LOC110486404 (LOC106601293)


Basic Information

Item Value
gene id LOC110486404
gene name LOC106601293
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42155174 ~ 42158198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941132.1
ttggagtattgtgtgtagattgaagacgtattaaatccattttagaataagactaacgtaacaatgtggagtGGTCCGAATACTTTCCTCAATTCACTGTATATAACTTTTGGACAGTTTGATGGATGCACCATGTAACCTCTGCGTAAATGTGATTTTATACGACGCAATGACATTTGTTCAGAAGAAATTCACGAAAACTACATTGTGTAATATTACAATTGGGGGATTGCAGGGCAGATGTTCCATCGTCAGTTTTTCATATTCGATAAACGAGGGGTCTTCAATTGGTAACTGGGATGTTTATTTTACTCTGGCTAATAAGGGGACGCTGGATACATTTTGGTGAAATGAAAGGGGGGGACTAAGGAGTACTAAAAAAACTCCATTATTAGATGGGAACATCTGTAGGGCAGATGATTTGTGGATTTAATCTCTACGGAAAAAGCGAGAGGGAGCGTGATGAGGACACAGGAGTTAGTTTACTGATGCGGCACCCGCGCTTTTCATCGTTGATTTGATATAAATATTGTAGATATTCCTATCTGGATTCTGATACTCCACTCCAAACGTCCTCAAGCCTTGTCGTGATAAAGCACTTTAGGTGCACATTTTTGCAAGTAATATGTTATTTCCTGCTCTGCTGCTGCTGGCGCTGTCTTCGGTGTTAAGTTCAAAAGAGTGCCCTCACCACTGCCTCTGCTACGAACACTCGGATTTGGTGGACTGCCGAGCGCGCGGGTTCCTCCAAGTGCCCCATGGCCTGTCCCATGGCACCTGGCTGCTGGACCTGGGTGGCAACTTGCTGATGGAAGTGCGGAGCCGTGCCTTTGCCGGACTTTGGTCACTGCGGGTCCTGGTGCTGTCTGACAGTGGAATCCAGCTGCTGCAGCCCGAGgcctTCTACTCCCTCTCCTTTCTGGAGAAGCTGGACATGAGCCGTAACAAACTGCGCCGGCTGCCGTTGGACTTCTCCCACAGTCTGTCCTCGGTCCGGGAGCTCCGGCTGGACCACAACACCCTTGAGTGGCTAGAAGTCTCCAGCCTGGAGCACCTGGAGAGCCTGGAGAAGCTGGACCTCAGCCACAACCACATCACCTTCCTGCAGCCAGGAGCCTTCCGGGGCCTGTCTCGCCTACGCCACCTCTACCTCCATGCCAACCAGCTGCGAGCTGTGCGCCATGGTTCCCTGTCCATGCTGCCCGTCCTGGAGGCCCTGCAGCTGGGCCAGAACAACATCACTCACATCGACACGGAGGCTCTGGCTCCCCTGCACAGTCTCACCCTTCTGGGCCTGGAGGGAAACCAGCTGCAGCACCTTAAGTTCAAGACCTTCCTGAGCCTCCACACGGCCGGCACCCACCTGCAGCTAGCTGGCAACCCGTGGAACTGCGACTGCGACCTGCACCGGGTCTTCAGCAAGCTGCTGAGTGTGCGCCACCTTCACGTTGACGACTACCACAACGTGACGTGCCACGAGCCTCTGCAGCTGGCGGGCGCCTCGCTGGCGTGGGTGGACAATCAGTTGTGCATGGCAGAGACGGCCACCGTGCTGGTCATCACCGTAACGGTGCTGGTGACCGTGTTGGCAGCTGTGGTCATGGCCGAGCACACCCGCAAGAAGAACCAACATGGCGGCAAGAGCTGGGATGCTGAGTCGCAGACCCAGGAGAGGTGACTGTCATGAGGGAGGGACACTGAGTGAGTAATAAGTTCCATAGATGCATTTTCCCTCACCGATCTAGGATCACATTTTACACCATGCTCCCTGGTCATTTTATgtttgaagaagaagaaaaaaagaacagGGCCATTTCCCATCTGCAGCAAACTGACTGTGAGAGTTCATAACACACCTCAGGCTCAGACTGCTCCTTAACATTCAGTTGAACTTGTGGCACTCCTTCTCTCTTCTACTTCATCATGGTCATAACGTATGGCCTATTCTGGTTCCAAGCCTGAGAAACAATATTTTAGAGTATGAGCAGTTTTGTATGATATATCTAGAAGTCTGTGACTTGTGGAACTTGAGGAAGGGACATCATTATTTTTCGGTGTATCATTTAACTACCCGAAGTGTATGACTGCCTACAATTTATCCTGTTAATTTCTTTCTtaaaagtacagtacagtgtttatttttctgttcaacattttctcttcaatgtctattccatttCTGCACACTGTTGAGAACATGGGTATCATGTttcaaatgtaggcctatactCAAAGTACAGTAGTTATTTTTGTCTCATGAATGATTATCTTCTAACACATGCATAGGTTTGATAGTGAATGTATTGTATACAGATGGTAATAAAGTATGACTCTTTTTTTTGACTCTA
