LOC118938287 (LOC106609103)


Basic Information

Item Value
gene id LOC118938287
gene name LOC106609103
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40588722 ~ 40592987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035541.1
acactgaagtggatttaacaggtgacatcaataagggatcatagctttcacctggtcagtttgtcagggaaagagaatgttttgtACTCAGTGTGTTTTTGCTGTTTTAAGAACATTCAGAATTTCTATTTGACGATGGGATCAAGTTCTATTGTTTGATATTCCATTTGAGACTTTAGTCAATATGTTGGTCTGCCCTGTAATTGAATTTACTGTAGAATCAAAGCTGAGGTTTTTGGCTTGTCACACCATAGATTGTGCAGAGATATATTTGCTGTCACCTACTTACAGCCAAGCCAGCACTATATGCGTTTTAATAGATTCATTATTATGTAATTTTCTTAATTTAATCCTTTTCCCATTTTTGTGTTTTCAAAAGAGCAATACTtcatagagaaattaacatcctCCTAGCTGACTTAGAAGACCCTGAGTGTTCAAATCCTGCTGTGCCTGGTGCATCACACAGTTGGAGTGTGAGGAAGGAACTCTCACAGGATAGGTGGAGAGAGTCCAGGCCTGAGATTGTAGATTCTCTGCTGGTTGCAGAGCATGCTTCTCAGAAGATCTGTCAGTCATGCAATGTGAAAAGGGCTATTCTGCGATGTAGAGACCGTCTGCCGAAACAGCTTTTACTGTGAAGACTGCGATGTCTCTACACATGCAAAGTTCCCCCTGCACAACAGACCGTCCATGATCGAGGGGTTCTACACGACCCTTGCTCCAACTACAGCCATATCTCTCCACAGTGATGGCAAATATGCACTTCACGaacaggGTCGCTACAATGTTACAGTGCCTCTACTGACCTGCACAACCTGTCTTAGCACCTGGACAGCAAACTTGGCAGATCTGTTTAAGAATGGGTACTGGCCTGCCACTGTGAACTGTGACACCATATACCAGGTAGATCTGTTCAGCTCTTTTGAGGAGCTGAAAGTGTCAGCCCCAGGAATGTCCCATCTGGCGTTTATGTGGATTTTGGAGCAGCGAACTGACTTCTTTGGCAGGGTAACAATCAATTATACTCAGCTTTACCAATGTATGACTTCAGGTTAactatgttacattttgttacaaCACTTTGCGTAACATAACTTTATTTCCAGTACTACAACTATGTTAACATTTTAGGTCTCTTGCTACAGTACGTGTTAGCCTCCTGCACCACTGTCCTGCCATGCACCTTATCTGTGCCCCTCTTGCATCCAATATTTCCTGCTCTTTACAACATAAGTACTCGTCCTACTTTTGCGTTGGCTTTCACCTGCTTTGCTGTCAACACTATGTACTGGCCCTGCGTTAACTTAAATCCAGTAAGCCATAGTGAATTATAGTATGTTTTGTTTATACTATTGTTGAAAGTTATTTCATATATTTTCTATGTGTTTTTCCCTTACCAGAATGGAATGATCTGTGGGGACACTTTTCAAAAAAGCTTCTTTGAGTGGACGTACTTCCGCTCTGAAGTTGATCCAGTCTGTGATATACAGGACTTTGACTGCCCAGCCTGGTCTGTGATATACAGGACTTTGACTGCCCAGCCTGGTCTGTGATATACAGGACTTTGACTGCCCAGCCTGGTCTGCGATATACAGTACTTTGACTGCCCAGCCTGGTCTGTGATATACAGGACTTTGACTGCCCAGCCTGGTCTGTGATATACAGGACTTTGACTGCCCAGCCTGGTCTGTGATATACAGGACTTTGACTGCCCAGCCTGGTCTGTGATATACAGGACTTTGACTGCCCAGCCTGGTCTGCGATATACAGTACTTTGACTGCCCAGCCTGGTCTGTGATATACAGGACTTTGACTGCCCAGCCTGGTCTGTGATATACAGGACTTTGACTGCCCAGCCTGGTCTGTGATATACAGGACTTTGACTGCCCAGCCTGGTCTGTGATATACAGGACTTTGACTGCCCAGCCTGGTCTGTGATATACAGTACTTTGACTGCCCAGCCTGGTCTGTGATATACAGTACTTTGACTGCCCAGCCTGGTCTGTGATATACAGTACTTTGACTGCCCAGCCTGGTCTGTGATATACAGGACTTTGACTGCCCAGCCTGGTCTGTGATATACAGTACTTTATATCATTTAAACAATCCAAACAAGGTTTGCCTTTTCTTTGTCCAGTGTGAACGTTTTCAAATGCAGTGGAGTTCATTTTTAGCTTAAACGTTTTGAGTTTGTAATGTAATGAATTATCAACATTGTCAAGTGTCCCACAATCAGTTACTGAGGTTGATTGATATTTCATATGTCATATATTTAATGTATTTCACGCATCCTTTCAAGGGCTGATGACAAAGGATTCTTTGATGGCGTATTTATCTGCAAGGATGAGGATGTGTCTGACTTTGTGAACTATGTCCATAGAAAGACTAAACATGTACGTTTCCTGTGTATCTTCTAATCTGTGAAATAGGACTGGCCTCAAAGGCAGACTCGTTATACACTATTCCAATAAAAACACATCATTTTGGAGAGATGGTCATCCTCTCTCTTCAAGTCCAGGGTTGTTACACCACTCCCTCTGTTCAGAAATGCAACACACTTTACAAGCGCTTCTTTTTGACAGTCAATTTCCAACTTCTGATCTCCATTGTAGCGACCACAGCGGGTAGCTCTGCGCCCTCAGCTAGATTTTAAAAACCTAACCACTGTCCTGTTAACATTTCCCCCCccaatttttttcttcttctaccTATACTCTTCTACTTCCTTGTCTAGGGTTATGGAAAAGGGTTATGTGGAGCATCCCAGTGGACAGCAGCTAAAGAGTCGTCAAGGGAAACAAACAACAAACTTGATGAAGAGGGACTCGAAGTTGCCGTCTGCCGCCACGGAATACTTCTAAGGAGCCTCAACATGATGCGTGGAGAGATATTTGCGTACCCACTGTTCTTGCAGAAGGAATTGTCTGGCAGCAGGAACATACAATTCATGTGTACGGATGTGATCTGAAAATGTTGGCCATACCTGAccaaagttgcttgtcattgtccAGAGCTCGCCACTCTTCTAGACATGAAGCCACTCCTTTCCGTCATGCATGCAAAGGCACATCATTTGAAATGCCAGatTAAGTGGGGAGGACGGAATCAGGAAGGAGCTGGCACAACTCTGGGGAAGGAAATGGAACAAGGGTGCAGCTTCTTGTCGAGGGCTGCAATCTGTTCCAAACAAGTGTCCAAAGGAGACAACAGCAAAAATCCAGGAGGAGACCCACACTCTCGAAAAGTTCAAGAGTGATTTGGGTTTAGGCGATGAGTCTGTATAACTGGACAAAGGAAGTTCAGCAATGGGCTAATACAGGTAAATGAATACAACAAATAAATAATCCTAAATGTAACTTGACGTAGTGGACAGGCTTGCGTACTCCAATGACCCTGAGAGCTAACCCTTAGAGGGTGTTTTCCACCGGCAGGTGCAATCAAGCCGGACAGGTGGAAGGGTAGGATGCAGACAAACATTCCCTGGTTATCCAGGTTGGGGCTCACTCACCCCCCACATAACAAATCAtatacccccatcgcgacgtcccccaaagactaacttgctagcccctgctaactgctagcttgcctgcccggtctgctaactgtt

