LOC110487541 (LOC106607111)


Basic Information

Item Value
gene id LOC110487541
gene name LOC106607111
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41862761 ~ 41863809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559455.2
TGCTGGGTCAGGGGTTTGAACAATGGAGCTGGGAATTCTTTAGGTTTGGTCAGGTATAAAAGAAAGGGTTAAACCAGGTAGGAATCAGTTCAGGAGCAGCAACCAGCAGCACAGTGAGCAAACATGTCCACCAGCATGAACATGGGCAGGgTCGTCTTCTACGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGTGCAGCAGCGACTGCGCTGACATGTCCTCCTACCTGAGCAGGTGCCACTCCTGTAGGGTTCAGAGCGGTTGCTTCATGGTCTACGACCGCAACAACTACATGGGAAACCAGTACTTCATGAGGAGGGGAGAGTACTCTGACTTCCAGAGTATGATGGGAATGACTGATATCAGGTCCTGCCGCACAATCCCCATGCACAGAGGATCCTACAGAATGAGGATCTACGAGAGAGATAACTTTGGAGGTCAGATGCACGAGATGATGGACGACTGTGACTCCATCATGGACCGTTATCGCATGTCCGACTGCCAGTCCTGCAACGTGATGGATGGCCACTGGCTGATGTACGAGCAGCCCCACTTCAGAGGCAGGATGATGTACATGAGGCCCGGAGAGTACAGGAACTTCAGGGATATGGGCATGAGTGGCATGAGGTTCATGAGCATGAGGCGTATCACTGATATGTGCTAGATATGTTATGTTGACCAAATAAAAGTGATTGGTAATCCATAACAA

Function

NR:

description
PREDICTED: gamma-crystallin M3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559455.2 True 711 mRNA 0.50 3 41862761 41863809

Neighbor

gene id symbol gene type direction distance location
LOC110486396 LOC106601258 coding downstream 5135 41776509 ~ 41857626 (-)
rl23 rl23 coding downstream 129772 41730039 ~ 41732989 (-)
LOC110486390 LOC106607189 coding downstream 186863 41665511 ~ 41675898 (-)
LOC110487540 NA coding downstream 212328 41648131 ~ 41650433 (-)
LOC110486387 LOC106601269 coding downstream 281184 41573449 ~ 41581577 (-)
LOC110486400 LOC106601255 coding upstream 143837 42007646 ~ 42015906 (-)
LOC110486406 LOC106607173 coding upstream 346413 42210222 ~ 42291977 (-)
LOC118938459 NA coding upstream 486719 42350528 ~ 42357245 (-)
LOC110486410 LOC106607167 coding upstream 531993 42395802 ~ 42424908 (-)
LOC110486411 LOC106607168 coding upstream 562567 42426376 ~ 42435161 (-)
G1175568 NA non-coding downstream 52259 41810143 ~ 41810502 (-)
G1175567 NA non-coding downstream 55288 41807084 ~ 41807473 (-)
G1175564 NA non-coding downstream 62226 41800324 ~ 41800535 (-)
G1175562 NA non-coding downstream 63816 41798745 ~ 41798945 (-)
G1175561 NA non-coding downstream 64047 41798500 ~ 41798714 (-)
G1175807 NA non-coding upstream 7813 41871622 ~ 41872053 (-)
G1175809 NA non-coding upstream 11484 41875293 ~ 41875584 (-)
G1175813 NA non-coding upstream 16388 41880197 ~ 41880428 (-)
G1175814 NA non-coding upstream 16679 41880488 ~ 41880701 (-)
G1175815 NA non-coding upstream 17090 41880899 ~ 41881112 (-)
col5a3a LOC106607203 other downstream 570967 41282052 ~ 41362985 (-)
LOC110486364 LOC106601288 other downstream 1028125 40831402 ~ 40843483 (-)
G1174741 NA other downstream 1405080 40456895 ~ 40457681 (-)
G1174658 NA other downstream 1545902 40316118 ~ 40316859 (-)
G1173645 NA other downstream 1937802 39923922 ~ 39924959 (-)
G1175904 LOC106607178 other upstream 133505 41997314 ~ 41997637 (-)
G1175906 NA other upstream 135543 41999352 ~ 42000091 (-)
G1176164 NA other upstream 464235 42328044 ~ 42328572 (-)
LOC110486413 rbx1 other upstream 589350 42453094 ~ 42456995 (-)
LOC110487542 LOC106607166 other upstream 605893 42469256 ~ 42477053 (-)

Expression


Co-expression Network