LOC100136291 (LOC100136291)


Basic Information

Item Value
gene id LOC100136291
gene name LOC100136291
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40576326 ~ 40577151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124545.1
CGTCAACATGGTCGACTGGACAGATGCTGAGCGCAGTGCCATCGTAGGCCTGTGGGGAAAGATCAGCGTGGATGAGATCGGACCCCAGGCCCTGGCCAGactTCTGATCGTGTCTCCATGGACTCAGAGACACTTCAGCACCTTCGGCAACCTGTCCACACCCGCTGCCATCATGGGTAACCCCGCCGTGGCCAAGCACGGAAAGACCGTGATGCACGGACTGGACAGAGCTGTGCAGAACCTGGATGACATCAAGAACACCTATACTACACTGAGTGTGATGCACTCCGAGAAACTGCACGTGGATCCCGACAACTTCAGGCTCCTTGCCGACTGCATCACCGTGTGCGTGGCCGCCAAGCTCGGTCCCGCCGTTTTCAGTGCTGATACTCAGGAAGCCTTCCAGAAGTTCCTGGCTGTCGTTGTGTCCGCTCTTGGCAGACAGTACCACTAGAGCATCACTCGACAGCATCAATATGGAAGAGAGATGACACTCCAACTCCAGTCTGTTAGGCTGGAAGC

Function

NR:

description
Hemoglobin subunit beta-4

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124545.1 True 522 mRNA 0.57 3 40576326 40577151

Neighbor

gene id symbol gene type direction distance location
LOC100136207 LOC106607371 coding downstream 5411 40569835 ~ 40570915 (-)
LOC110486352 LOC100136576 coding downstream 37214 40538054 ~ 40539112 (-)
LOC110486350 LOC106601074 coding downstream 42605 40532802 ~ 40533721 (-)
LOC110486348 LOC106601082 coding downstream 56149 40508078 ~ 40520177 (-)
LOC110486347 LOC106601085 coding downstream 91541 40439338 ~ 40484785 (-)
LOC110486358 LOC106607381 coding upstream 35091 40612242 ~ 40613133 (-)
LOC118938290 NA coding upstream 43008 40620159 ~ 40622878 (-)
LOC110486356 LOC106607377 coding upstream 50397 40627548 ~ 40628386 (-)
LOC100135790 LOC100135790 coding upstream 52586 40629737 ~ 40630688 (-)
LOC110486359 LOC106601060 coding upstream 61060 40638211 ~ 40660823 (-)
G1174706 NA non-coding downstream 34499 40540779 ~ 40541827 (-)
G1174772 NA non-coding downstream 39869 40535767 ~ 40536457 (-)
G1174708 LOC106601078 non-coding downstream 40694 40534743 ~ 40535632 (-)
G1174771 NA non-coding downstream 42164 40533881 ~ 40534162 (-)
G1174765 NA non-coding downstream 77202 40498885 ~ 40499124 (-)
LOC110486360 LOC106607387 non-coding upstream 959 40578110 ~ 40700197 (-)
G1174792 NA non-coding upstream 15828 40592979 ~ 40593872 (-)
G1174839 NA non-coding upstream 147535 40724686 ~ 40725836 (-)
G1174844 NA non-coding upstream 167474 40744625 ~ 40748705 (-)
LOC110486365 LOC106607218 non-coding upstream 281761 40844051 ~ 40859686 (-)
G1174741 NA other downstream 118645 40456895 ~ 40457681 (-)
G1174658 NA other downstream 259467 40316118 ~ 40316859 (-)
G1173645 NA other downstream 651367 39923922 ~ 39924959 (-)
LOC110486318 kdm8 other downstream 1245087 39328216 ~ 39331966 (-)
LOC110486313 snn other downstream 1326016 39248150 ~ 39250310 (-)
LOC110486364 LOC106601288 other upstream 256752 40831402 ~ 40843483 (-)
col5a3a LOC106607203 other upstream 707631 41282052 ~ 41362985 (-)
G1175904 LOC106607178 other upstream 1420163 41997314 ~ 41997637 (-)
G1175906 NA other upstream 1422201 41999352 ~ 42000091 (-)
G1176164 NA other upstream 1750893 42328044 ~ 42328572 (-)

Expression


Co-expression Network