LOC110486365 (LOC106607218)


Basic Information

Item Value
gene id LOC110486365
gene name LOC106607218
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40844051 ~ 40859686 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557899.2
TACAGCTGGTTCAAGGGGAGTGGCCAAAAGTGTCTTTCGGTGTTTTCGTCTTGTAGCTGACTTCTCTATCTGTGCGCTTCGCGGGAATGCGTAGGAGTAGGGGAAACACGCTTTAGGAAATCATAAGAGTGGACTTCGGTTCAACCTGCATTGGATTTTCTAACTACACGTTTTAGGGACGCAACTAAATGGTGTAGTGACTCAGCCTGGTCCATAATGTCTCGAAGTGGCCGCTCCAAGAGTACCAGGACAGGGTCATCCACAGGCCAGTGTGAGCCTCCTCAGGGACCAGGCGTCCATGTCTATCTGTTTTGGACCAAGGGAGGGGAGCGCTATCTGACCCACACAGAGGGTAAAGTGACAGCCGAGGAGCTTTCAATCTCTGCAGCACAGACTGTGGGTATCACTCCACTGTGCCATGTCCTGTTTTCTCTGTATGACCCTGAATCCCACTGCTGGTACAGTCCCAACCATTTCTTCAACCCAGAAGAGCAGACAAGCCTGACACTCCATTATCGCAtgagGTTTTACTTTCGGAATTGGCATGGGTTGAGTGAGAAGGAGCCGTCAGTGTCGCGATATGCCCCACGGTCAGGGACAGAGCACGGGGGCTCACCTCTACTAGAAATGACCTCCCTGGAATACCTCTTCTGCCAGGCAAAGTTTGATTTTGTGAATGATGTCACGCCAATGGAGGATGCTCAAGGAAAGGAAGAGTTGAGTCACTTTAAGAATGAGAGTCTGGGGATGGCTGTGCTGCACCTCTCTCACCAGGCCCTGTGCTCAGGCTGCACGCTACAGGAAGTGGCCAAGTCTGTCAGCTTCCTGCGCTGCATTCCGAGATCCTTCTCCAAACATATAGCGAGGGACAACTTCCTGACCAAGATCCGTATCCGGCGTGTGTTTGCTGACTTTGTGAGGACCTTCCAGGAGCACACTGTGGACTTAGGACGCCTGGGCTCCCAGGAGGTCATGTATAAATACCTGTCTACTCTGGAGCACCTAGCCCCCTGCTTCGGTACCGAGACCTTCCTCGCGGCCCAACTGGAGCTGAGGAAGGACGGGGGCGACGGGAGCGGCTCCTACCTCAACACCAGCCACGCCCACGGGGCCTCTGACCCTGGGAACTTTGGCCCTCAGGTCATGCATGAGGTCATGGTGTCTGGTACCAAGGGGATTCAGTGGAGGAAGATCACAGTGCAGAAGGCCCAGGCCAACAGTTACTTTGGGAACGATTACTTAGGGAATCGGAAAACTGTGAAGCAATCGCCCCTCCAGCAAGAACCTAAATCCTCTGACACATGGACGTCTTTCTGCGACTTCCCGGAAATCTCCCACATCACCATCACTGGAGCCAACGTCAGCATCATTAAACAGGACAACTTCTCTATGgAGGTTCAAATGAATTCCATCCTTGAGGCTCTGTCTTTCGTCTCCCTGCTGGACGGGTACTTCCGGCTTACTGCAGACGCACACCACTACCTGTGTCACGAGGTGGCTCCGCCCAGGGTAGTGCTCAGTGCCACCAATGGCCTCCATGGACCAATGaaTGATGACTTTGTGCTGCAGAGACTGAGGAAGGAAGCAGTTGAAGAGGGAGCCTTTCTTGTGCGCTGGAGCGTCCTCGACTACCACCGCATCATATTAGCTGTTCTAAACAAGAGTCAGAATGGACAAGCTGCAATCCACAAGCAGTTCAGGATCATGCATAGTGGTTCAGTGTTTGCTCTGGAAGGCTGGGACCGGGAGTTCTCCAGTGTCAAGGAGCTCACCGACAGCCTCAAGACCTTTGTGCTCAAGTCTGGCACGGACAATTTCACTGTGAAGAAATGCTGCCTACCCCGACCTGCAGAACTGTCCAACCTCTTGGTGATGAGGCAGGGTGCGGACCAGTGTGTTCAGCCTGACTCTGTGGCCCTCTGTCTGACTCAGCTGAGGTTCCATCAGATCAAAGACAAGGAGATCACCCAGGAGCAGCATCTGGGCCGTGGGACCAGGACCAACATCTACTCTGGCAGTCTGTTGGTGAGGGgcggagtggaggaggaggatgaggaggacaaGTGGAATAACAATCTTACTGATCGCAAAGAGATCCGAGTGGTTCTTAAGATCTTGGACCAGAGCCACAAGGACATAGCGTTAGCGTTCTTTGAAACAGCCAGTCTGATGAGCCAAGTATCTCACAGTCACCTGGTCTTTGTTCACGGCGTGTCTGTCAAAGGATCTGAGAACATCATGGTGGAGGAGTTTGTGGAGTTTGGGCCTCTGGATGTGTTCCTGCGAAGGGAAAGGGCGCTGGTCACCCCTCAGTGGAAATTTACTGTAGCCAAACAGCTGGCCAGTGCCCTGAGCTACCTCGAGACTAAACAACTGGTACATGGTAATGTCTGTGCTAAAAACATTCTGGTGGCTCGCCGTGGTCTGGAGGAGGGCACCTTTCCCTTCATCAAGCTGAGCGATCCAGGCATTGCCCTCAACGTGCTGTCCAGAGAAGAGCGTGTCGAGCGAATCCCATGGATCGCCCCGGAGTGTGTGCCAAGCGGTGCCCCATTCAGCAGTGCTGCCGACCAGTGGAGCTTTGGAGCCACACTGCTGGAGATCTGCAACAATGGAGATTTGCCCATGAGTGGCAGCACGCTCACTGAGAAAGAGCGTTTCTACGAAACGCGGAGTCGCCTCACTGAGCCCTCGTCGCAGGAACTGGCCAGCTTCATTAGCATGTGTTTGACCTACGAACCCCGGGAGAGGCCGTCCTTCCGCACTGTGCTTCGAGAGCTCACTGAACTACAGATCAAGAATCCTGACATATCCCCCCTGGAGTCTCTCCCGGACGCTGACCCCAACGTTTTCCTCAAACGCTACTTGAAAAAGATCCGGGACTTAGGGGAGggtcACTTTGGGAAGGTGATTCTCTATGTGTATGACCCAGCCAACGACGGGACAGGGGACTATGTGGCAGTGAAGACCCTGAAGCATGAGGGAGGCAGCCATCTCAGTGAAGGCTGGATGAAGGAGATTGAGATCCTCAAGTCTCTTTACCACGGCAACATAGTCAAGTACAAGGGCTGCTGCTCTGAGCTGGGAGGGCAGACGGTGCAGCTGATTATGGAGTTCCTACCTCTGGGCAGCCTCAGAGAGTACCTAGCCAAACACCGCCTGGGCGTGGCTCACAGCCTCCTGTTTGCACAGCAGATCTGCCAGGGGATGGATTACCTGCACTCGAAGCGATACATCCACCGGGACTTGGCTGCCCGGAACGTACTGGTGGAGAATGAGCATCTGGTGAAGATCGGGGACTTTGGCCTTACCAAATACATCCCAGAGGGAGATGTTTACTACCGCGTGCGTGAGAATGGAGACAGTCCTGTGTTCTGGTATGCAATTGAGTGTCTGAAGGAGAGCAAGTTTTCCTTCTCTTCAGACATTTGGTCCTTTGGCGTGACGCTCTATGAGGTCCTGACCCACTGTGAATATCGTCAGAGCCCTCCAGTGaAGTTCTTTCAGATGATGGGTAAAGTGAAGGGTCAGATGACGGTGCTGGTGCTGATCAAGCTGCTGGAGAAACACAATAGGTTGCCCTGCCCCCGAGACTGTCCTAGTGAGGTCCGCATGTTGATGCAGCATTGTTGGGACTTTGACCCCGCGAGACGGCCATCTTTCAAATCCCTCATTGAGTCCATCGAAGCGATTCGCAAGACATACGAACGGCAACCCAATGTGCGGCTGTCCCAAATTAGCCAATGAGAACCTTACTTTTTCACAGGCCAGCTGGCCTTACTCCTGTATACCTCAGCACTTTGCTACATAAATCTACTCTAGAGTCTACATCACACCCTGCACCACAGTGCCCTCTGTCTGTTCTGAAGGAGTAGACTGCTCTTTGTATTAATAAATAGGAACTCAGGTTTTTAGTCATTCTCATCCATTCATTCATATAGATGAGCCCTTCGTGATGGCACTTGTTTTATTTTGATGTGACAGATATTATTTTTTTAGGTGTGAAATTCCCTGAATGGCAGCTATAGTGCTGTCTCGGGAGGAGAACCGGGCCCATGTTCCATGACTGATCCAATTTAGGTTCTACATTTTAGCCCGAGAATGGGATCCTCCAACATATGAAATATTTACTAtccagaagaggagaggagctgtCGTTCCACATGATTTGTCACTCATAATGTTCACATGATTAATATAACACTTCAATTGATGCATGTATATTACCAACAGTTTCTCTTTATTTCTGTATTGGTGTAAATATAAAACATTTACTGATTTTATTGTATCATATCATGTTTTTCCCTATGTTTGTATGTATTAAATGTTTGAGTGGGCGAATGTTGAAAATGAAGCATTTGTATCCCTTGACGGTGTTTAATAAATTTGACCGAAGCCCAAAAAAA
>XM_036941089.1
acgagctcagtccgatgatgatgTGACACACCGTCTCAGACCATGATGGACTCTCCACcaccaaatcgatcctgctccagagtacaggcctcgtgtaacgctcattccttcgacgataaacgcaaatccgaccatcacctctgGTGTAGTGACTCAGCCTGGTCCATAATGTCTCGAAGTGGCCGCTCCAAGAGTACCAGGACAGGGTCATCCACAGGCCAGTGTGAGCCTCCTCAGGGACCAGGCGTCCATGTCTATCTGTTTTGGACCAAGGGAGGGGAGCGCTATCTGACCCACACAGAGGGTAAAGTGACAGCCGAGGAGCTTTCAATCTCTGCAGCACAGACTGTGGGTATCACTCCACTGTGCCATGTCCTGTTTTCTCTGTATGACCCTGAATCCCACTGCTGGTACAGTCCCAACCATTTCTTCAACCCAGAAGAGCAGACAAGCCTGACACTCCATTATCGCAtgagGTTTTACTTTCGGAATTGGCATGGGTTGAGTGAGAAGGAGCCGTCAGTGTCGCGATATGCCCCACGGTCAGGGACAGAGCACGGGGGCTCACCTCTACTAGAAATGACCTCCCTGGAATACCTCTTCTGCCAGGCAAAGTTTGATTTTGTGAATGATGTCACGCCAATGGAGGATGCTCAAGGAAAGGAAGAGTTGAGTCACTTTAAGAATGAGAGTCTGGGGATGGCTGTGCTGCACCTCTCTCACCAGGCCCTGTGCTCAGGCTGCACGCTACAGGAAGTGGCCAAGTCTGTCAGCTTCCTGCGCTGCATTCCGAGATCCTTCTCCAAACATATAGCGAGGGACAACTTCCTGACCAAGATCCGTATCCGGCGTGTGTTTGCTGACTTTGTGAGGACCTTCCAGGAGCACACTGTGGACTTAGGACGCCTGGGCTCCCAGGAGGTCATGTATAAATACCTGTCTACTCTGGAGCACCTAGCCCCCTGCTTCGGTACCGAGACCTTCCTCGCGGCCCAACTGGAGCTGAGGAAGGACGGGGGCGACGGGAGCGGCTCCTACCTCAACACCAGCCACGCCCACGGGGCCTCTGACCCTGGGAACTTTGGCCCTCAGGTCATGCATGAGGTCATGGTGTCTGGTACCAAGGGGATTCAGTGGAGGAAGATCACAGTGCAGAAGGCCCAGGCCAACAGTTACTTTGGGAACGATTACTTAGGGAATCGGAAAACTGTGAAGCAATCGCCCCTCCAGCAAGAACCTAAATCCTCTGACACATGGACGTCTTTCTGCGACTTCCCGGAAATCTCCCACATCACCATCACTGGAGCCAACGTCAGCATCATTAAACAGGACAACTTCTCTATGgAGGTTCAAATGAATTCCATCCTTGAGGCTCTGTCTTTCGTCTCCCTGCTGGACGGGTACTTCCGGCTTACTGCAGACGCACACCACTACCTGTGTCACGAGGTGGCTCCGCCCAGGGTAGTGCTCAGTGCCACCAATGGCCTCCATGGACCAATGaaTGATGACTTTGTGCTGCAGAGACTGAGGAAGGAAGCAGTTGAAGAGGGAGCCTTTCTTGTGCGCTGGAGCGTCCTCGACTACCACCGCATCATATTAGCTGTTCTAAACAAGAGTCAGAATGGACAAGCTGCAATCCACAAGCAGTTCAGGATCATGCATAGTGGTTCAGTGTTTGCTCTGGAAGGCTGGGACCGGGAGTTCTCCAGTGTCAAGGAGCTCACCGACAGCCTCAAGACCTTTGTGCTCAAGTCTGGCACGGACAATTTCACTGTGAAGAAATGCTGCCTACCCCGACCTGCAGAACTGTCCAACCTCTTGGTGATGAGGCAGGGTGCGGACCAGTGTGTTCAGCCTGACTCTGTGGCCCTCTGTCTGACTCAGCTGAGGTTCCATCAGATCAAAGACAAGGAGATCACCCAGGAGCAGCATCTGGGCCGTGGGACCAGGACCAACATCTACTCTGGCAGTCTGTTGGTGAGGGgcggagtggaggaggaggatgaggaggacaaGTGGAATAACAATCTTACTGATCGCAAAGAGATCCGAGTGGTTCTTAAGATCTTGGACCAGAGCCACAAGGACATAGCGTTAGCGTTCTTTGAAACAGCCAGTCTGATGAGCCAAGTATCTCACAGTCACCTGGTCTTTGTTCACGGCGTGTCTGTCAAAGGATCTGAGAACATCATGGTGGAGGAGTTTGTGGAGTTTGGGCCTCTGGATGTGTTCCTGCGAAGGGAAAGGGCGCTGGTCACCCCTCAGTGGAAATTTACTGTAGCCAAACAGCTGGCCAGTGCCCTGAGCTACCTCGAGACTAAACAACTGGTACATGGTAATGTCTGTGCTAAAAACATTCTGGTGGCTCGCCGTGGTCTGGAGGAGGGCACCTTTCCCTTCATCAAGCTGAGCGATCCAGGCATTGCCCTCAACGTGCTGTCCAGAGAAGAGCGTGTCGAGCGAATCCCATGGATCGCCCCGGAGTGTGTGCCAAGCGGTGCCCCATTCAGCAGTGCTGCCGACCAGTGGAGCTTTGGAGCCACACTGCTGGAGATCTGCAACAATGGAGATTTGCCCATGAGTGGCAGCACGCTCACTGAGAAAGAGCGTTTCTACGAAACGCGGAGTCGCCTCACTGAGCCCTCGTCGCAGGAACTGGCCAGCTTCATTAGCATGTGTTTGACCTACGAACCCCGGGAGAGGCCGTCCTTCCGCACTGTGCTTCGAGAGCTCACTGAACTACAGATCAAGAATCCTGACATATCCCCCCTGGAGTCTCTCCCGGACGCTGACCCCAACGTTTTCCTCAAACGCTACTTGAAAAAGATCCGGGACTTAGGGGAGggtcACTTTGGGAAGGTGATTCTCTATGTGTATGACCCAGCCAACGACGGGACAGGGGACTATGTGGCAGTGAAGACCCTGAAGCATGAGGGAGGCAGCCATCTCAGTGAAGGCTGGATGAAGGAGATTGAGATCCTCAAGTCTCTTTACCACGGCAACATAGTCAAGTACAAGGGCTGCTGCTCTGAGCTGGGAGGGCAGACGGTGCAGCTGATTATGGAGTTCCTACCTCTGGGCAGCCTCAGAGAGTACCTAGCCAAACACCGCCTGGGCGTGGCTCACAGCCTCCTGTTTGCACAGCAGATCTGCCAGGGGATGGATTACCTGCACTCGAAGCGATACATCCACCGGGACTTGGCTGCCCGGAACGTACTGGTGGAGAATGAGCATCTGGTGAAGATCGGGGACTTTGGCCTTACCAAATACATCCCAGAGGGAGATGTTTACTACCGCGTGCGTGAGAATGGAGACAGTCCTGTGTTCTGGTATGCAATTGAGTGTCTGAAGGAGAGCAAGTTTTCCTTCTCTTCAGACATTTGGTCCTTTGGCGTGACGCTCTATGAGGTCCTGACCCACTGTGAATATCGTCAGAGCCCTCCAGTGaAGTTCTTTCAGATGATGGGTAAAGTGAAGGGTCAGATGACGGTGCTGGTGCTGATCAAGCTGCTGGAGAAACACAATAGGTTGCCCTGCCCCCGAGACTGTCCTAGTGAGGTCCGCATGTTGATGCAGCATTGTTGGGACTTTGACCCCGCGAGACGGCCATCTTTCAAATCCCTCATTGAGTCCATCGAAGCGATTCGCAAGACATACGAACGGCAACCCAATGTGCGGCTGTCCCAAATTAGCCAATGAGAACCTTACTTTTTCACAGGCCAGCTGGCCTTACTCCTGTATACCTCAGCACTTTGCTACATAAATCTACTCTAGAGTCTACATCACACCCTGCACCACAGTGCCCTCTGTCTGTTCTGAAGGAGTAGACTGCTCTTTGTATTAATAAATAGGAACTCAGGTTTTTAGTCATTCTCATCCATTCATTCATATAGATGAGCCCTTCGTGATGGCACTTGTTTTATTTTGATGTGACAGATATTATTTTTTTAGGTGTGAAATTCCCTGAATGGCAGCTATAGTGCTGTCTCGGGAGGAGAACCGGGCCCATGTTCCATGACTGATCCAATTTAGGTTCTACATTTTAGCCCGAGAATGGGATCCTCCAACATATGAAATATTTACTAtccagaagaggagaggagctgtCGTTCCACATGATTTGTCACTCATAATGTTCACATGATTAATATAACACTTCAATTGATGCATGTATATTACCAACAGTTTCTCTTTATTTCTGTATTGGTGTAAATATAAAACATTTACTGATTTTATTGTATCATATCATGTTTTTCCCTATGTTTGTATGTATTAAATGTTTGAGTGGGCGAATGTTGAAAATGAAGCATTTGTATCCCTTGACGGTGTTTAATAAATTTGACCGAAGCCCAAAAAAA
>TU1339825
tgctagagggtcatgtcaggatgagcctgcaggaagggtagaacatgagggaggaggatgtcttccctgtaacgcacagcgttgatatTGCCTGCAATTAGAacgagctcagtccgatgatgatgTGACACACCGTCTCAGACCATGATGGACTCTCCACcaccaaatcgatcctgctccagagtacaggcctcgtgtaacgctcattccttcgacgataaacgcaaatccgaccatcacctctggtgagacaaaaacgcaactcgtcagtgaaaagcactttttgccaatcatgtctggtccagcgacggtgggtttgtgcccataggcgacgttgccggtgatgtctgatgTCTTGTAGgcctacaacaggcctacaagtgctcagtccagcctctcttagcctattgcgggcagtctgagcactgatggagggattgcgttcctggtgtaactcgggcagttgttgttgccatcctgtatctgtcccgcagatgtgatgttcggatgtaccaatcctgtgcaggtgttgttacatgtgttctgccactgcgaggacgatcagctgtccatcctgtctccctgtagcgctgtcttaggcgtctcaaggtactgacattgcaatttattgccctggccacatctcaGTCATCAtccctccttgcagcatgcctaaggcacgttcatgcagatgagcagggaccctgggcatctttcttttggtgtttttcagagtcagtagaaaggcgtgtttagtgtcctaagttttcataac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557899.2 False 4406 mRNA 0.51 24 40844051 40857251
XM_036941089.1 False 4358 mRNA 0.51 24 40844051 40859584
TU1339825 True 775 lncRNA 0.51 1 40858912 40859686

Neighbor

gene id symbol gene type direction distance location
LOC110486364 LOC106601288 coding downstream 568 40831402 ~ 40843483 (-)
