Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110486372 |
| gene name | LOC106607210 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 40975455 ~ 40989382 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| DNA (cytosine-5)-methyltransferase 1-like isoform X3 |
| id | description |
|---|---|
| K00558 | DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021557909.2 | False | 4970 | mRNA | 0.52 | 35 | 40975455 | 40989382 |
| XM_021557910.2 | False | 4967 | mRNA | 0.52 | 35 | 40975455 | 40989382 |
| XM_021557911.2 | True | 4954 | mRNA | 0.53 | 34 | 40975456 | 40989382 |
40,974,000
40,976,000
40,978,000
40,980,000
40,982,000
40,984,000
40,986,000
40,988,000
40,990,000
40,992,000
40,994,000
40,996,000
40,998,000
41,000,000
41,002,000
41,004,000
41,006,000
NC_048577.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486371 | LOC106607212 | coding | upstream | 7910 | 40933887 ~ 40967545 (+) |
| LOC100136169 | LOC106607222 | coding | upstream | 241634 | 40714193 ~ 40733821 (+) |
| LOC110486361 | NA | coding | upstream | 292274 | 40681175 ~ 40683181 (+) |
| LOC110486355 | LOC106601061 | coding | upstream | 351593 | 40622959 ~ 40623862 (+) |
| LOC118938289 | NA | coding | upstream | 355989 | 40618440 ~ 40619466 (+) |
| angptl6 | LOC106607207 | coding | downstream | 60062 | 41049444 ~ 41054649 (+) |
| LOC110486375 | LOC106601281 | coding | downstream | 66047 | 41055429 ~ 41065432 (+) |
| trip10a | LOC106601280 | coding | downstream | 76112 | 41065494 ~ 41087276 (+) |
| LOC110486378 | LOC106601275 | coding | downstream | 391112 | 41380494 ~ 41390385 (+) |
| notch3 | LOC108243718 | coding | downstream | 471007 | 41460389 ~ 41507736 (+) |
| G1174236 | NA | non-coding | upstream | 3187 | 40972005 ~ 40972268 (+) |
| G1174235 | NA | non-coding | upstream | 4215 | 40971007 ~ 40971240 (+) |
| G1174219 | NA | non-coding | upstream | 42426 | 40932744 ~ 40933029 (+) |
| G1174203 | NA | non-coding | upstream | 78929 | 40896306 ~ 40896526 (+) |
| G1174193 | NA | non-coding | upstream | 84339 | 40885714 ~ 40891116 (+) |
| G1174241 | eif3g | non-coding | downstream | 205 | 40989587 ~ 40990177 (+) |
| G1174249 | NA | non-coding | downstream | 17843 | 41007225 ~ 41007451 (+) |
| G1174253 | NA | non-coding | downstream | 57138 | 41046520 ~ 41046763 (+) |
| G1174247 | NA | non-coding | downstream | 65292 | 41054674 ~ 41055079 (+) |
| G1174211 | NA | other | upstream | 68982 | 40905531 ~ 40906473 (+) |
| polr3k | rpc11 | other | upstream | 619482 | 40354342 ~ 40357833 (+) |
| G1173715 | LOC106601095 | other | upstream | 819276 | 40080474 ~ 40200482 (+) |
| G1172996 | NA | other | upstream | 1501676 | 39473458 ~ 39473779 (+) |
| LOC110486302 | LOC106607335 | other | upstream | 2097076 | 38876161 ~ 38878379 (+) |
| G1174245 | LOC106607208 | other | downstream | 12501 | 41001883 ~ 41003024 (+) |
| G1175164 | NA | other | downstream | 550109 | 41539491 ~ 41540680 (+) |
| LOC110486395 | ccd56 | other | downstream | 784108 | 41773456 ~ 41777013 (+) |
| G1175317 | LOC106601258 | other | downstream | 804978 | 41794360 ~ 41794807 (+) |
