LOC110486434 (LOC106607145)


Basic Information

Item Value
gene id LOC110486434
gene name LOC106607145
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42781521 ~ 42787639 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558036.2
CCGGTAGAAATCTGAAACTGCTTGCACTGTCTGCACAGGTTTGCAATAAACAACTACAGTATGATCGAGAAGGTTCATTAGAAAGTATGATAAccttttttctgtgttttatattcTATGCGCCAGTGCCAGCTGCCATCGTGTCCATCATCCACCCATCACTGTCGGGGAGGTGAGAAGGGGAGCTCTCAAAGTTGTTCCTCGCGAGACACGTTCATGGTAAAGAGAATTCCGGTAGTGATGGCGGCGTCGCCTGACACGGACAGTTTGGAGGCACGTATCAACAAGGCCACAAACCCACTGAACAGAGACACAGATTGGGACAGCATCCAGGCCTTCTGTGACCAGCTCAACAATGATTTGGAGGGACCCCAGCTGGCCACCAGGCTACTGGCTCACAAGATCCAATCACCTCAGGAGTGGGAGGCCATGCAGACACTCGTGGTGCTGGAGACTTGCATGAAGAGCTGTGGGGAAAGGTTCCACAGTGAGGTGGGCAAGTTTCGCTTCCTCAATGAGCTCATCAAAGTGGTCTCTCCAAAGtaCCTCGGCACCCGGGCTCCAGAGCCAGTGAAGAAGAAGGTGTTGGAGCTCATCTATAGTTGGACACTGGGGCTGCCTGACGAGGCAAAGATTGCTGATGCCTACCAGATGCTTAAAAAACAGGGCATTGTCAAACAGGACCCAGTTCTTCCAGCTGACAAACTCCTCCTGCTTCCACCTCCCAGACCAAAAAATGCCATATTTGAGGATGAGGAGAAGTCAAAGACACTGACTCGCCTGTTGAACAGCACTCACCCTGAGGACCTGAAAGCAGCCAACAAACTGATCCAGGAAATGGTGCAGGAGgacCAGAAGCGGGCGGAGAAGTTGTCCAAGCGTGTGAACGCCATCCAGGATGTGAATGAGAGTGTCAGCCTACTGACTCAGCTGCTGGAGGACTATGACCGGACCACCAACCCACAGAGCAATGCAGAGCTCATCCAGGACTTGTACCAGCGCTGTGAGAAGATGAGACCCACATTGTTCAGACTGGCCAGTGATACAGAGGACAATGATGAGGCTCTGGCGGAGATCCTCCAGGCCAACGACAGCCTGACTCAGGTCATCAACCTGTACAGGCAGCAGGTGAAGGGAGAGGTGGTGAACGGGAACAACTCAGCTAATACACAAAGGCTCACAGGAAGTAGTGTGGCGCTACTTGATCTATCAGGATTGGACACGTCACCTCCTTCCTACCCAGAATTCCCCACTCCAACAGACAGCCTAAATGCTCCCTCTCAGGAGATGGGCATCAGTCTTCTTGACGATGAGCTAATGTCACTGGGTTTGAGTGAGGGGACCCACACCTCCAACCCGGCCTCCCAGCCTGAGGACTCTACCGCCTGGGACTCTTTCCAGTCTTCCGACAGTGTGGATATTACTGATATCCCAGCAGCGCCTAGTGTACTACTGAGTCCAGATCGGCTCCCCTACACCCAGCCTCTTTCTACTGGAGCCACGTCTGGAAGCTCAGCCTTAGATGAGTTGGATCTGCTGGGGAAGAAGCTGCTACAGCAGTCCCTACCTCCAGAGGGCCTGCAGGTCAAATGGGACAAGCCTCCGTTCAAACCTACTCTACGAGATCTCCAAAACAAATCTGGAACTAATCCAAGTCCTATCCCGGCCTTCTCCCCTGAGCACCCGGTGGCTCTCCTCGGTGATAGGTTGTTGGACACCTCTCCGGTTCACACAGTCATTCCCCCTATAGAAATGACCCTGACAGATGTTTTTGTGCCACTTGAGTCCATTAAGCCCAGCAGCCTGTTGCCTGTGACGGTGTTTGATAGACACAGTTTGCGGGTGCTCTTCCACTTTGCACGTGACACTCCGCCCTTTCTTGCTGATGTGCTGGTGGTGATCATCTCCATGCTCTCCTCCGCCCCGGTTCCAGTCAGCAACATCCTCTTTCAGCCCTCTGTCCCTGACGTACAGAGCTTCCAGCCTTCAACCCAATCCTCCCACCTGCTGCCATCACACAGGTCCTGCTGCTGGCCAACCCTCACAAGGAGAAGGTGCAGTTGCATTACAAGCTAACCTTCACGCTAGGAGAGGAAGACCATGATGAAAGAGGAGTTGTAGCCCAGTTTCCACCTTCAGACACATGGGGCAATCTGTAACATTCAACAGATTGACAAGATGTGGCATCTCACTCACACTGCAGAAACCTTGCTTTTTAAAAATGCTTCTATTGATTGGCTAAGCACGGTCATCTCAACTGGGTGTTTGCTTTATGATTTAGAGTATTGTCCTCTGTGCAGCTTTACAGAACTTTATTTGTCTGCTTTCAAACGTACCTAGAACTATTGCACAGCAGACCGTGTGTCACAGCTATGTCTTGTTTTTAACAAATAGGTTGTCCTTCATTCATAGAATTTATACTATTTGTTTACTTTCATGCTCCGGGAGACATGCAATGGACCCTTTGGGGAAGGCTCATTTTTTATCTTTGTCTCATTCTTTTTATACAGCTGTAGGCTATCCTGCTGAATTACTGTTGAGGTTGTGTTTACCCCACCATGCTCCCAGGGTTTCTTACTGTGATAATGATAATGCATGGAGAATGGTTTGCCTGATATCCTTGTCATGTAGAATTAGACATTCTAAGTCCTATTTAATCTGCCATTTGTGCCTATTTAAGGTTTGTTTTCACTATCATGTCCATTTGGATGGTTTGTCGGTTTTATCTGTTACTCTTTTGATCCATTGCATATGTCTACTCCTTACTGCTTCATAGATGACCTGTTCCGGGAAGAAATCTGTTTTAAAGAAAGATGAATGTCTGTCAA
>XM_021558035.2
AGAAAACCGGTAGAAATCTGAAACTGCTTGCACTGTCTGCACAGGTTTGCAATAAACAACTACAGTATGATCGAGAAGGTTCATTAGAAAGTATGATAAccttttttctgtgttttatattcTATGCGCCAGTGCCAGCTGCCATCGTGTCCATCATCCACCCATCACTGTCGGGGAGGTGAGAAGGGGAGCTCTCAAAGTTGTTCCTCGCGAGACACGTTCATGGTAAAGAGAATTCCGGTAGTGATGGCGGCGTCGCCTGACACGGACAGTTTGGAGGCACGTATCAACAAGGCCACAAACCCACTGAACAGAGACACAGATTGGGACAGCATCCAGGCCTTCTGTGACCAGCTCAACAATGATTTGGAGGGACCCCAGCTGGCCACCAGGCTACTGGCTCACAAGATCCAATCACCTCAGGAGTGGGAGGCCATGCAGACACTCGTGGTGCTGGAGACTTGCATGAAGAGCTGTGGGGAAAGGTTCCACAGTGAGGTGGGCAAGTTTCGCTTCCTCAATGAGCTCATCAAAGTGGTCTCTCCAAAGtaCCTCGGCACCCGGGCTCCAGAGCCAGTGAAGAAGAAGGTGTTGGAGCTCATCTATAGTTGGACACTGGGGCTGCCTGACGAGGCAAAGATTGCTGATGCCTACCAGATGCTTAAAAAACAGGGCATTGTCAAACAGGACCCAGTTCTTCCAGCTGACAAACTCCTCCTGCTTCCACCTCCCAGACCAAAAAATGCCATATTTGAGGATGAGGAGAAGTCAAAGACACTGACTCGCCTGTTGAACAGCACTCACCCTGAGGACCTGAAAGCAGCCAACAAACTGATCCAGGAAATGGTGCAGGAGgacCAGAAGCGGGCGGAGAAGTTGTCCAAGCGTGTGAACGCCATCCAGGATGTGAATGAGAGTGTCAGCCTACTGACTCAGCTGCTGGAGGACTATGACCGGACCACCAACCCACAGAGCAATGCAGAGCTCATCCAGGACTTGTACCAGCGCTGTGAGAAGATGAGACCCACATTGTTCAGACTGGCCAGTGATACAGAGGACAATGATGAGGCTCTGGCGGAGATCCTCCAGGCCAACGACAGCCTGACTCAGGTCATCAACCTGTACAGGCAGCAGGTGAAGGGAGAGGTGGTGAACGGGAACAACTCAGCTAATACACAAAGGCTCACAGGAAGTAGTGTGGCGCTACTTGATCTATCAGGATTGGACACGTCACCTCCTTCCTACCCAGAATTCCCCACTCCAACAGACAGCCTAAATGCTCCCTCTCAGGAGATGGGCATCAGTCTTCTTGACGATGAGCTAATGTCACTGGGTTTGAGTGAGGGGACCCACACCTCCAACCCGGCCTCCCAGCCTGAGGACTCTACCGCCTGGGACTCTTTCCAGTCTTCCGACAGTGTGGATATTACTGATATCCCAGCAGCGCCTAGTGTACTACTGAGTCCAGATCGGCTCCCCTACACCCAGCCTCTTTCTACTGGAGCCACGTCTGGAAGCTCAGCCTTAGATGAGTTGGATCTGCTGGGGAAGAAGCTGCTACAGCAGTCCCTACCTCCAGAGGGCCTGCAGGTCAAATGGGACAAGCCTCCGTTCAAACCTACTCTACGAGATCTCCAAAACAAATCTGGAACTAATCCAAGTCCTATCCCGGCCTTCTCCCCTGAGCACCCGGTGGCTCTCCTCGGTGATAGGTTGTTGGACACCTCTCCGGTTCACACAGTCATTCCCCCTATAGAAATGACCCTGACAGATGTTTTTGTGCCACTTGAGTCCATTAAGCCCAGCAGCCTGTTGCCTGTGACGGTGTTTGATAGACACAGTTTGCGGGTGCTCTTCCACTTTGCACGTGACACTCCGCCCTTTCTTGCTGATGTGCTGGTGGTGATCATCTCCATGCTCTCCTCCGCCCCGGTTCCAGTCAGCAACATCCTCTTTCAGCCCTCTGTCCCTGACACAATGAGAGTGAAGATACAACCCCCATCAGGTACAGAGCTTCCAGCCTTCAACCCAATCCTCCCACCTGCTGCCATCACACAGGTCCTGCTGCTGGCCAACCCTCACAAGGAGAAGGTGCAGTTGCATTACAAGCTAACCTTCACGCTAGGAGAGGAAGACCATGATGAAAGAGGAGTTGTAGCCCAGTTTCCACCTTCAGACACATGGGGCAATCTGTAACATTCAACAGATTGACAAGATGTGGCATCTCACTCACACTGCAGAAACCTTGCTTTTTAAAAATGCTTCTATTGATTGGCTAAGCACGGTCATCTCAACTGGGTGTTTGCTTTATGATTTAGAGTATTGTCCTCTGTGCAGCTTTACAGAACTTTATTTGTCTGCTTTCAAACGTACCTAGAACTATTGCACAGCAGACCGTGTGTCACAGCTATGTCTTGTTTTTAACAAATAGGTTGTCCTTCATTCATAGAATTTATACTATTTGTTTACTTTCATGCTCCGGGAGACATGCAATGGACCCTTTGGGGAAGGCTCATTTTTTATCTTTGTCTCATTCTTTTTATACAGCTGTAGGCTATCCTGCTGAATTACTGTTGAGGTTGTGTTTACCCCACCATGCTCCCAGGGTTTCTTACTGTGATAATGATAATGCATGGAGAATGGTTTGCCTGATATCCTTGTCATGTAGAATTAGACATTCTAAGTCCTATTTAATCTGCCATTTGTGCCTATTTAAGGTTTGTTTTCACTATCATGTCCATTTGGATGGTTTGTCGGTTTTATCTGTTACTCTTTTGATCCATTGCATATGTCTACTCCTTACTGCTTCATAGATGACCTGTTCCGGGAAGAAATCTGTTTTAAAGAAAGATGAATGTCTGTCAA