Function

NR:

description
PREDICTED: uncharacterized protein LOC106609103 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035541.1 True 3613 mRNA 0.44 4 40588722 40592987

Neighbor

gene id symbol gene type direction distance location
LOC118938288 NA coding upstream 5449 40580691 ~ 40583273 (+)
LOC100136296 LOC100136296 coding upstream 9203 40578421 ~ 40579519 (+)
LOC110486354 LOC106607383 coding upstream 15239 40572568 ~ 40573483 (+)
LOC110486353 LOC106601071 coding upstream 46985 40540811 ~ 40541737 (+)
LOC110486351 LOC106601078 coding upstream 53108 40534711 ~ 40535614 (+)
LOC118936354 NA coding downstream 17292 40610279 ~ 40615060 (+)
LOC118936300 LOC100135791 coding downstream 21310 40614297 ~ 40615287 (+)
LOC118938289 NA coding downstream 25453 40618440 ~ 40619466 (+)
LOC110486355 LOC106601061 coding downstream 29972 40622959 ~ 40623862 (+)
LOC110486361 NA coding downstream 88188 40681175 ~ 40683181 (+)
G1173986 NA non-coding upstream 11519 40576218 ~ 40577203 (+)
G1173987 NA non-coding upstream 16697 40569804 ~ 40572025 (+)
G1173990 NA non-coding upstream 111280 40476588 ~ 40477442 (+)
G1173964 LOC106607368 non-coding upstream 141407 40446307 ~ 40447315 (+)
G1173959 NA non-coding upstream 155584 40432395 ~ 40433138 (+)
G1174047 NA non-coding downstream 31374 40624361 ~ 40624631 (+)
G1174055 NA non-coding downstream 44687 40637674 ~ 40639607 (+)
G1174069 LOC106607387 non-coding downstream 71940 40664927 ~ 40665150 (+)
G1174070 NA non-coding downstream 74188 40667175 ~ 40667968 (+)
G1174071 LOC106601059 non-coding downstream 75085 40668072 ~ 40669829 (+)
polr3k rpc11 other upstream 232749 40354342 ~ 40357833 (+)
G1173715 LOC106601095 other upstream 432543 40080474 ~ 40200482 (+)
G1172996 NA other upstream 1114943 39473458 ~ 39473779 (+)
LOC110486302 LOC106607335 other upstream 1710343 38876161 ~ 38878379 (+)
G1170455 NA other upstream 1998015 38589772 ~ 38590707 (+)
G1174211 NA other downstream 312544 40905531 ~ 40906473 (+)
G1174245 LOC106607208 other downstream 408896 41001883 ~ 41003024 (+)
LOC110486375 LOC106601281 other downstream 462465 41055429 ~ 41065432 (+)
G1175164 NA other downstream 946504 41539491 ~ 41540680 (+)
LOC110486395 ccd56 other downstream 1180503 41773456 ~ 41777013 (+)

Expression


Co-expression Network