LOC110486364 (LOC106601288)


Basic Information

Item Value
gene id LOC110486364
gene name LOC106601288
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40831402 ~ 40843483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557897.2
ATCTGACGGCGTTGTCAGTTTCAGAAAACTTTCAGGCAAAGGTGATGGCGGCCGCGGTGTCCGTTAGCGCAGCTGGCAGAGAAGAAAATCCAAATGCAGGGCCCAATTTCGCTAGCCGTCCATTTCACGAAAACTATGACCCCGCTGTCGAACACGAGAATTGGGTGTCCAGGGATCCCGAACTCGAGCCGAGTGATGGGGATGCATCATCGGACAACGAGTGTCAGCGAAGGGTCGATGAAGAGTTGACGACGCTTAGCCCTGAAGAGATTGAGAGTCGCTTGGACAGAACTCGTCGAGAGTTTTACAATCGCCGGAAAATCATAATAAAAAACCTGCCATCCGATGTTAGCAATCAGGAGGTACATGAGCTGTTGCGCAGCTATGACTTGAAGTACTGCTTTGTGGACAAATACAAGGGAACAGcTTTTGTCACACTGCTCCATGGGGAGCAGGCACAATGTGCCATCAAAGAGTTCCACCAGCACATGCTGCGGGAGCGGGAGATCTCTGTGCAGCTGCAGCCCACCGACGCGCTGCTGTGCATCGCCAACCTGCCCCACGCTTTCTCCCAGCAGCAGTTTGAGGAGCTGGTGAGACCCTTCGGCAACCTAGAGCGCTGCTTCCTGGTCCACAGCGCCTCCACTGGCCACTCCAAGGGCTACGGCTTCGTGGAGTACATGAAGAAGGACTCTGCGGCTAGGGCTAAGTCTGAGCTGCTGGGGAAGCAGCTGGGCTCCAGGATGCTGTACGTCCACTGGACTGAGGTGGGCTCCCTCACCTACCCCCTGCTGCACTCCAGGTGTCTCTGTGTGGACCGTCTGCCCCCCAGCCTACTGACCGCTCAGGACCTCGGCAATGCCCTGGCCGACACGCACGTACCCATCTTTTGCCAGTTGGCTCAGGGCCAGGATGACAGTTTCCGGCGGTTTGCCATGTTGGAGTTCTCCTCGGCAGAGATGGCTGAGCAGGTGCAGAGAGAGGTTGACGGCAGGGCGCTAGGTGGGACCCACATCCGCGTCTCCTTCTGTGCCCCTGGACCCCCGGGAAGAAGCATGCTGGCTGCCCTCATCGCTGCCCAGACCATGGCCCTGAACCGAGGGAAAGGTCTCCTCCCTGAGCCCACAGCCATGCAGATCCTCACAGGCCTCAGTAACCCTGCCACCCTCAAGATGCTGCTCAACCCCCTCACCCAGGGCAGGAAACAAGGTCTCCTTGGTGCTGCTCCCACCATGCCGCTGCTGGCTAACCCCGCCCTGTCTGCTGCTCTGCTGCAGCTCCTCCTCCAGAACCAGGCCCAAGTTCAACAGGCAGGACTGATGGGGGACAACCTTCTGGCTGCTATGCCTCTCCAGCAGGGAGTCCATCTGCTGGGAGACCTGCCTCAAGGTGGTGTGGTTCCATCCCTGGGCCTCCAGTCAGACCCTATGGGCCCCTTAAACCCCCACTCTATGGGTCACCCCCTGGGCAGAGAGTCCCCTACGAGCTTCTCCCAgaacccctctcccactctccaggGCATGTCCATCTCCCACCTGGGTGGTGTGACGGGGGCAGAGGGGCTTACAGCACCTGggGTGTCCATTCTAGGACACCCTCCCAATGATGGGAATCTTCCCCAGAACCCCTTCAATGTCCACAGCCTGTTCCCATCCCCAGGCGCCAACTGCAGGCCCCACCCTTACAGGAAGAGACCAGCGCTAGGCAACTCATCCAACCAGCGCACACAGAACATCCACTGTAACTACAGGCTGCGCTACCAGGAGTCCTACACCCCAGACTACCCCCCAATACACCAGGATCCTCTGGGCCATCTGTATGAACAGCAGGAGGCTCTGGACACTGGAGCTCTGGCAGGGTTCGGACAGCAGCGCTTTGGCCACCCCAGCTACAGTGAGCAGGCCTCCTCCCGCTATAGTTACCCCCCCAGCCCGCCCTCGTCTTCCTACTACAGCTCGGTGGCACCTGGCCCCGGCAGCCTCCCCTCCAGCCATCTCAACAAGGCTGTGGGCATGCCTCCTGTGAGCCACTCGAACATGTACCCTTCTGGTCTGGGAATGAAGACTCCCGTTGGTGGTCACAAGCGTCTGATCCCGTCTCCAGAGCCCAGCCCAGAAGGGGGCTACGTGGGACAACACTCCCAGGGCCTTGGGGGCCACTATGCTGACTCCTACCTGAAACGCAAGCGTATCTTCTAATGGAAACCAATCAACGCCTCTTGTACGAGATGCCAGTTAACAGCCGATGGCTGATGGCTCCACCAATCAGCTTTTAGGTTTGGGCTTGGCAGTCCCAGTGGTCTCTCACTTGTGTTCCTGCCAGCGACCCCCTGGAGCGCGCTGGGGTTGCAGCCTGTCGCTAATCGGGACATAATGCTTGCCAGTGTATGGGagttttgatgttttttttttgtaaatatatgaTTTCAGTGTGCTTGTAAATGAAGTtttatcctttttttttttatgtcttatTTTTTTCTATCAGGAAATCCCTTTGTTTACACACTGGGAGTTACCTTGTACTATAAGAAAATAATCGTAACATCTGATTTCaggtctttttttttcttctgcgtATTCCCTTCATTGATTGGCTAAGcactttttattttaatttttatatTTTGTATTAGTTTTTTTCTTCCTGTTGTGATGGTGTCAACGGGTTTCTATTTTAAAACGTTTTGCCTCCCGATATTTTTGTATATAGTTCATTAGTTTGTTTGATGggatgttttaattttttttcccGCGCGCCTTCCTCCTACAGGGGTTATGTACTGACGGTCTGGACAGAATTCAGGCCTTGGATTCACGTAGATCTGTGTAGCAGTACTGCCTTCCTGTCTTTCAGTCCTTTAGAAGAACTGTCCCCTTACACAACTAGTCTGGAATATGCTGTTTTCAACCCTTCACTCTTCCACCCCTCTGTCTCATTTGGGAGCCTGTTCTCTACACTGAATGTTTGTTGTTGCACTTGGAGGACACGGGCAGATCACAATTCTCCAGGTTTGTTGAATTTCTACGGTTCTCACTCGTTCCCCCCCCATTCTGTTCTCTGCAGAATCTTGTATGTTCTGTGTTGACGTAAGCTCTTTGTCGGCTGAGTATTTGCATCTCAACCACCATGGCACCTGATTTTGCTCTTGTTCATTCGGAGGGGGATGGTAGCTGTGCCTTATCCATACTTTAATATCTACAGATTATGACAGTAAGCAGGGACATCTGTGGCCTCTGTCCACCCAGAGCCTAAACATTAATTAACTGTACTATCATTTATTAATGAGCCATGGCTAGGTTGGCTCCCCTGTGGCTGTCCCTCCCCTGTAGACCAGCAGGGGGGGGCTGTTGATCCTCAGGCTAAACTGAAATTAAATCAAGCTTGACAGTTTCACACTGATGGTTGACAAACTGAAACGGGTAGAATTTCCATTCAGTTTTCCAGTCCAGGAGAAGTTGACTTCCAATCTGAAGTGTTAATACGATGGGAGTGTCCAGGGACTACAAGGTCTGCCTCGGAAGGTTTGCATGGAAATTAAGCTTATGATTGGTCAGTGATTGAGTTCTTAGTCTGTGAAGAATAATCTGGTTGACATTTTGATTGTGATCACCATTACCTCTTGACTTCTGATGGGAACTGCAATTACACTTGAGCCTTaacagttccccccccccccccccccccccctccctctgtcatctcaTCTTCCCCTCTGTGGGCTTTCTGACGACATCCCTTTGTACATACTTTAAAGCTTGATCATTTCCTCTGAGTCCTAAACTCTTGTTTTCTCAATCATATCTTTGGCCTCTGGTCTGTTTTAAGATTGCAACTGCTGCTcaatattttgtgttttttaGTGACCATTACCAAGTGCAGCCACCTGTCTGGTGGTAGATTTCCCCATGTTCTGTATAGACCAACAGGTGCTGCTCGATGATATGAATTAAGATTGCTTTTGTTTTTCCTCATACATGCTGTCTGTCATCTGTACTGCCATATGTCTGTTTTGGCGCAAGTAAATGTTATTTAATTAAAC
>TU1339785
GTCCTCACCTCGCAAACACGGGACTGCCCGCTTGACAACGTACTAGCCAGATGTGCCACCAAAAAGCTTGCAGCTGCGGAGTAAGAGTACGGTACGACCTTAACTTGGTTACATGAGCAGCAGGTTTAATGGCGTCTGGCTCCTCTCTTCCCAGGATCCTCTGGGCCATCTGTATGAACAGCAGGAGGCTCTGGACACTGGAGCTCTGGCAGGGTTCGGACAGCAGCGCTTTGGCCACCCCAGCTACAGTGAGCAGGCCTCCTCCCGCTATAGTTACCCCCCCAGCCCGCCCTCGTCTTCCTACTACAGCTCGGTGGCACCTGGCCCCGGCAGCCTCCCCTCCAGCCATCTCAACAAGGTAGGGTCACACACACTTTTCCTTCCCAATGTAATCAACAGATCGAATGAGGGTTGAGTGTCTGCTCAAAATATAAAGGCTGCCCTCTGTTATTTAGACTTAGCGGAGAGGTCTTGACATCTGTTGGCTAGCCTAGCACCCATGTTGGGGACAATCTAAGTTATGAAACAGTTGGGCTGAAAATGTTAAGTGAAAGTTATTGGCTTAATCTGCGTGTCC

