LOC110486436 (LOC106601222)


Basic Information

Item Value
gene id LOC110486436
gene name LOC106601222
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42794608 ~ 42797362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558039.2
TATATTATGGTGCAGTTGTTAGTCTATCAATCAAATCGACGCACCACGCAACCGGAAGTCGGTTAAACGGATTATATCTAGCTGTTAACAACAGCGTTTTGAAGTTCGCTATCTTTGTTTTTGAAAACACTCGTTTTTTACCAAACTAAAGTAAGGGAACATGTCCGACAACGAAGGAGATTTTGATGATGGAGACTTTGATGACGCTGAAGAGGATGAGGGATTGGATGACCTGGAAAACGTTGAAGATGAGGACCAAGAGAATGTGAAGATCCTGCCTGCAGGGGAGGGGTCACAGGCTAACCAGAAGAGGATCACAACCCAATACATGACCAAATATGAAAGGGCCAGGGTGCTGGGGACACGTGCCCTGCAGATAGCCATGTGTGCCCCAGTCATGgtggagctggagggagagacagacccTCTGCAAATTGCCATGAAAGAGCTAAAGTGCAGGAAGATCCCCATCATCATCCGGCGGTACCTTCCTGATGGCAGTTATGAAGATTGGGGCTGCGACGAGCTCATCATCACAGACTGAGCCAGACCAAACAGGACTGGCAGAGGCAGGGCCATACCACCTCGCAACCCACTAGGCTGGTGTGAGTGCAAGCTTTTGTTCCAGCAAAGCATTAACACACCTTATTCAACTAATCAGGGTCTATTTAAGACTATGAATAATTGATTAGTCAAATCTTGTGTGGTACTGCgtggctggaacaaaagcctgcatacaTACTGGTCCTTTGCTATAACATCACCTACCCCTGCACTGGGCCAACCAGCTCTACGAGCAACCTGCAGAGTGAAGTCCTAGACTGGGGTGTTAGACTTTTTACATTTTAGGCCTGTGACCTCTCCCACTGTATCGCCATGAAAGCATTGACGCATATACAATCTATGAAGTGAAAGTAGGGCTTCTAAAAGCTATGTACTTTTATTACAGCTGTCATTCACAAGGGAGAACTGTAACTCATGTCTACATTTACATTGTGTTAGGTAAAAATTTAATTGTGTTTATGAATAGTTTTATGACGGGGAAGAGCAGTTGCTGTGGAAGAGCTCTTTCTTTTATTGTTGTGATTAAATTCTTTTGTAAGAAAGTACTTTTGTATAATTTTTCTTACCAACACAATTGGCTTTTTGCATGCATGTGACTTTTTTATAAGATTTAGAGCCAAAAAATATTTGCTTTTTTTTTCCATGCAGAGTTAATTGCAAAACATCTGTAATTAAATATCTGTTACAAATGGTGCAACTCACAAA

Function

NR:

description
PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC2

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001055 RNA polymerase II activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03014 RPB6, POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558039.2 True 1269 mRNA 0.43 5 42794608 42797362

Neighbor

gene id symbol gene type direction distance location
LOC110486433 LOC106607143 coding upstream 437 42787639 ~ 42794171 (+)
LOC110486435 LOC106601225 coding upstream 13366 42762420 ~ 42781242 (+)
LOC110486431 LOC106601226 coding upstream 44259 42735313 ~ 42750349 (+)
LOC110486430 LOC106601228 coding upstream 60027 42725254 ~ 42734581 (+)
LOC110486429 LOC106607147 coding upstream 70232 42700605 ~ 42724376 (+)
LOC110486440 LOC106601218 coding downstream 64748 42862110 ~ 42866316 (+)
LOC110485180 LOC106607135 coding downstream 84594 42881956 ~ 42911227 (+)
LOC110486443 cc134 coding downstream 114554 42911916 ~ 42921879 (+)
LOC110486442 LOC106607134 coding downstream 124658 42922020 ~ 42931979 (+)
srebf2 LOC106607132 coding downstream 135582 42932944 ~ 42948586 (+)
G1176382 NA non-coding upstream 33279 42760920 ~ 42761329 (+)
G1176381 NA non-coding upstream 34304 42760005 ~ 42760304 (+)
G1176380 NA non-coding upstream 35997 42758286 ~ 42758611 (+)
G1176371 NA non-coding upstream 59410 42734999 ~ 42735198 (+)
G1176398 NA non-coding downstream 31074 42828436 ~ 42831752 (+)
G1176408 NA non-coding downstream 59356 42856718 ~ 42857103 (+)
G1176410 NA non-coding downstream 73019 42870381 ~ 42870601 (+)
G1176412 NA non-coding downstream 76823 42874185 ~ 42874468 (+)
nol12 LOC106607131 non-coding downstream 153757 42951079 ~ 42953306 (+)
G1176278 LOC106607164 other upstream 310088 42482377 ~ 42484520 (+)
G1176084 LOC106607173 other upstream 502742 42289091 ~ 42291866 (+)
G1175667 NA other upstream 867952 41926275 ~ 41926656 (+)
G1175346 NA other upstream 935265 41857189 ~ 41859343 (+)
LOC110486447 LOC106607129 other downstream 168131 42963102 ~ 42990476 (+)
LOC110485182 LOC106607095 other downstream 461813 43259175 ~ 43265600 (+)
LOC110486464 mgp other downstream 600387 43397744 ~ 43402308 (+)
LOC110486465 bglap other downstream 608806 43406158 ~ 43407943 (+)
G1177750 NA other downstream 1321516 44118878 ~ 44121922 (+)

Expression


Co-expression Network