LOC110486363 LOC106607220 coding downstream 68547 40749095 ~ 40775504 (-)
LOC110486362 LOC106607221 coding downstream 101101 40733709 ~ 40742950 (-)
LOC110486360 LOC106607387 coding downstream 143854 40578110 ~ 40700197 (-)
LOC110486359 LOC106601060 coding downstream 183228 40638211 ~ 40660823 (-)
LOC110486366 LOC106607217 coding upstream 4222 40863806 ~ 40869040 (-)
LOC110486367 LOC106607216 coding upstream 9567 40869151 ~ 40871662 (-)
LOC110486370 LOC106607215 coding upstream 13077 40872661 ~ 40883905 (-)
LOC110486368 LOC106607214 coding upstream 26099 40885683 ~ 40892391 (-)
eif3g LOC106607209 coding upstream 130003 40989587 ~ 40993993 (-)
G1174844 NA non-coding downstream 95346 40744625 ~ 40748705 (-)
G1174839 NA non-coding downstream 118215 40724686 ~ 40725836 (-)
G1174792 NA non-coding downstream 250179 40592979 ~ 40593872 (-)
G1174706 NA non-coding downstream 302224 40540779 ~ 40541827 (-)
G1174918 NA non-coding upstream 37077 40896661 ~ 40896873 (-)
G1174933 NA non-coding upstream 58295 40917879 ~ 40918146 (-)
G1174973 NA non-coding upstream 109911 40969495 ~ 40969699 (-)
G1174974 NA non-coding upstream 110847 40970431 ~ 40970768 (-)
G1174975 NA non-coding upstream 111405 40970989 ~ 40971211 (-)
G1174741 NA other downstream 386370 40456895 ~ 40457681 (-)
G1174658 NA other downstream 527192 40316118 ~ 40316859 (-)
G1173645 NA other downstream 919092 39923922 ~ 39924959 (-)
LOC110486318 kdm8 other downstream 1512812 39328216 ~ 39331966 (-)
col5a3a LOC106607203 other upstream 425198 41282052 ~ 41362985 (-)
G1175904 LOC106607178 other upstream 1137730 41997314 ~ 41997637 (-)
G1175906 NA other upstream 1139768 41999352 ~ 42000091 (-)
G1176164 NA other upstream 1468460 42328044 ~ 42328572 (-)
LOC110486413 rbx1 other upstream 1593575 42453094 ~ 42456995 (-)

Expression

LOC110486365(LOC106607218) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110486365(LOC106607218) Expression in each Bioproject

Bar chart with 21 bars.
LOC110486365(LOC106607218) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network