAGAAACCAACTTGGATCTGCTTTTTCAAACATTGGGCAATGACTTTGACTGTCTCACTCACACAATCAAGGAACACCAGCTAGCCAATCCAACTTATGTTTAATAAGCAACTTTACAAGCTGCGCCTCTTTGTATACAGTGTTTCTGTCTGCATTGAATGCTAAAGGATGTTATACTGCAATCATGGTTCAGTGTTTTTTGCATGATTTTGTTTTCAGCCACTAGTGTTCAGGGGAAAAGTGAGATCAAGGTTTCTGTCAGAGCGAGACTTCTTGCTTGATATTCCAGCTGTGCACCATCTCGAAGTAGCAGACAGATAGTTTTTGATACAGTGTTGTTGTTGCTTAAGATGGAAATCAACAtattaggggaaaataataaatagGGAAAATATATTTGAAAGAATATAGATTTAAAacatataaatacaaaataataagaaAAAACTGCATATTTGGTGATGCTGTCTCAGGAACTCTCGGCTCAAACATGTTTCGTCTAGGCACCTGATCATCTTTTTATTTTGTAAAATGGAATGAATATTGCAATTGAAAGGAACTGATACATTCATTGAAGGACTCATCCAAACGTTTTCTATTCTACAATCTGTTAATCTGATAATCACACTAGTTTTGCTTTGCACATCGGTTAATCTGAACACACGCCTGTTCCTCAATGTTTTCCATGAGACAGCTACCACAACAATTTTGTGGATTACCAGACAATTAATTATTTTGTGTTTCTGAATAAATATTGTATCTATTACACTGCATTAGA

Function

NR:

description
UBA-like domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557864.2 True 1921 mRNA 0.43 3 40388944 40397229

Neighbor

gene id symbol gene type direction distance location
LOC110486343 LOC106607364 coding downstream 18909 40359795 ~ 40370035 (-)
snrnp25 LOC106601091 coding downstream 34374 40352093 ~ 40354570 (-)
LOC110486342 LOC106607365 coding downstream 36959 40348787 ~ 40351985 (-)
shisa9b LOC106607398 coding downstream 172599 40187986 ~ 40216345 (-)
igfals LOC106601095 coding downstream 289360 40096969 ~ 40099584 (-)
LOC110486347 LOC106601085 coding upstream 42109 40439338 ~ 40484785 (-)
LOC110486348 LOC106601082 coding upstream 110849 40508078 ~ 40520177 (-)
LOC110486350 LOC106601074 coding upstream 135573 40532802 ~ 40533721 (-)
LOC110486352 LOC100136576 coding upstream 140825 40538054 ~ 40539112 (-)
LOC100136207 LOC106607371 coding upstream 172606 40569835 ~ 40570915 (-)
G1174614 NA non-coding downstream 36717 40351910 ~ 40352227 (-)
G1174680 LOC106607362 non-coding downstream 45606 40342475 ~ 40343338 (-)
G1174678 LOC106601093 non-coding downstream 46906 40339643 ~ 40342038 (-)
G1174676 NA non-coding downstream 50340 40337876 ~ 40338604 (-)
G1174675 NA non-coding downstream 51453 40336098 ~ 40337491 (-)
G1174740 NA non-coding upstream 55421 40452650 ~ 40453023 (-)
G1174765 NA non-coding upstream 101656 40498885 ~ 40499124 (-)
G1174771 NA non-coding upstream 136652 40533881 ~ 40534162 (-)
G1174708 LOC106601078 non-coding upstream 137514 40534743 ~ 40535632 (-)
G1174772 NA non-coding upstream 138538 40535767 ~ 40536457 (-)
G1174658 NA other downstream 72085 40316118 ~ 40316859 (-)
G1173645 NA other downstream 463985 39923922 ~ 39924959 (-)
LOC110486318 kdm8 other downstream 1057705 39328216 ~ 39331966 (-)
LOC110486313 snn other downstream 1138634 39248150 ~ 39250310 (-)
LOC110486310 LOC106601114 other downstream 1207750 39136920 ~ 39183852 (-)
G1174741 NA other upstream 59666 40456895 ~ 40457681 (-)
LOC110486364 LOC106601288 other upstream 436674 40831402 ~ 40843483 (-)
col5a3a LOC106607203 other upstream 887553 41282052 ~ 41362985 (-)
G1175904 LOC106607178 other upstream 1600085 41997314 ~ 41997637 (-)
G1175906 NA other upstream 1602123 41999352 ~ 42000091 (-)

Expression


Co-expression Network