LOC110486389 (LOC106607190)


Basic Information

Item Value
gene id LOC110486389
gene name LOC106607190
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41607918 ~ 41610175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557938.2
CAGTCGCGCTCAGCACCTTTGGTTCCATTCCTTGTCTGGAGATTCGAGTAGAGGGACGCTGGTGGTTCTAGCACCGCTTCTTTTGGAATTATTCTTCTTCTCCAGTGTGGATTTGTGCTTGTCTGTGTTGGAATTATGTTGTCTGATTCAATACAGACACGCTATACAGGTCATCGGTGAGTCCGGTTGTCTGCCTCCTGGTCTGCAGCTACTGCCTTTGAAGTAGGTGTGAATGCTTCATCTCTCTggagacacccaccacctccctGACTAGTCTGCCACCTCACTATCAGGACCAGGCAACCAGCCAGAATGGGCAACCAACTAACAGAGATCGCCCCCAACACTGCTTTCCTCCCCAACTTCCAGTCTCTGCATGTGGTCGTCATCGGCCTGGACTCTGCAGGAAAGACCTCCCTTCTGTACAGACTAAAACTCCGGGAGTTTGTGGAGACCATCCCCACAAAGGGCTTCAACACTGAAAGGATTAAAGTAGCAGTTGGAAGCTCGCGGGCCACCACCACCTTCCAGGTGTGGGACGTGGGCGGTCAGGAGAAGCTGCGGCCCCTGTGGAAGTCATACACACGTCGCACCGATGGCCTGGTGTTTGTTGTGGATGCTGCAGAGGCTGAGCGCATGGAGGAGGCCAAGGTGGAGCTCCACCGCATCAGTCGCTCGGCAGAGAACCAGGGAGTACCAATTCTGGTGCTTGCCAACAAGCAGGACTTGGACTCTGCAGTCTCTGCTGTGGAGGTGGAGAAGGCCTTGGCCCTCCACGAGCTTAGCAACTGCACACTGCACCACACCCAGGGATGCAGCGCGCTGAATGGCCAGGGGCTCCAACCCGGCCTGGAGAAACTATATGAAATGATCCTAAAGAGGAAGAAGCTGCTCAGACACAGTAAGAAGAAGAGATGAGCTGTGCCTCTGAGCTTCTGAAAGGCGCTTCGCCTGCAGAATGGACCTCGTTGGTGTTCCTTGGAATTTTATGGGAAATTTGTGCCCCGAAGGATCTGCTTCTGGTTTCCCAGTGACGGTCAGTCCAGAGGACAGAGAAATGGACCTGTTATACTATACGTTGGACACAGCACGGACTACGTTCAGCCCTTTACAGTGGCTCTTTTGTTCTATAAACATTGCCATCTCCTTTTTTATCAAGTTGTGGTGCCAACACGGTCTAGTCCAAACGTCCAGTGACGTATGGTACTTCTAATTTAGTTTACCTTGTAGTTCACTTTGTTTCATGGAGGTGGTTCACCTTTGGAAAAGACAACGCTTTTGTAGATCAAAAGAGGGACTGTATTTCAACCCACTGTTCGGATGGCATTTGAACTGAAATGCCTGCTGGCACGAGGCCTGAGGCTGCTAGCCATGATGCAAGTTTTCACCACAGTTTTGCTTGTCATGATAGACTTAAATGTGTGAAGTTGTTACAACCAATATGTTTTTACATTCTGtacatatttttttgtaatactTACAAGTGAATAAATTATTGAATACACTA
>TU1340176
AGATTCGAGTAGAGGGACGCTGGTGGTTCTAGCACCGCTTCTTTTGGAATTATTCTTCTTCTCCAGTGTGGATTTGTGCTTGTCTGTGTTGGAATTATGTTGTCTGATTCAATACAGACACGCTATACAGGTCATCGGTGAGTCCGGTTGTCTGCCTCCTGGTCTGCAGCTACTGCCTTTGAAGTAGGTGTGAATGCTTCATCTCTCTggagacacccaccacctccctGACTAGTCTGCCACCTCACTATCAGGACCAGGCAACCAGCCAGAATGGGCAACCAACTAACAGAGATCGCCCCCAACACTGCTTTCCTCCCCAACTTCCAGT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557938.2 False 1507 mRNA 0.50 2 41607918 41610175
TU1340176 True 331 lncRNA 0.50 2 41607957 41609038

Neighbor

gene id symbol gene type direction distance location
LOC110486388 LOC106607193 coding upstream 4798 41594491 ~ 41603120 (+)
LOC110486386 LOC106607191 coding upstream 13028 41581698 ~ 41594890 (+)
shfl LOC106607198 coding upstream 78169 41524871 ~ 41529749 (+)
LOC118938292 NA coding upstream 92921 41514455 ~ 41514997 (+)
LOC110486381 mfap4 coding upstream 98274 41508313 ~ 41509644 (+)
LOC110486391 LOC106601265 coding downstream 74687 41684862 ~ 41709237 (+)
LOC110486392 NA coding downstream 106204 41716379 ~ 41724910 (+)
LOC110486393 rl23 coding downstream 114940 41725115 ~ 41732993 (+)
LOC110486394 LOC106601260 coding downstream 129333 41739508 ~ 41772444 (+)
LOC110486395 ccd56 coding downstream 163281 41773456 ~ 41777013 (+)
G1175219 NA non-coding upstream 1539 41606175 ~ 41606379 (+)
G1175218 NA non-coding upstream 2700 41604999 ~ 41605218 (+)
G1175217 NA non-coding upstream 3295 41604412 ~ 41604623 (+)
G1175206 NA non-coding upstream 46376 41561326 ~ 41561542 (+)
G1175204 NA non-coding upstream 47780 41559917 ~ 41560138 (+)
G1175226 NA non-coding downstream 9707 41619882 ~ 41620120 (+)
G1175238 NA non-coding downstream 32331 41642506 ~ 41642772 (+)
G1175256 NA non-coding downstream 63405 41673580 ~ 41673840 (+)
G1175257 LOC106607189 non-coding downstream 64186 41674361 ~ 41674622 (+)
G1175260 NA non-coding downstream 67807 41677982 ~ 41678186 (+)
G1175164 NA other upstream 67238 41539491 ~ 41540680 (+)
LOC110486375 LOC106601281 other upstream 547981 41055429 ~ 41065432 (+)
G1174245 LOC106607208 other upstream 604894 41001883 ~ 41003024 (+)
G1174211 NA other upstream 701445 40905531 ~ 40906473 (+)
polr3k rpc11 other upstream 1251945 40354342 ~ 40357833 (+)
G1175317 LOC106601258 other downstream 184185 41794360 ~ 41794807 (+)
G1175346 NA other downstream 247014 41857189 ~ 41859343 (+)
G1175667 NA other downstream 316100 41926275 ~ 41926656 (+)
G1176084 LOC106607173 other downstream 678916 42289091 ~ 42291866 (+)

Expression


Co-expression Network