LOC110486381 (mfap4)


Basic Information

Item Value
gene id LOC110486381
gene name mfap4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41508313 ~ 41509644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557923.2
CTTTGGATGTGCTCATTCTACTACTCCCAGTGGCAGTCAATACTCTACCGTACGATATCATGCCAGTGGATTGTGCTGATGTGTATAGAAGGGGCTTTGGACACAGTGGAGTGTACACCATCTACCCTGCAGGAACAACCTCCCCCATCCAGGTCTACTGTGACATGGGCTGTGAAACCAACCTGGGGGGGGGGAAATGGACAGTGATCCAGAAGAGAAAGGATGGGACAGTGAACTTTTACCGTGGATGGGACCAATACAGGAGTGGGTTTGGGCAGGCTTCTGGAGAGTACTGGTTAGGCCTAGAAAACATCCATCTCCTCACTCAGAGGAAGAAGTATGAGTTGAGGGTGGACCTGGAGGACTTCGAAGGGGCTAAAGCCCACGTGCAGTACTCCTCCTTCTCTGTCGACTCTGAGCATGAAGGATACAAGCTGCATTTAAGTGGCTTCAAAGATGGAGGTGCTGGAAAATCTATGGATGAACACAATGGGCAGAAGTTCTCCACCTTCGATAAAGACCAGGACACTTACGTTTCAAACTGTGCTAAATCATATCTAGGAGGATGGTGGTATGGAGAATGCCACAGTGTCAATCCCAACGGGGTATATCTGTGGGGCGACTCAATCTATGGTATTGGTATCAACTGGGTGAATTGGAAAGGTTATAAATACTCTTTAAAAGCCATTGAAATGAAGATAAGGCCAGTGGAATAAGTTCACAACCCCTCACACTCACACTTCACATAAAAATATTACCTTTCAAATTATGAAAATATTTGGAAAGCCACTGaagtttaaacattttaaagCTAATAAATTGAAGGGAAAAAAGC

Function

symbol description
mfap4 Predicted to enable antigen binding activity; carbohydrate derivative binding activity; and signaling receptor binding activity. Involved in elastic fiber assembly; regulation of collagen metabolic process; and response to UV. Located in several cellular components, including collagen-containing extracellular matrix; elastic fiber; and microfibril.

NR:

description
microfibril-associated glycoprotein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557923.2 True 835 mRNA 0.45 5 41508313 41509644

Neighbor

gene id symbol gene type direction distance location
notch3 LOC108243718 coding upstream 577 41460389 ~ 41507736 (+)
LOC110486378 LOC106601275 coding upstream 117928 41380494 ~ 41390385 (+)
trip10a LOC106601280 coding upstream 421037 41065494 ~ 41087276 (+)
LOC110486375 LOC106601281 coding upstream 443827 41055429 ~ 41065432 (+)
angptl6 LOC106607207 coding upstream 453664 41049444 ~ 41054649 (+)
LOC118938292 NA coding downstream 4811 41514455 ~ 41514997 (+)
shfl LOC106607198 coding downstream 15227 41524871 ~ 41529749 (+)
LOC110486386 LOC106607191 coding downstream 72054 41581698 ~ 41594890 (+)
LOC110486388 LOC106607193 coding downstream 84847 41594491 ~ 41603120 (+)
LOC110486389 LOC106607190 coding downstream 98274 41607918 ~ 41610175 (+)
G1174442 NA non-coding upstream 97534 41410518 ~ 41410779 (+)
G1174441 NA non-coding upstream 98042 41410035 ~ 41410271 (+)
G1174440 NA non-coding upstream 100184 41407827 ~ 41408129 (+)
G1174430 NA non-coding upstream 116805 41391044 ~ 41391508 (+)
G1174426 NA non-coding upstream 129074 41379039 ~ 41379239 (+)
G1175192 NA non-coding downstream 25494 41535138 ~ 41535871 (+)
G1175204 NA non-coding downstream 50273 41559917 ~ 41560138 (+)
G1175206 NA non-coding downstream 51682 41561326 ~ 41561542 (+)
G1175217 NA non-coding downstream 94768 41604412 ~ 41604623 (+)
G1175218 NA non-coding downstream 95355 41604999 ~ 41605218 (+)
G1174245 LOC106607208 other upstream 505289 41001883 ~ 41003024 (+)
G1174211 NA other upstream 601840 40905531 ~ 40906473 (+)
polr3k rpc11 other upstream 1152340 40354342 ~ 40357833 (+)
G1173715 LOC106601095 other upstream 1352134 40080474 ~ 40200482 (+)
G1175164 NA other downstream 29847 41539491 ~ 41540680 (+)
LOC110486395 ccd56 other downstream 263846 41773456 ~ 41777013 (+)
G1175317 LOC106601258 other downstream 284716 41794360 ~ 41794807 (+)
G1175346 NA other downstream 347545 41857189 ~ 41859343 (+)
G1175667 NA other downstream 416631 41926275 ~ 41926656 (+)

Expression


Co-expression Network