>XM_036941133.1
ttggagtattgtgtgtagattgaagacgtattaaatccattttagaataagactaacgtaacaatgtggagtGGTCCGAATACTTTCCTCAATTCACTGTATATAACTTTTGGACAGTTTGATGGATGCACCATGTAACCTCTGCGTAAATGTGATTTTATACGACGCAATGACATTTGTTCAGAAGAAATTCACGAAAACTACATTGTGTAATATTACAATTGGGGGATTGCAGGGCAGATGTTCCATCGTCAGTTTTTCATATTCGATAAACGAGGGGTCTTCAATTGGTAACTGGGATGTTTATTTTACTCTGGCTAATAAGGGGACGCTGGATACATTTTGGTGAAATGAAAGGGGGGGACTAAGGAGTACTAAAAAAACTCCATTATTAGATGGGAACATCTGTAGGGCAGATGATTTGTGGATTTAATCTCTACGGAAAAAGCGAGAGGGAGCGTGATGAGGACACAGGAGTTAGTTTACTGATGCGGCACCCGCGCTTTTCATCGTTGATTTGATATAAATATTATATTCCTATCTGGATTCTGATACTCCACTCCAAACGTCCTCAAGCCTTGTCGTGATAAAGCACTTTAGGTGCACATTTTTGCAAGTAATATGTTATTTCCTGCTCTGCTGCTGCTGGCGCTGTCTTCGGTGTTAAGTTCAAAAGAGTGCCCTCACCACTGCCTCTGCTACGAACACTCGGATTTGGTGGACTGCCGAGCGCGCGGGTTCCTCCAAGTGCCCCATGGCCTGTCCCATGGCACCTGGCTGCTGGACCTGGGTGGCAACTTGCTGATGGAAGTGCGGAGCCGTGCCTTTGCCGGACTTTGGTCACTGCGGGTCCTGGTGCTGTCTGACAGTGGAATCCAGCTGCTGCAGCCCGAGgcctTCTACTCCCTCTCCTTTCTGGAGAAGCTGGACATGAGCCGTAACAAACTGCGCCGGCTGCCGTTGGACTTCTCCCACAGTCTGTCCTCGGTCCGGGAGCTCCGGCTGGACCACAACACCCTTGAGTGGCTAGAAGTCTCCAGCCTGGAGCACCTGGAGAGCCTGGAGAAGCTGGACCTCAGCCACAACCACATCACCTTCCTGCAGCCAGGAGCCTTCCGGGGCCTGTCTCGCCTACGCCACCTCTACCTCCATGCCAACCAGCTGCGAGCTGTGCGCCATGGTTCCCTGTCCATGCTGCCCGTCCTGGAGGCCCTGCAGCTGGGCCAGAACAACATCACTCACATCGACACGGAGGCTCTGGCTCCCCTGCACAGTCTCACCCTTCTGGGCCTGGAGGGAAACCAGCTGCAGCACCTTAAGTTCAAGACCTTCCTGAGCCTCCACACGGCCGGCACCCACCTGCAGCTAGCTGGCAACCCGTGGAACTGCGACTGCGACCTGCACCGGGTCTTCAGCAAGCTGCTGAGTGTGCGCCACCTTCACGTTGACGACTACCACAACGTGACGTGCCACGAGCCTCTGCAGCTGGCGGGCGCCTCGCTGGCGTGGGTGGACAATCAGTTGTGCATGGCAGAGACGGCCACCGTGCTGGTCATCACCGTAACGGTGCTGGTGACCGTGTTGGCAGCTGTGGTCATGGCCGAGCACACCCGCAAGAAGAACCAACATGGCGGCAAGAGCTGGGATGCTGAGTCGCAGACCCAGGAGAGGTGACTGTCATGAGGGAGGGACACTGAGTGAGTAATAAGTTCCATAGATGCATTTTCCCTCACCGATCTAGGATCACATTTTACACCATGCTCCCTGGTCATTTTATgtttgaagaagaagaaaaaaagaacagGGCCATTTCCCATCTGCAGCAAACTGACTGTGAGAGTTCATAACACACCTCAGGCTCAGACTGCTCCTTAACATTCAGTTGAACTTGTGGCACTCCTTCTCTCTTCTACTTCATCATGGTCATAACGTATGGCCTATTCTGGTTCCAAGCCTGAGAAACAATATTTTAGAGTATGAGCAGTTTTGTATGATATATCTAGAAGTCTGTGACTTGTGGAACTTGAGGAAGGGACATCATTATTTTTCGGTGTATCATTTAACTACCCGAAGTGTATGACTGCCTACAATTTATCCTGTTAATTTCTTTCTtaaaagtacagtacagtgtttatttttctgttcaacattttctcttcaatgtctattccatttCTGCACACTGTTGAGAACATGGGTATCATGTttcaaatgtaggcctatactCAAAGTACAGTAGTTATTTTTGTCTCATGAATGATTATCTTCTAACACATGCATAGGTTTGATAGTGAATGTATTGTATACAGATGGTAATAAAGTATGACTCTTTTTTTTGACTCTA