Function

NR:

description
ADP-ribosylation factor-binding protein GGA1-like isoform X1

GO: NA

KEGG:

id description
K12404 GGA; ADP-ribosylation factor-binding protein GGA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558036.2 False 2828 mRNA 0.49 17 42781521 42787633
XM_021558035.2 True 2865 mRNA 0.49 17 42781521 42787639

Neighbor

gene id symbol gene type direction distance location
LOC110486427 LOC106607149 coding downstream 115507 42655821 ~ 42666014 (-)
LOC110486424 LOC106607151 coding downstream 127093 42634553 ~ 42654428 (-)
LOC110486423 pick1 coding downstream 150424 42622650 ~ 42631097 (-)
trnar-ccu-48 NA coding downstream 162208 42619241 ~ 42619313 (-)
plbd1 plbl1 coding downstream 164789 42612627 ~ 42616732 (-)
LOC110486438 LOC106601158 coding upstream 13931 42801570 ~ 42809120 (-)
LOC110486437 LOC106607139 coding upstream 45915 42833554 ~ 42855208 (-)
LOC110486439 LOC106601217 coding upstream 79208 42866847 ~ 42869075 (-)
LOC110486441 LOC106607136 coding upstream 83263 42870902 ~ 42880838 (-)
fam234b LOC106607128 coding upstream 206003 42993642 ~ 43003153 (-)
G1176873 NA non-coding downstream 24232 42757065 ~ 42757289 (-)
G1176867 NA non-coding downstream 28699 42752153 ~ 42752822 (-)
G1176866 LOC106607146 non-coding downstream 29428 42748268 ~ 42752093 (-)
G1176849 NA non-coding downstream 80070 42701190 ~ 42701451 (-)
G1176807 NA non-coding downstream 187536 42593532 ~ 42593985 (-)
G1176903 NA non-coding upstream 4862 42792501 ~ 42793303 (-)
G1176881 NA non-coding upstream 8911 42796550 ~ 42811883 (-)
G1176907 NA non-coding upstream 23598 42811237 ~ 42846179 (-)
G1176925 NA non-coding upstream 68072 42855711 ~ 42855982 (-)
G1176927 NA non-coding upstream 70484 42858123 ~ 42858337 (-)
G1176749 NA other downstream 290349 42490558 ~ 42491172 (-)
LOC110487542 LOC106607166 other downstream 309543 42469256 ~ 42477053 (-)
LOC110486413 rbx1 other downstream 324575 42453094 ~ 42456995 (-)
G1176164 NA other downstream 452949 42328044 ~ 42328572 (-)
G1175906 NA other downstream 781430 41999352 ~ 42000091 (-)
G1177025 NA other upstream 217117 43004756 ~ 43007324 (-)
G1177027 NA other upstream 219740 43007379 ~ 43007758 (-)
G1176972 LOC106607127 other upstream 251535 43039174 ~ 43049544 (-)
G1177047 NA other upstream 271791 43059430 ~ 43076353 (-)

Expression


Co-expression Network