LOC110486349 (LOC106607370)


Basic Information

Item Value
gene id LOC110486349
gene name LOC106607370
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40506317 ~ 40507829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941058.1
TGTTCACCTCTTGAGTTGAATGATCTAGCTAAACATGGTGGTTAAAATGTGTGTTGTGTATTCCTGTATCAACATTGGAGTCCAGCTAGCGGTTGCACAGCCATTGGCACACATACATCATCAGCAGGGCTTATTGTGACCCCACACATGTAGTCTAGTTCTCTTCAGAGACAACAATAGCTCAAGTTCCTACTGAAGACAtacccactgaggacaaacatGAAAGAACGTCTTTATTTAGGCCATCCCTTGTTTGTGCTGCAAGGTATTGGTGTGTCAGAGTGCAGATGGCACTGAGCTGAGAGGGAGGGTGGTGGAGACTGAGGCCTGAGGACAAAGCCTCTCACTCTGCTGGGGGAAAATGCACTGAGAGGAACACAGCGATGTttatgaaacctggcaccatctatGTGTACCCCATCTACGGCATCTACCTCTGTATGAATGTTTCCAGTCAAGGTAAGACCATACAACAAAACAGTACAACAGCCAAGCTTACCCTGAAGGCAGTGGAACAAACCACCAGTAATAAACCAAACTGCCATTAAAACCACACGCAGAAAAGTTCAGTGTGTTGGCCTTATCTGTAGGAAAATCACCTCATTAGAGACTAAGTAGTGTTGCATCTCCCAGGCTCTCCCATGTTACTTTCATTAGGCGATAGTTCTCTTTTTTTCAACTGTTTCTCATTATTGAAGACGTTATATTATATGTTGCACCATGTTATTATCCATTCATTCACACTGGAGAAAGGTCAAAGGAAGGAGACAGTATGGCTCCACTCTATCgttccctgtgtgtgttctctctagggGAGGGTGCTGCTGTGCTTCTGCGGGCTCTAGAGCCTCTAAATGGCCTGCCTCTGATGAAGCAGCTGCGGACAACCAGGCGGAGGGAGGGGGCCCGGCCCCTGAAGGACAAAGAGCTATGCAATGGTCCCTCAAAGCTGTGCCAGGCCCTGGACATACCACGCTGCTTCGACCGGAGAGACCTTGCCTCAGACCCAGAAGTGTGGCTGGAGAGGGACACCCAGATAGGACTGCAAGAGCCAGGCCTCAGGGAGGTGGTCTCAGCAAGCCGGATCGGCATTGACTCTCATGGGGAATGGGCCACCAAACCCCTGCGCTTCTATCTGCGTGGTCACCACTGTGTGAGTGTAGTGAACAAACAGGCAGAGATACAGATTCACTCACTGGCCAACAATGTGATATCAGACTTTGCGTCCTCCTCAGTGGACGTATGTGATGGTGACACAGGACAGAGTTGAAACTGGGAATATTTTGGGAATTGTATCAAACCATGATGAGTATATACTTAATGTTTTTACAGACATAATGCAAGTGAAAAATGTCAGCTATGAGCTATTTCAGTAATTTGGTCTAGCTATGGGGAAATCATTGCAAAATACCCAAAGCCAAAACATCTGTAAAATATTTGATCTAGCCTCCCCTCCCTGCTATCAAAGCAACTAGAATTTCCATTCCAGTCATTCTCATTAATAAACATCCTT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941058.1 True 1513 mRNA 0.47 1 40506317 40507829

Neighbor

gene id symbol gene type direction distance location
aanat-2 aanat-2 coding upstream 67460 40436236 ~ 40438857 (+)
LOC110486346 LOC106601143 coding upstream 92882 40410678 ~ 40413435 (+)
LOC110486339 LOC106607363 coding upstream 99508 40397261 ~ 40406809 (+)
polr3k rpc11 coding upstream 150343 40354342 ~ 40357833 (+)
LOC110485173 LOC106601093 coding upstream 158289 40302533 ~ 40348028 (+)
LOC110486351 LOC106601078 coding downstream 26882 40534711 ~ 40535614 (+)
LOC110486353 LOC106601071 coding downstream 32982 40540811 ~ 40541737 (+)
LOC110486354 LOC106607383 coding downstream 64739 40572568 ~ 40573483 (+)
LOC100136296 LOC100136296 coding downstream 70592 40578421 ~ 40579519 (+)
LOC118938288 NA coding downstream 72862 40580691 ~ 40583273 (+)
G1173990 NA non-coding upstream 28875 40476588 ~ 40477442 (+)
G1173964 LOC106607368 non-coding upstream 59002 40446307 ~ 40447315 (+)
G1173959 NA non-coding upstream 73179 40432395 ~ 40433138 (+)
G1173940 LOC106572245 non-coding upstream 97493 40408588 ~ 40408824 (+)
G1173939 NA non-coding upstream 119104 40386911 ~ 40387213 (+)
G1173987 NA non-coding downstream 61975 40569804 ~ 40572025 (+)
G1173986 NA non-coding downstream 68389 40576218 ~ 40577203 (+)
G1174047 NA non-coding downstream 116532 40624361 ~ 40624631 (+)
G1174055 NA non-coding downstream 129845 40637674 ~ 40639607 (+)
G1174069 LOC106607387 non-coding downstream 157098 40664927 ~ 40665150 (+)
G1173715 LOC106601095 other upstream 350138 40080474 ~ 40200482 (+)
G1172996 NA other upstream 1032538 39473458 ~ 39473779 (+)
LOC110486302 LOC106607335 other upstream 1627938 38876161 ~ 38878379 (+)
G1170455 NA other upstream 1915610 38589772 ~ 38590707 (+)
G1174211 NA other downstream 397702 40905531 ~ 40906473 (+)
G1174245 LOC106607208 other downstream 494054 41001883 ~ 41003024 (+)
LOC110486375 LOC106601281 other downstream 547623 41055429 ~ 41065432 (+)
G1175164 NA other downstream 1031662 41539491 ~ 41540680 (+)
LOC110486395 ccd56 other downstream 1265661 41773456 ~ 41777013 (+)

Expression


Co-expression Network