LOC110486370 (LOC106607215)


Basic Information

Item Value
gene id LOC110486370
gene name LOC106607215
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40872661 ~ 40883905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557903.2
GCAATTTAATCTGACATGGCAACCCATGGATGGATAGAGGATGTGTACTCGTGTGGGAAAGCGTTTGTGTGCTCTGCTGCTTTTAGTTTCGATTACCATAGTTATACGTTTTCAAGGTGACGGTCAACATTGGGATATATTTGCCGGATAAAATAAATATGGTGAAAGGACTTTATGGATTTCTGACACTCGGTGTGTTGGTGTTTACAGGTGGGCCTACACATGCCTCCTTTCCTCTTGAGCTCAACCCTCCCAGAGTGGTGGTGAGATATGGAGACTCAGTCTCAGTCAACTGCAGCACATCATCCACAGACCATGAGGGGATGGGCTGGGAGGCCACATTCGGAGGTAAAAGTTTAGAAGAACATGTCAACCTTGTCACCTGGACTGTGGATAACCTTACTGATTGGACAATAGAACCCAAATGCTACATCAATCTCATTGACGGCGAACAACCCTCAAAAGTACTTCCAGTCATTCTCTACAAGACTCCAGACAGCGTCTCCATCTCTGTTCTGAGACACTCTGGTCCCATGGTGGAGGGGACACAGTACCAGCTGCAGTGTGACATTCAGAACATCGCTCCTCTACAGAACCTGGTTGTGAAGTGGTACAAAGGGAATGAACTCTTAGATAATGTAACTTACAGTAACGTCAGTAAGAGACCAGAGGATGTGTCAGCTACTCTGATGATCAGCCCCAGTAGAGATGATGATGGAGATCAGTATAGATGTAGAGCAGAACTGGACCTGGGACCAGAGGGACCACAACCCCATCCTACAGTGACATCAGAACCTCTCAGCATTACTGTGCACTACCCCCCAACCTTTTCCAGACCTGAAGCTGAGAACCTGGACATCAGAGTGGGGGAGGAAATCACCTTAAACTGCACGGCTACTGGAAGGCCCACTCCTCTGTACAGGTGGCAGTCTTCAGATTTCCAAGAAGCTCTTTTCACCCCCCCGTCCGAGGTCCCAGGAACCTACACCTGCACTGCCTACAATCAGATAGGCAAGATCAGCAAGACATTCACTGTGAATCCCAAACCTAAAGGGGACAGAACAACGTTCTGGGTCATCATAGGATCGGGCCTGGGCCTGGCCATTGTGGTTGTGATTGTCTATGCCATTGTCAAATACAGAGCAGGTCCCAACTCCATCATCTGACCAGGCCAGAGGAAGAGCAATTCTATCGCCAGTGTGACCAGCAGGACTTCCTCAATAGACACTGTATGAATAAGAATGGTTGTTTATTGAATTATTATGATGGAACGCTTCAATCCCGCATGGCTTATAACTCCAAAGAGTGCTTTCTATTAGCCTTCTCCAACCAATAGCTTTGTGCCATTTGGACGTGGTGATGCGTTGTTTTGAATGTGTCTTGGGCTGTGTCCGTGTGAGCATGTTGCGCAACACTACAAACCATTCattcacatgcatgtgtgtcCTGTTTTACTACTTATTTTATAATCAAGCATACCTGAATGTAGTCTCTTCTCACAGCCACTGTGTCTCTGTCACGCAGGTAAAGCGGCTGTATAAACAGGCTAGCCTGATCGCTGTAGTCCGATGACCGCACCAAGTGACCTTATGTGACTATACAGTGAGAAATGAGCCATGCAATGCATCACTTCCTGTCTAATgccttttttttttcttgttgCTCTAAAATGGTGGTACCAGAGCCTTTTAACCGATTTAAGTTTGCTGGTCCAAGAGCCACAGGAAGCTTCTCTTCACTATTGCTAATTTTGTTCTCTGCCCACATGCTTCCGCTATCTCTCTTTTACCGTCACAGCACCCTTGATTCTCAGTAATGTCAGTATGTTTGATGATAGCTTTAATTGTTTGTCTTTCACTTTCTCAACCTATATCTGCAGACCATAGAGAAGCGAACATGCATACTGACATGAATCCCATGGACGCAGTCTCCGGGCTGTGAGGAGAGAAAGGCCACTGATGTGTTTTATCTATCTCAGGTATTTTAATAGTCTACACAGTCATAACTCACCATACGTGGCTCACATGGTCCTTTACGATGTTGCtatacagtgtgttagtagaaacAATACTCTGTTTTGACGAGTGGAGTGGCACAGTCCTTTAAATCGTTGTCTTTTTTTGTTGGATCACAGaggtttgtttttattttttgtataaCAATTTTAAAACATTCATGCTAGATATTTCAAGGTATGGGTACAGTGTTAAGTGCAAAGTATGTTCAGTTCACGTTGTACAGGGCTGGAATAGCATTGGTACAGTTGCAAATGGTGCTTGTAAGGTGCACAGAACTATTTGAGTTGCATGATGTAAACTAGCTTTTTACATGTGATGTTTGTGTTGTGTCGCTAACTAACTATGTGTATATTGTCCATTTGATTTCAGCACTGAATGTTGTTATATGCTGTCTTTAACAGTCGCTAACACTCATTCTCTACtttatttagacatttttgtcaGCTTGCTTATGTTTATATGACCCGTGATATGTGTGTGTTTCCATCTGACTGATCTTCCTTTCAGACATTTAGTTATCTATTCGGAATGTCGGTACTTGTTAGGCTCAGCATTGTCAGAGATTCAGTTTCAGGAAGTGTTCTGCTGCAACCTATTTAGGTTAGAATGATGCTGTCTTTCATTTCCATTTCAATAGTGCTGCAAAATTGGTGGACAGTTTTACATCGACAATGCAGGAGATGTTTACCATGCATACACAGCATTCGCTGTCAAACATCAACCAGCTATGCTCATTGAGTTAAAGTTTTGAAAGAATCAGTCTTTCACTGTGACATGTTCCTCTACTGTATTTTGTATGCCATTGGGAACCTTTCTCTCATACATCACTGTAACACTGACACATCAATACTAATCACTACAAACTAAGGTCCATGTAAAGCGACGCATGGAAGTCCATCTGTTATCCTGCCTACGGTGGCTCATATAAATACTTCCTTTTTCAGAA
