LOC110486411 (LOC106607168)


Basic Information

Item Value
gene id LOC110486411
gene name LOC106607168
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42426376 ~ 42435161 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557999.2
CAGGGGAGGCTGAAACTTGTCACCTTACAAGCACGGCAGACAGACGCATTTATCGACATGATAGTCACAAATTCCTACATGTTGGCTGTCGTATGAAGAGGTAGTCGTTTTATATAGTTTACGTTTGATGTTTAGTCtgctaaagtatttatattttatgtaatTGTGTATACCGCAATACAATTTAGCGCCACCACTTATGGACATCATGATGATGGGAGTTAACTGTCGCTGATAGTCTGACCGACTTGCAACAATGTTGCCCTCACTTAACATTTTGACCAGATCCACTACCCAATTGGTGTCACACTCAAAGTTTTGGAGTCAATGTCATCTGTGGTGCCCATGCCGGAATGTCTCCGTTATACCAGGAGGGTGGAAACCACGGAAGGTTCCACCAAGATACCTCGGCCAGCTAAGCCCCTTCACTCATCCACACTTCATAAAAAATGGTGAGGTGACCCCTGGCTTAACCCAAACAGAGTTTGATCTCCGTCGGCAAAGACTGGCCTCTCTCATCGAGGTTCAGGCAGATCGGCTGGGACCCACTGCTTCGTCCAACAAACACCTCGTCATTGTCCTGTCCCACCCAATCTGCTACATGACCAATGACATCCCCTACCCCTTCCACCAGAACCAGGACTTCCTCTACCTCACAGGCATCCTTGAACCAGACAGCGCCCTGGTTCTGTGTGGTACTGGCCGCCCGGACCAGGCCATCCTCTTTGTACCCCGCAGGGACCCGGCCAGTGAGCTGTGGGACGGGCCCAGGTCAGGGAAGGATGGGGCGGCAGCGTTGACCGGGGTCGAGAGGGTCCATTGCACAGAAGAGTTGGGACTTGTACTCAAAAGCCTTAAAGGTAGCACTGTGTGGTATGATGGCTCCAAGCCCTGCCACCCTGGGCTCCACCAAACCCATGTTCGGCCTCTGCTGGAAGGGGGCCCCATGGTGCGCTCTCTCAGACCCCTTACACACTCCCTCAGGGTCCTCAAGAGCCCAGCCGAGGTGGCTCTCATGAAGGAGGCTGGTCGCATCACAGCACAGGCATTCAAGAAGACTATGAGTATGTCTCAAGGGGATATTGATGAAGCTCTACTGTATGCTAAGTTTGATTTTGAGTGCCGTGCCCATGGAGCCAATTTCTTGGCCTATCCTCCTGTGGTTGCTGGTGGAAACCGAGCCAATACACTTCATTACATAAACAACAACCAGATTGTCAAGAATGGGGAGATGGTGCTACTTGATggagggtgtgaatacttttgttATGTCAGTGATATTACCCGCACCTGGCCGGTGAACGGAAAGTTCAGCCCTGCCCAGGCAGAGTTGTATGAGGGGGTGTTGGAGGTGCAgaaggcctgtctgtctctgtgctcCCCAGGAGCCAGTCTGGACCACATCTACAGCACCATGTTGGCTCTGCTGGGACGCCAACTCAAACAGCTGGGTATCGTGAAGGGCTCCACCAGTGATGCTGATACACTTAAGGCGGCGCGGCGCTACTGCCCCCACCATGTTGGTCACTACCTGGGCATGGATGTGCACGATACCCCTGAGCTTTCCCGCTCTCAGCCCCTCCAGCCTGGAATGGCAATCACAATAGAGCCAGGGCTGTACATATGTGAGGATGATGACCAGGTTCCAGAGCGATTCCGTGGACTTGGGGTGAGAATAGAGGACGACGTTGTGATTCAAGACGAGATAAACCCCTTGATCCTGTCCTCTGACACACCCAAAACCATTGCTGATGTTGAAAGAGCCTGTGCACAGAGTTAGGGCTGAGAGAGACCAGACATGGGGAGGGTATATACCTTGCTCCCAACTGGAGTGTGACTGTATACACTCCTCAAAATGCTGAGTGTGAGCAAGAGTGAGTGTTCATCCCTCTCGAGTGACTGGTCACATTTCAGTGGGTTCTTCTTCGGTATTGGCGATTGCACAATTTAATGTGCATCCTGCCAGCTACTGTGCGGGATGGAAACAGGGTTTCCCCAAAAAGCGTAACTACCAACAAAAAATGAACAAACTACCAAAAAGAAAATATCAAAACAACTTCACTGTTAAAAAATAAACTGATCtgatccctacacaggctcaggGGGAGCCTGGGAGGGCGGGCTGTCTTCCGGCGCCAATATCCCTTCGAAGTGCTTCAGatgtatactaaacaaaaatataaagtgttggtcccatgtttcatgagctgaaataaaagatccccgaaATGTTC