Function

NR:

description
ribonucleoprotein PTB-binding 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557897.2 False 4042 mRNA 0.52 14 40831402 40843483
TU1339785 True 577 TUCP 0.53 2 40833903 40834636

Neighbor

gene id symbol gene type direction distance location
LOC110486363 LOC106607220 coding downstream 55898 40749095 ~ 40775504 (-)
LOC110486362 LOC106607221 coding downstream 88452 40733709 ~ 40742950 (-)
LOC110486360 LOC106607387 coding downstream 131205 40578110 ~ 40700197 (-)
LOC110486359 LOC106601060 coding downstream 170579 40638211 ~ 40660823 (-)
LOC100135790 LOC100135790 coding downstream 200714 40629737 ~ 40630688 (-)
LOC110486365 LOC106607218 coding upstream 568 40844051 ~ 40859686 (-)
LOC110486366 LOC106607217 coding upstream 20323 40863806 ~ 40869040 (-)
LOC110486367 LOC106607216 coding upstream 25668 40869151 ~ 40871662 (-)
LOC110486370 LOC106607215 coding upstream 29178 40872661 ~ 40883905 (-)
LOC110486368 LOC106607214 coding upstream 42200 40885683 ~ 40892391 (-)
G1174844 NA non-coding downstream 82697 40744625 ~ 40748705 (-)
G1174839 NA non-coding downstream 105566 40724686 ~ 40725836 (-)
G1174792 NA non-coding downstream 237530 40592979 ~ 40593872 (-)
G1174706 NA non-coding downstream 289575 40540779 ~ 40541827 (-)
G1174918 NA non-coding upstream 53178 40896661 ~ 40896873 (-)
G1174933 NA non-coding upstream 74396 40917879 ~ 40918146 (-)
G1174973 NA non-coding upstream 126012 40969495 ~ 40969699 (-)
G1174974 NA non-coding upstream 126948 40970431 ~ 40970768 (-)
G1174741 NA other downstream 373721 40456895 ~ 40457681 (-)
G1174658 NA other downstream 514543 40316118 ~ 40316859 (-)
G1173645 NA other downstream 906443 39923922 ~ 39924959 (-)
LOC110486318 kdm8 other downstream 1500163 39328216 ~ 39331966 (-)
LOC110486313 snn other downstream 1581092 39248150 ~ 39250310 (-)
col5a3a LOC106607203 other upstream 441299 41282052 ~ 41362985 (-)
G1175904 LOC106607178 other upstream 1153831 41997314 ~ 41997637 (-)
G1175906 NA other upstream 1155869 41999352 ~ 42000091 (-)
G1176164 NA other upstream 1484561 42328044 ~ 42328572 (-)
LOC110486413 rbx1 other upstream 1609676 42453094 ~ 42456995 (-)

Expression


Co-expression Network