>XM_036941090.1
cgatttgattgtccgttttatgtgtggattaattgtcggagtagaggaccttgtgcatttcagGTGGGCCTACACATGCCTCCTTTCCTCTTGAGCTCAACCCTCCCAGAGTGGTGGTGAGATATGGAGACTCAGTCTCAGTCAACTGCAGCACATCATCCACAGACCATGAGGGGATGGGCTGGGAGGCCACATTCGGAGGTAAAAGTTTAGAAGAACATGTCAACCTTGTCACCTGGACTGTGGATAACCTTACTGATTGGACAATAGAACCCAAATGCTACATCAATCTCATTGACGGCGAACAACCCTCAAAAGTACTTCCAGTCATTCTCTACAAGACTCCAGACAGCGTCTCCATCTCTGTTCTGAGACACTCTGGTCCCATGGTGGAGGGGACACAGTACCAGCTGCAGTGTGACATTCAGAACATCGCTCCTCTACAGAACCTGGTTGTGAAGTGGTACAAAGGGAATGAACTCTTAGATAATGTAACTTACAGTAACGTCAGTAAGAGACCAGAGGATGTGTCAGCTACTCTGATGATCAGCCCCAGTAGAGATGATGATGGAGATCAGTATAGATGTAGAGCAGAACTGGACCTGGGACCAGAGGGACCACAACCCCATCCTACAGTGACATCAGAACCTCTCAGCATTACTGTGCACTACCCCCCAACCTTTTCCAGACCTGAAGCTGAGAACCTGGACATCAGAGTGGGGGAGGAAATCACCTTAAACTGCACGGCTACTGGAAGGCCCACTCCTCTGTACAGGTGGCAGTCTTCAGATTTCCAAGAAGCTCTTTTCACCCCCCCGTCCGAGGTCCCAGGAACCTACACCTGCACTGCCTACAATCAGATAGGCAAGATCAGCAAGACATTCACTGTGAATCCCAAACCTAAAGGGGACAGAACAACGTTCTGGGTCATCATAGGATCGGGCCTGGGCCTGGCCATTGTGGTTGTGATTGTCTATGCCATTGTCAAATACAGAGCAGGTCCCAACTCCATCATCTGACCAGGCCAGAGGAAGAGCAATTCTATCGCCAGTGTGACCAGCAGGACTTCCTCAATAGACACTGTATGAATAAGAATGGTTGTTTATTGAATTATTATGATGGAACGCTTCAATCCCGCATGGCTTATAACTCCAAAGAGTGCTTTCTATTAGCCTTCTCCAACCAATAGCTTTGTGCCATTTGGACGTGGTGATGCGTTGTTTTGAATGTGTCTTGGGCTGTGTCCGTGTGAGCATGTTGCGCAACACTACAAACCATTCattcacatgcatgtgtgtcCTGTTTTACTACTTATTTTATAATCAAGCATACCTGAATGTAGTCTCTTCTCACAGCCACTGTGTCTCTGTCACGCAGGTAAAGCGGCTGTATAAACAGGCTAGCCTGATCGCTGTAGTCCGATGACCGCACCAAGTGACCTTATGTGACTATACAGTGAGAAATGAGCCATGCAATGCATCACTTCCTGTCTAATgccttttttttttcttgttgCTCTAAAATGGTGGTACCAGAGCCTTTTAACCGATTTAAGTTTGCTGGTCCAAGAGCCACAGGAAGCTTCTCTTCACTATTGCTAATTTTGTTCTCTGCCCACATGCTTCCGCTATCTCTCTTTTACCGTCACAGCACCCTTGATTCTCAGTAATGTCAGTATGTTTGATGATAGCTTTAATTGTTTGTCTTTCACTTTCTCAACCTATATCTGCAGACCATAGAGAAGCGAACATGCATACTGACATGAATCCCATGGACGCAGTCTCCGGGCTGTGAGGAGAGAAAGGCCACTGATGTGTTTTATCTATCTCAGGTATTTTAATAGTCTACACAGTCATAACTCACCATACGTGGCTCACATGGTCCTTTACGATGTTGCtatacagtgtgttagtagaaacAATACTCTGTTTTGACGAGTGGAGTGGCACAGTCCTTTAAATCGTTGTCTTTTTTTGTTGGATCACAGaggtttgtttttattttttgtataaCAATTTTAAAACATTCATGCTAGATATTTCAAGGTATGGGTACAGTGTTAAGTGCAAAGTATGTTCAGTTCACGTTGTACAGGGCTGGAATAGCATTGGTACAGTTGCAAATGGTGCTTGTAAGGTGCACAGAACTATTTGAGTTGCATGATGTAAACTAGCTTTTTACATGTGATGTTTGTGTTGTGTCGCTAACTAACTATGTGTATATTGTCCATTTGATTTCAGCACTGAATGTTGTTATATGCTGTCTTTAACAGTCGCTAACACTCATTCTCTACtttatttagacatttttgtcaGCTTGCTTATGTTTATATGACCCGTGATATGTGTGTGTTTCCATCTGACTGATCTTCCTTTCAGACATTTAGTTATCTATTCGGAATGTCGGTACTTGTTAGGCTCAGCATTGTCAGAGATTCAGTTTCAGGAAGTGTTCTGCTGCAACCTATTTAGGTTAGAATGATGCTGTCTTTCATTTCCATTTCAATAGTGCTGCAAAATTGGTGGACAGTTTTACATCGACAATGCAGGAGATGTTTACCATGCATACACAGCATTCGCTGTCAAACATCAACCAGCTATGCTCATTGAGTTAAAGTTTTGAAAGAATCAGTCTTTCACTGTGACATGTTCCTCTACTGTATTTTGTATGCCATTGGGAACCTTTCTCTCATACATCACTGTAACACTGACACATCAATACTAATCACTACAAACTAAGGTCCATGTAAAGCGACGCATGGAAGTCCATCTGTTATCCTGCCTACGGTGGCTCATATAAATACTTCCTTTTTCAGAA

