LOC110486354 (LOC106607383)


Basic Information

Item Value
gene id LOC110486354
gene name LOC106607383
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40572568 ~ 40573483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557877.2
AGGGACCTAGTTGTATAGGCAGTCATCTTCAGTTAATTCCTCGTAGATTTAACACAGGTCAATCAAAAAGGAGCAAAATGAGTCTGACAGCAAAGGACAAATCTGTGGTCAATGCCTTCTGGGGCAAGATTAAAGGAAAGGCAGATGTCGTCGGCGCTGAGGCTTTGGGAAGGATGCTGACTGCCTACCCCCAGACTAAGACCTACTTCTCCGAATGGGCTGACCTGAGCCCCGGCTCTGCCCCAGTCAAGAAGCATGGAGGCGTCATCATGGGTGCAATTGGTGAAGCAGTCGGACTGATGGACAACCTCGTGGGGGGACTGAGTGCTCTCAGCGATCTGCACGCCTTCACGTTGCGCGTTGACCCTGGAAACTTCAAGATTCTGTCCCACAACATCCTTGTGACCCTGGCTATTCACTTCCCTGCGGATTTCACTCCCGAAGTGCACATTGCTGTGGATAAATTCCTTGCAGCTTTGTCCGCTGCCCTGGCTGACAAATACAGATAAGACCATCATGAAAGTCCAAACTTGGACTCCTGTTTCTGCTCTGGTGTTATCACATAATAAACAGGCAATGAATGAAG

Function

NR:

description
hemoglobin subunit alpha

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557877.2 True 586 mRNA 0.50 3 40572568 40573483

Neighbor

gene id symbol gene type direction distance location
LOC110486353 LOC106601071 coding upstream 30831 40540811 ~ 40541737 (+)
LOC110486351 LOC106601078 coding upstream 36954 40534711 ~ 40535614 (+)
LOC110486349 LOC106607370 coding upstream 64739 40506317 ~ 40507829 (+)
aanat-2 aanat-2 coding upstream 133711 40436236 ~ 40438857 (+)
LOC110486346 LOC106601143 coding upstream 159133 40410678 ~ 40413435 (+)
LOC100136296 LOC100136296 coding downstream 4938 40578421 ~ 40579519 (+)
LOC118938288 NA coding downstream 7208 40580691 ~ 40583273 (+)
LOC118938287 LOC106609103 coding downstream 15239 40588722 ~ 40592987 (+)
LOC118936354 NA coding downstream 36796 40610279 ~ 40615060 (+)
LOC118936300 LOC100135791 coding downstream 40814 40614297 ~ 40615287 (+)
G1173987 NA non-coding upstream 543 40569804 ~ 40572025 (+)
G1173990 NA non-coding upstream 95126 40476588 ~ 40477442 (+)
G1173964 LOC106607368 non-coding upstream 125253 40446307 ~ 40447315 (+)
G1173959 NA non-coding upstream 139430 40432395 ~ 40433138 (+)
G1173940 LOC106572245 non-coding upstream 163744 40408588 ~ 40408824 (+)
G1173986 NA non-coding downstream 2735 40576218 ~ 40577203 (+)
G1174047 NA non-coding downstream 50878 40624361 ~ 40624631 (+)
G1174055 NA non-coding downstream 64191 40637674 ~ 40639607 (+)
G1174069 LOC106607387 non-coding downstream 91444 40664927 ~ 40665150 (+)
G1174070 NA non-coding downstream 93692 40667175 ~ 40667968 (+)
polr3k rpc11 other upstream 216595 40354342 ~ 40357833 (+)
G1173715 LOC106601095 other upstream 416389 40080474 ~ 40200482 (+)
G1172996 NA other upstream 1098789 39473458 ~ 39473779 (+)
LOC110486302 LOC106607335 other upstream 1694189 38876161 ~ 38878379 (+)
G1170455 NA other upstream 1981861 38589772 ~ 38590707 (+)
G1174211 NA other downstream 332048 40905531 ~ 40906473 (+)
G1174245 LOC106607208 other downstream 428400 41001883 ~ 41003024 (+)
LOC110486375 LOC106601281 other downstream 481969 41055429 ~ 41065432 (+)
G1175164 NA other downstream 966008 41539491 ~ 41540680 (+)
LOC110486395 ccd56 other downstream 1200007 41773456 ~ 41777013 (+)

Expression


Co-expression Network