LOC110486395 (ccd56)


Basic Information

Item Value
gene id LOC110486395
gene name ccd56
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41773456 ~ 41777013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557956.2
CACAAACCAAAGAACGTAAAAAAAACGTACGTCACTTCTATCAGACACATAACAACACTGAAATGGCGGCTGAAGGAGTTGGAGAGGTCGCCTCAAAGGAGCAACTTACAGCGGCACAGAAGCAACTTCTCAGGAAAAGACAAGATCTCGACTATTGGAAGAAAAACGCGCTAAAAATACGTAGTCGCAACCGCATAACTGGACTAGCTATCGGGGCGTTTGTCATCGGCATGTTCAGCTACACTATCCTCTCAGTGAAGCAGGAGAGGATCATGGAGGACATTGATAACGAGGCAAAGATCAATTACATCAGAGGCCCCAGGACCGGGACCAACTCTTAGGGATGTTCCCAGCTCCCTCACCTGCACAGGAGCTGAGctcacactggactggactgtcaATCTGCCATAAGCAACTGTGCCCAAAATATACACACTTGTTTTTGAAAGGTGGAGGCTCCCATCAATTTGTTATTTCAATATGCATTGTAGAGATAGATGTAACCATGCACATGCTCTAGACCTGGATACCCTGCAAACTGGTTtctgaatataatataacttATATAATAAGAGGTTGTTTAAGAATATTACATGGTTTGTGTCTTGTGCAACTAATTGGCCTCGTAATATAGGAGAAAGCTTACGTGTTGGGCTATTCCATGATATTCGGATGTTGTTATAGAATGAAATAAAACGTAAAGCTGCAATCAGATGATTAGTGTGTAATAAATGATTCACTTACTTGA
>TU1340269
CTTCTATCAGACACATAACAACACTGAAATGGCGGCTGAAGGAGTTGGAGAGGTCGCCTCAAAGGAGCAACTTACAGCGGCACAGAAGCAACTTCTCAGGAAAAGACAAGATCTCGACTATTGGAAGAAAAACGCGCTAAAAATACGTAGTCGCAACCGCATAACTGGACTAGCTATCGGGGCGTTTGTCATCGGCATGTTCAGCTACACTATCCTCTCAGTGAAGCAGGAGAGGATCATGGAGGACATTGATAACGAGGCAAAGATCAATTACATCAGAGGCCCCAGGACCGGGACCAACTCTTAGGGATGTTCCCAGCTCCCTCACCTGCACAGGAGCTGAGctcacactggactggactgtcaATCTGCCATAAGCAACTGTGCCCAAAATATACACACTTGTTTTTGAAAGGTGGAGGCTCCCATCAATTTGTTATTTCAATATGCATTGTAGAGATAGATGTAACCATGCACATGCTCTAGACCTGGATACCCTGCAAACTGGTTtctgaatataatataacttATATAATAAGAGGTTGTTTAAGAATATTACATGGTTTGTGTCTTGTGCAACTAATTGGCCTCGTAATATAGGAGAAAGCTTACGTGTTGGGCTATTCCATGATATTCGGATGTTGTTATAGAATGAAATAAAACGTAAAGCTGCAATCAGAT

Function

NR:

description
cytochrome c oxidase assembly factor 3 homolog, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557956.2 False 748 mRNA 0.42 2 41773456 41777013
TU1340269 True 681 TUCP 0.43 2 41773490 41776980

Neighbor

gene id symbol gene type direction distance location
LOC110486394 LOC106601260 coding upstream 1012 41739508 ~ 41772444 (+)
LOC110486393 rl23 coding upstream 42397 41725115 ~ 41732993 (+)
LOC110486392 NA coding upstream 48546 41716379 ~ 41724910 (+)
LOC110486391 LOC106601265 coding upstream 64219 41684862 ~ 41709237 (+)
LOC110486389 LOC106607190 coding upstream 163281 41607918 ~ 41610175 (+)
tanc2a LOC106607178 coding downstream 94635 41871648 ~ 42008584 (+)
hdac5 LOC106607176 coding downstream 270377 42047390 ~ 42133078 (+)
LOC110486402 LOC106607175 coding downstream 356616 42133629 ~ 42142203 (+)
LOC110486404 LOC106601293 coding downstream 378161 42155174 ~ 42158198 (+)
LOC110486405 LOC106601250 coding downstream 386175 42163188 ~ 42204767 (+)
G1175289 NA non-coding upstream 35389 41737832 ~ 41738067 (+)
G1175286 NA non-coding upstream 45920 41726932 ~ 41727536 (+)
G1175263 NA non-coding upstream 92148 41680882 ~ 41681308 (+)
G1175260 NA non-coding upstream 95270 41677982 ~ 41678186 (+)
G1175303 LOC108429078 non-coding downstream 3392 41780405 ~ 41780816 (+)
G1175304 LOC106601258 non-coding downstream 4464 41781477 ~ 41782047 (+)
G1175307 NA non-coding downstream 7837 41784850 ~ 41785078 (+)
G1175312 NA non-coding downstream 12041 41789054 ~ 41789271 (+)
G1175314 NA non-coding downstream 13992 41791005 ~ 41791308 (+)
G1175164 NA other upstream 232776 41539491 ~ 41540680 (+)
LOC110486375 LOC106601281 other upstream 713519 41055429 ~ 41065432 (+)
G1174245 LOC106607208 other upstream 770432 41001883 ~ 41003024 (+)
G1174211 NA other upstream 866983 40905531 ~ 40906473 (+)
polr3k rpc11 other upstream 1417483 40354342 ~ 40357833 (+)
G1175317 LOC106601258 other downstream 17347 41794360 ~ 41794807 (+)
G1175346 NA other downstream 80176 41857189 ~ 41859343 (+)
G1175667 NA other downstream 149262 41926275 ~ 41926656 (+)
G1176084 LOC106607173 other downstream 512078 42289091 ~ 42291866 (+)
G1176278 LOC106607164 other downstream 705364 42482377 ~ 42484520 (+)

Expression


Co-expression Network