Function

NR:

description
intercellular adhesion molecule 1-like

GO: NA

KEGG:

id description
K06523 ICAM2, CD102; intercellular adhesion molecule 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557903.2 False 2964 mRNA 0.43 5 40872661 40877949
XM_036941090.1 True 2817 mRNA 0.44 5 40872661 40883905

Neighbor

gene id symbol gene type direction distance location
LOC110486367 LOC106607216 coding downstream 999 40869151 ~ 40871662 (-)
LOC110486366 LOC106607217 coding downstream 3621 40863806 ~ 40869040 (-)
LOC110486365 LOC106607218 coding downstream 13077 40844051 ~ 40859686 (-)
LOC110486364 LOC106601288 coding downstream 29178 40831402 ~ 40843483 (-)
LOC110486363 LOC106607220 coding downstream 97157 40749095 ~ 40775504 (-)
LOC110486368 LOC106607214 coding upstream 1778 40885683 ~ 40892391 (-)
eif3g LOC106607209 coding upstream 105682 40989587 ~ 40993993 (-)
p2ry11 LOC106601184 coding upstream 115965 40999870 ~ 41001821 (-)
ppan LOC106607208 coding upstream 117958 41001863 ~ 41006451 (-)
LOC110485175 LOC106601278 coding upstream 249044 41132949 ~ 41250343 (-)
G1174844 NA non-coding downstream 123956 40744625 ~ 40748705 (-)
G1174839 NA non-coding downstream 146825 40724686 ~ 40725836 (-)
LOC110486360 LOC106607387 non-coding downstream 210827 40578110 ~ 40700197 (-)
G1174918 NA non-coding upstream 12756 40896661 ~ 40896873 (-)
G1174933 NA non-coding upstream 33974 40917879 ~ 40918146 (-)
G1174973 NA non-coding upstream 85590 40969495 ~ 40969699 (-)
G1174974 NA non-coding upstream 86526 40970431 ~ 40970768 (-)
G1174975 NA non-coding upstream 87084 40970989 ~ 40971211 (-)
G1174741 NA other downstream 414980 40456895 ~ 40457681 (-)
G1174658 NA other downstream 555802 40316118 ~ 40316859 (-)
G1173645 NA other downstream 947702 39923922 ~ 39924959 (-)
LOC110486318 kdm8 other downstream 1541422 39328216 ~ 39331966 (-)
col5a3a LOC106607203 other upstream 400877 41282052 ~ 41362985 (-)
G1175904 LOC106607178 other upstream 1113409 41997314 ~ 41997637 (-)
G1175906 NA other upstream 1115447 41999352 ~ 42000091 (-)
G1176164 NA other upstream 1444139 42328044 ~ 42328572 (-)
LOC110486413 rbx1 other upstream 1569254 42453094 ~ 42456995 (-)

Expression


Co-expression Network