>XM_036942453.1
CAGGGGAGGCTGAAACTTGTCACCTTACAAGCACGGCAGACAGACGCATTTATCGACATGATAGTCACAAATTCCTACATGTTGGCTGTCGTATGAAGAGGTAGTCGTTTTATATAGTTTACGTTTGATGTTTAGTCtgctaaagtatttatattttatgtaatTGTGTATACCGCAATACAATTTAGCGCCACCACTTATGGACATCATGATGATGGGAGTTAACTGTCGCTGATAGTCTGACCGACTTGCAACAATGTTGCCCTCACTTAACATTTTGACCAGATCCACTACCCAATTGGTGTCACACTCAAAGTTTTGGAGTCAATGTCATCTGTGGTGCCCATGCCGGAATGTCTCCGTTATACCAGGAGGGTGGAAACCACGGAAGGTTCCACCAAGATACCTCGGCCAGCTAAGCCCCTTCACTCATCCACACTTCATAAAAAATGGTGAGGTGACCCCTGGCTTAACCCAAACAGAGTTTGATCTCCGTCGGCAAAGACTGGCCTCTCTCATCGAGGTTCAGGCAGATCGGCTGGGACCCACTGCTTCGTCCAACAAACACCTCGTCATTGTCCTGTCCCACCCAATCTGCTACATGACCAATGACATCCCCTACCCCTTCCACCAGAACCAGGACTTCCTCTACCTCACAGGCATCCTTGAACCAGACAGCGCCCTGGTTCTGTGTGGTACTGGCCGCCCGGACCAGGCCATCCTCTTTGTACCCCGCAGGGACCCGGCCAGTGAGCTGTGGGACGGGCCCAGGTCAGGGAAGGATGGGGCGGCAGCGTTGACCGGGGTCGAGAGGGTCCATTGCACAGAAGAGTTGGGACTTGTACTCAAAAGCCTTAAAGGTAGCACTGTGTGGTATGATGGCTCCAAGCCCTGCCACCCTGGGCTCCACCAAACCCATGTTCGGCCTCTGCTGGAAGGGGGCCCCATGGTGCGCTCTCTCAGACCCCTTACACACTCCCTCAGGGTCCTCAAGAGCCCAGCCGAGGTGGCTCTCATGAAGGAGGCTGGTCGCATCACAGCACAGGTGAGTCACCTCACACACGCCATGAGTGAAGCACTCTCAACTGTTCACATAAACCCTCTGCATCCCCTCTTTCAGGCATTCAAGAAGACTATGAGTATGTCTCAAGGGGATATTGATGAAGCTCTACTGTATGCTAAGTTTGATTTTGAGTGCCGTGCCCATGGAGCCAATTTCTTGGCCTATCCTCCTGTGGTTGCTGGTGGAAACCGAGCCAATACACTTCATTACATAAACAACAACCAGATTGTCAAGAATGGGGAGATGGTGCTACTTGATggagggtgtgaatacttttgttATGTCAGTGATATTACCCGCACCTGGCCGGTGAACGGAAAGTTCAGCCCTGCCCAGGCAGAGTTGTATGAGGGGGTGTTGGAGGTGCAgaaggcctgtctgtctctgtgctcCCCAGGAGCCAGTCTGGACCACATCTACAGCACCATGTTGGCTCTGCTGGGACGCCAACTCAAACAGCTGGGTATCGTGAAGGGCTCCACCAGTGATGCTGATACACTTAAGGCGGCGCGGCGCTACTGCCCCCACCATGTTGGTCACTACCTGGGCATGGATGTGCACGATACCCCTGAGCTTTCCCGCTCTCAGCCCCTCCAGCCTGGAATGGCAATCACAATAGAGCCAGGGCTGTACATATGTGAGGATGATGACCAGGTTCCAGAGCGATTCCGTGGACTTGGGGTGAGAATAGAGGACGACGTTGTGATTCAAGACGAGATAAACCCCTTGATCCTGTCCTCTGACACACCCAAAACCATTGCTGATGTTGAAAGAGCCTGTGCACAGAGTTAGGGCTGAGAGAGACCAGACATGGGGAGGGTATATACCTTGCTCCCAACTGGAGTGTGACTGTATACACTCCTCAAAATGCTGAGTGTGAGCAAGAGTGAGTGTTCATCCCTCTCGAGTGACTGGTCACATTTCAGTGGGTTCTTCTTCGGTATTGGCGATTGCACAATTTAATGTGCATCCTGCCAGCTACTGTGCGGGATGGAAACAGGGTTTCCCCAAAAAGCGTAACTACCAACAAAAAATGAACAAACTACCAAAAAGAAAATATCAAAACAACTTCACTGTTAAAAAATAAACTGATCtgatccctacacaggctcaggGGGAGCCTGGGAGGGCGGGCTGTCTTCCGGCGCCAATATCCCTTCGAAGTGCTTCAGatgtatactaaacaaaaatataaagtgttggtcccatgtttcatgagctgaaataaaagatccccgaaATGTTC