Function

NR:

description
slit homolog 2 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941132.1 False 2348 mRNA 0.49 3 42155174 42158198
XM_036941133.1 True 2344 mRNA 0.49 3 42155174 42158198

Neighbor

gene id symbol gene type direction distance location
LOC110486402 LOC106607175 coding upstream 12971 42133629 ~ 42142203 (+)
hdac5 LOC106607176 coding upstream 22096 42047390 ~ 42133078 (+)
tanc2a LOC106607178 coding upstream 146590 41871648 ~ 42008584 (+)
LOC110486395 ccd56 coding upstream 378161 41773456 ~ 41777013 (+)
LOC110486394 LOC106601260 coding upstream 382730 41739508 ~ 41772444 (+)
LOC110486405 LOC106601250 coding downstream 4990 42163188 ~ 42204767 (+)
LOC110486408 LOC106601246 coding downstream 219096 42377294 ~ 42395739 (+)
LOC110486412 f10a1 coding downstream 277047 42435245 ~ 42442043 (+)
LOC110486415 LOC106607163 coding downstream 335890 42494088 ~ 42508373 (+)
LOC110486416 LOC106601241 coding downstream 365678 42523876 ~ 42528284 (+)
G1175737 NA non-coding upstream 113085 42041817 ~ 42042089 (+)
G1175735 NA non-coding upstream 118914 42036056 ~ 42036260 (+)
G1175732 NA non-coding upstream 124555 42030395 ~ 42030619 (+)
G1175715 NA non-coding upstream 166553 41988380 ~ 41988621 (+)
G1176062 NA non-coding downstream 94809 42253007 ~ 42253213 (+)
G1176070 NA non-coding downstream 108138 42266336 ~ 42266645 (+)
G1176079 NA non-coding downstream 121813 42280011 ~ 42280291 (+)
G1176089 NA non-coding downstream 152090 42310288 ~ 42311729 (+)
G1176175 NA non-coding downstream 183260 42341458 ~ 42341722 (+)
G1175667 NA other upstream 228518 41926275 ~ 41926656 (+)
G1175346 NA other upstream 295831 41857189 ~ 41859343 (+)
G1175317 LOC106601258 other upstream 360367 41794360 ~ 41794807 (+)
G1175164 NA other upstream 614494 41539491 ~ 41540680 (+)
G1176084 LOC106607173 other downstream 130893 42289091 ~ 42291866 (+)
G1176278 LOC106607164 other downstream 324179 42482377 ~ 42484520 (+)
LOC110486430 LOC106601228 other downstream 567804 42725254 ~ 42734581 (+)
LOC110486447 LOC106607129 other downstream 807295 42963102 ~ 42990476 (+)
LOC110485182 LOC106607095 other downstream 1100977 43259175 ~ 43265600 (+)

Expression


Co-expression Network