LOC110486352 (LOC100136576)


Basic Information

Item Value
gene id LOC110486352
gene name LOC100136576
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40538054 ~ 40539112 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557873.2
TTGGCTCAATGCCGATATGTGCCACACTCGATGACCTTGCCCCCTCAAGGCATTCATCCAATCATTTTCTGTGTTCTGTTCAGGGCGGAGATACTGAACATCAATAAATTGGACGTCGCAAGAGACAAAAAGCTCAGGAGTCCCTTGTAACATTTTGCAAGTACCAACGGAAATCAACAAACAAACGACAACATGGTCGACTGGACAGATGCTGAGCGCAGTGCCATCGTAGGCCTGTGGGGAAAGATCAGCGTGGATGAGATCGGACCCCAGGCCCTGGCCAGACTTCTGATCGTGTCTCCATGGACTCAGAGGCACTTCAGCACCTTCGGCAACCTGTCCACACCCGCTGCCATCATGGGTAACCCCGCCGTGGCCAAGCACGGAAAGACCGTGATGCACGGACTGGACAGAGCTGTGCAGAACCTGGATGACATCAAGAACACCTATACTGCACTGAGTGTGATGCACTCCGAGAAACTGCACGTGGATCCCGACAACTTCAGGCTCCTTGCCGACTGCATCACCGTGTGCGTGGCCGCCAAGCTCGGTCCGGTCGTTTTCAGTGCTGATATTCAGGAAGCCTTCCAGAAGTTCCTGGCTGTCGTTGTGTCCGCTCTTGGCAGACAGTACCACTAGAGCATCACTCGACAGCATCAATATGGAAGAGAGATGACACTCCAACTCCAGTCTGTTAGGCTGGAACCTGTGCCATAGCTACACAtattgaaaataataaaatacacgTAAAAGCA

Function

NR:

description
hemoglobin subunit beta

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557873.2 True 755 mRNA 0.52 3 40538054 40539112

Neighbor

gene id symbol gene type direction distance location
LOC110486350 LOC106601074 coding downstream 4333 40532802 ~ 40533721 (-)
LOC110486348 LOC106601082 coding downstream 17877 40508078 ~ 40520177 (-)
LOC110486347 LOC106601085 coding downstream 53269 40439338 ~ 40484785 (-)
LOC110486345 f100a coding downstream 140825 40388944 ~ 40397229 (-)
LOC110486343 LOC106607364 coding downstream 168019 40359795 ~ 40370035 (-)
LOC100136207 LOC106607371 coding upstream 30723 40569835 ~ 40570915 (-)
LOC100136291 LOC100136291 coding upstream 37214 40576326 ~ 40577151 (-)
LOC110486358 LOC106607381 coding upstream 73130 40612242 ~ 40613133 (-)
LOC118938290 NA coding upstream 81047 40620159 ~ 40622878 (-)
LOC110486356 LOC106607377 coding upstream 88436 40627548 ~ 40628386 (-)
G1174772 NA non-coding downstream 1597 40535767 ~ 40536457 (-)
G1174708 LOC106601078 non-coding downstream 2422 40534743 ~ 40535632 (-)
G1174771 NA non-coding downstream 3892 40533881 ~ 40534162 (-)
G1174765 NA non-coding downstream 38930 40498885 ~ 40499124 (-)
G1174740 NA non-coding downstream 85031 40452650 ~ 40453023 (-)
G1174706 NA non-coding upstream 1667 40540779 ~ 40541827 (-)
LOC110486360 LOC106607387 non-coding upstream 38998 40578110 ~ 40700197 (-)
G1174792 NA non-coding upstream 53867 40592979 ~ 40593872 (-)
G1174839 NA non-coding upstream 185574 40724686 ~ 40725836 (-)
G1174844 NA non-coding upstream 205513 40744625 ~ 40748705 (-)
G1174741 NA other downstream 80373 40456895 ~ 40457681 (-)
G1174658 NA other downstream 221195 40316118 ~ 40316859 (-)
G1173645 NA other downstream 613095 39923922 ~ 39924959 (-)
LOC110486318 kdm8 other downstream 1206815 39328216 ~ 39331966 (-)
LOC110486313 snn other downstream 1287744 39248150 ~ 39250310 (-)
LOC110486364 LOC106601288 other upstream 294791 40831402 ~ 40843483 (-)
col5a3a LOC106607203 other upstream 745670 41282052 ~ 41362985 (-)
G1175904 LOC106607178 other upstream 1458202 41997314 ~ 41997637 (-)
G1175906 NA other upstream 1460240 41999352 ~ 42000091 (-)
G1176164 NA other upstream 1788932 42328044 ~ 42328572 (-)

Expression


Co-expression Network