LOC110486355 (LOC106601061)


Basic Information

Item Value
gene id LOC110486355
gene name LOC106601061
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40622959 ~ 40623862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557878.2
TACAGACCATATAAATACTCCCAGTGTCCAGTCTTATGGCACCAGTAGTATCTTACGTCATAGAAACCGCTAGAATGAGTCTCACAGCCAAGGACAAACAGATCGTGACAGCCTTTTTTGGAAAGGTGGCTGGCAAAGCAGAGGATATCGGAAATGAGGCTCTCTCTAGGACCTTGGTGGTGTACCCCCAGACCAAGACCTACTTCTCCCACTGGACGGACCTGAGCCCCGGCTCTGCTCCCGTCAAGAAGCACGGTCTGACCGTCATGGGAGGCGTCCTGGATGCCGTGACCAAGATCGACGACCTGACCGGTGGTCTTCTGACCCTCAGCGAGCTGCACGCCTTCACCCTGCGTGTGGATCCCGCCAACTTCAAGATCATCAACCACAACATTCTGGTGGTGCTAGCCATGATGTTCCCTGCTGACTTTACCCCTGAGGTACACGTGTCTGTGGACAAGTTCCTCGCCAAGTTGGCCCTGGCCCTTTCCGAGAAGTATCGTTAAAAGGCGAGAAGATAAATCCTCTCGGGTTTTCTGTGTTGATCATAAATGTGCACGTGTTGTATGATATGAATCATGGAATAAAAATACCGTCATCAACAA

Function

NR:

description
hemoglobin embryonic subunit alpha-like

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557878.2 True 605 mRNA 0.51 3 40622959 40623862

Neighbor

gene id symbol gene type direction distance location
LOC118938289 NA coding upstream 3493 40618440 ~ 40619466 (+)
LOC118936300 LOC100135791 coding upstream 7672 40614297 ~ 40615287 (+)
LOC118936354 NA coding upstream 7899 40610279 ~ 40615060 (+)
LOC118938287 LOC106609103 coding upstream 29972 40588722 ~ 40592987 (+)
LOC118938288 NA coding upstream 39686 40580691 ~ 40583273 (+)
LOC110486361 NA coding downstream 57313 40681175 ~ 40683181 (+)
LOC100136169 LOC106607222 coding downstream 90331 40714193 ~ 40733821 (+)
LOC110486371 LOC106607212 coding downstream 310025 40933887 ~ 40967545 (+)
LOC110486372 LOC106607210 coding downstream 351593 40975455 ~ 40989382 (+)
angptl6 LOC106607207 coding downstream 425582 41049444 ~ 41054649 (+)
G1173986 NA non-coding upstream 45756 40576218 ~ 40577203 (+)
G1173987 NA non-coding upstream 50934 40569804 ~ 40572025 (+)
G1173990 NA non-coding upstream 145517 40476588 ~ 40477442 (+)
G1173964 LOC106607368 non-coding upstream 175644 40446307 ~ 40447315 (+)
G1173959 NA non-coding upstream 189821 40432395 ~ 40433138 (+)
G1174047 NA non-coding downstream 499 40624361 ~ 40624631 (+)
G1174055 NA non-coding downstream 13812 40637674 ~ 40639607 (+)
G1174069 LOC106607387 non-coding downstream 41065 40664927 ~ 40665150 (+)
G1174070 NA non-coding downstream 43313 40667175 ~ 40667968 (+)
G1174071 LOC106601059 non-coding downstream 44210 40668072 ~ 40669829 (+)
polr3k rpc11 other upstream 266986 40354342 ~ 40357833 (+)
G1173715 LOC106601095 other upstream 466780 40080474 ~ 40200482 (+)
G1172996 NA other upstream 1149180 39473458 ~ 39473779 (+)
LOC110486302 LOC106607335 other upstream 1744580 38876161 ~ 38878379 (+)
G1170455 NA other upstream 2032252 38589772 ~ 38590707 (+)
G1174211 NA other downstream 281669 40905531 ~ 40906473 (+)
G1174245 LOC106607208 other downstream 378021 41001883 ~ 41003024 (+)
LOC110486375 LOC106601281 other downstream 431590 41055429 ~ 41065432 (+)
G1175164 NA other downstream 915629 41539491 ~ 41540680 (+)
LOC110486395 ccd56 other downstream 1149628 41773456 ~ 41777013 (+)

Expression


Co-expression Network