Function

NR:

description
probable Xaa-Pro aminopeptidase 3 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function

KEGG:

id description
K01262 pepP; Xaa-Pro aminopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557999.2 False 2234 mRNA 0.51 10 42426376 42435161
XM_036942453.1 True 2309 mRNA 0.51 9 42426376 42435161

Neighbor

gene id symbol gene type direction distance location
LOC110486410 LOC106607167 coding downstream 1468 42395802 ~ 42424908 (-)
LOC118938459 NA coding downstream 69131 42350528 ~ 42357245 (-)
LOC110486406 LOC106607173 coding downstream 134399 42210222 ~ 42291977 (-)
LOC110486400 LOC106601255 coding downstream 410470 42007646 ~ 42015906 (-)
LOC110487541 LOC106607111 coding downstream 562567 41862761 ~ 41863809 (-)
LOC110486413 rbx1 coding upstream 17933 42453094 ~ 42456995 (-)
LOC110487542 LOC106607166 coding upstream 34095 42469256 ~ 42477053 (-)
LOC110486414 LOC106607164 coding upstream 43863 42479024 ~ 42484604 (-)
LOC110486417 LOC106607161 coding upstream 101272 42536433 ~ 42543540 (-)
LOC110486421 LOC106601236 coding upstream 137638 42572799 ~ 42588640 (-)
G1176714 NA non-coding downstream 9262 42416887 ~ 42417114 (-)
G1176693 NA non-coding downstream 30682 42394786 ~ 42395694 (-)
G1176687 NA non-coding downstream 64045 42362093 ~ 42362331 (-)
G1176678 NA non-coding downstream 71853 42354324 ~ 42354523 (-)
G1176718 NA non-coding upstream 8754 42443915 ~ 42444224 (-)
G1176723 NA non-coding upstream 23353 42458514 ~ 42489788 (-)
G1176750 NA non-coding upstream 56178 42491339 ~ 42491598 (-)
G1176751 NA non-coding upstream 57255 42492416 ~ 42492745 (-)
G1176754 NA non-coding upstream 61236 42496397 ~ 42496837 (-)
G1176164 NA other downstream 97804 42328044 ~ 42328572 (-)
G1175906 NA other downstream 426285 41999352 ~ 42000091 (-)
G1175904 LOC106607178 other downstream 428739 41997314 ~ 41997637 (-)
col5a3a LOC106607203 other downstream 1134582 41282052 ~ 41362985 (-)
LOC110486364 LOC106601288 other downstream 1591740 40831402 ~ 40843483 (-)
G1176749 NA other upstream 55397 42490558 ~ 42491172 (-)
LOC110486438 LOC106601158 other upstream 367283 42801570 ~ 42809120 (-)
G1177025 NA other upstream 569595 43004756 ~ 43007324 (-)

Expression


Co-expression Network