LOC110486440 (LOC106601218)


Basic Information

Item Value
gene id LOC110486440
gene name LOC106601218
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42862110 ~ 42866316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558046.2
AGAGGCAATACGGattttgcagaaactggcagCCACGTCACCGCTACAGGTCTGGCCAACTTTCCCAGCCCTTTGCGGAAAGTGCTGCAGAGGAATCCCTATGCAGAATATATATAATGAACGTTTATGAGCATTTATAGTGATTTCCAAAGAACAAGAGGACATAACATTTGGGAACATTGGAGTTATTTGTTTTTGGAGAGTCTCATTTTACATACGTTATTGTTTTGACTTCGCCTGAAGACTACTTGGAGGCCTCATTCTTACAGATTTGTACCAATATTTCGACTCTTTCTTTTTGGAATACCAAAACAGCACTATGAATATCTTCCGTCTAGCCGGTGACGTGTCACATCTCGTTGCTATCATCATTCTATTTATGAAGATACGGAGGTCCAAATCCTGTGCCGGTATTTCTGGGAAGTCTCAGGTGCTTTTTGCATTAGTCTTCACTACAAGATACTTGGACCTGTTCACGAGCGTAATCTCCATCTACAACACAGTTATGAAGGTGGTGTTTCTGGCTTTGGCATATGCTACTGTGTACCTGATCTACATGCGCTTCAGGAGCACCTTCGACTCAGAGAGTGACTCATTCCGTGTTGAGTTCCTGCTTGTGCCTGTGGCTGGGCTTTCCTTCCTGGAAAACTATGCATTTGCCCCCTTGGAGATCCTGTGGACCTTCTCCATCTACCTGGAGTCAGTGGCCATCTTGCCCCAGCTCTTCATGATCACCAAGACCGGCGAGGCAGAGTCCATCACCACCCACTACCTGTTCTTCCTGGGTCTCTACCGAGCCCTGTACCTGGCCAACTGGGTGTGGCGCTACCACACCGAGGGCTTCTTTGACCAGATTGCTGTGGTGTCCGGTGTGGTGCAGACAATTTTCTACTGTGACTTCTTCTACCTTTACGTTACCAGGGTGCTCAGAGGAAGTGGAAAGATGTCCCTGCCCATGCCCATCTAAAGAGAGTCAGTGCTGTTTTAAGCGACAGTTGAGCAGTTCAGTAACTGAAAGCACCTCTGCCCACAAATCATACTTAGTAATGGACTACAGTCTGCAGTGtcacagtaccccctgtatacccTGGGGGGTATATACTGTACCCAGAGGGCAACCGTCGTGTTGTTGGTACCTGGTGTGTTTGTTAGTGTGCTTTTCCCTAGACTAAAATGACCAAAGAACGATTGTCCTATGTTTTTGTGCATGAGTGTGTGGAACTGAATGTTAATGGGAATTGAGTAAATTGAATActgtgggattttttatttttattatacttttttttcaTGGAGGCAGATATTGTCCCGCTTGAATTAGTCCAATGGAGTTTGTGCCTTATTTTTCCTTTTCTAGTAAATGGCATATTTGAATGTCGTATTACATCAGAATGGTGTAAACATTGTATATATGTGAGACATTTGTTCTGCTTTCCTGTCTTTTCACTATTTCTACATATAACAGTGACCAACCTTCAATGCTTACATTGTTTCACCAAGCAGAGTTCATTGGGAGTCTTGTATTTAGGCTGCTATGGGCGATATTTGCCATCCTTGTCAAGCAGAGTTCATTGGGAGTCTTGTATTTAGGCTGCTATGGGTGATATTTGCCATCCTTGTCAAGAGTTGTGCTATGTTCTTCCCTTTATGATAATAAGTCCATGGAGATGCCATACAGAACGCACTGTCATGTATGTAACTCTTATATCCGTTCACTTCTTGACTGAACCAAGGTTCTTCTTAAATACGTTGTATTCTGTACTTTGATTTTTACCAGTCATTTCCATTCCTTTAATATTAATGCATTTCATTAAGCAGAACAAATACACATTTGTGTGATGTCACAGTTCAATCTAAATCTATTTTCTATTTGATGAGTTATTTCTCACTAACTAGAGTTCATTCATATCTCAACATTTATTGACAACATTTTCAGACCAGGATTACAATGGCGAAGGCAGATTAATGCTTCAACAAAATGGAAAGTTACTTACACTAAGTATCTTGGTACTACTAAATTTGTATATGTGTGCCAAACTTTTACAACTGTGGTGCCCATGTTGTAATGATCAACATTTTAATACAAAGAACCTTCATCATTTGTAAATTAGGTCAGTAAAATGTATCTTTACTGGTT
>XR_005035737.1
AGAGGCAATACGGattttgcagaaactggcagCCACGTCACCGCTACAGGTCTGGCCAACTTTCCCAGCCCTTTGCGGAAAGTGCTGCAGAGGAATCCCTATGCAGAATATATATAATGAACGTTTATGAGCATTTATAGTGATTTCCAAAGAACAAGAGGACATAACATTTGGGAACATTGGAGTTATTTGTTTTTGGAGAGTCTCATTTTACATACGTTATTGTTTTGACTTCGCCTGAAGACTACTTGGAGGCCTCATTCTTACAGATTTGTACCAATATTTCGACTCTTTCTTTTTGGAATACCAAAACAGCACTATGAATATCTTCCGTCTAGCCGGTGACGTGTCACATCTCGTTGCTATCATCATTCTATTTATGAAGATACGGAGGTCCAAATCCTGTGCCGGTATTTCTGGGAAGTCTCAGGTGCTTTTTGCATTAGTCTTCACTACAAGATACTTGGACCTGTTCACGAGCGTAATCTCCATCTACAACACAGTTATGAAGGTGGTGTTTCTGGCTTTGGCATATGCTACTGTGTACCTGATCTACATGCGCTTCAGGAGCACCTTCGACTCAGAGAGTGACTCATTCCGTGTTGAGTTCCTGCTTGTGCCTGTGGCTGGGCTTTCCTTCCTGGAAAACTATGCATTTGCCCCCTTGGAGGTAAATGTGTCAGGTTCAATACATACtgaacatacagATCCTGTGGACCTTCTCCATCTACCTGGAGTCAGTGGCCATCTTGCCCCAGCTCTTCATGATCACCAAGACCGGCGAGGCAGAGTCCATCACCACCCACTACCTGTTCTTCCTGGGTCTCTACCGAGCCCTGTACCTGGCCAACTGGGTGTGGCGCTACCACACCGAGGGCTTCTTTGACCAGATTGCTGTGGTGTCCGGTGTGGTGCAGACAATTTTCTACTGTGACTTCTTCTACCTTTACGTTACCAGGGTGCTCAGAGGAAGTGGAAAGATGTCCCTGCCCATGCCCATCTAAAGAGAGTCAGTGCTGTTTTAAGCGACAGTTGAGCAGTTCAGTAACTGAAAGCACCTCTGCCCACAAATCATACTTAGTAATGGACTACAGTCTGCAGTGtcacagtaccccctgtatacccTGGGGGGTATATACTGTACCCAGAGGGCAACCGTCGTGTTGTTGGTACCTGGTGTGTTTGTTAGTGTGCTTTTCCCTAGACTAAAATGACCAAAGAACGATTGTCCTATGTTTTTGTGCATGAGTGTGTGGAACTGAATGTTAATGGGAATTGAGTAAATTGAATActgtgggattttttatttttattatacttttttttcaTGGAGGCAGATATTGTCCCGCTTGAATTAGTCCAATGGAGTTTGTGCCTTATTTTTCCTTTTCTAGTAAATGGCATATTTGAATGTCGTATTACATCAGAATGGTGTAAACATTGTATATATGTGAGACATTTGTTCTGCTTTCCTGTCTTTTCACTATTTCTACATATAACAGTGACCAACCTTCAATGCTTACATTGTTTCACCAAGCAGAGTTCATTGGGAGTCTTGTATTTAGGCTGCTATGGGCGATATTTGCCATCCTTGTCAAGCAGAGTTCATTGGGAGTCTTGTATTTAGGCTGCTATGGGTGATATTTGCCATCCTTGTCAAGAGTTGTGCTATGTTCTTCCCTTTATGATAATAAGTCCATGGAGATGCCATACAGAACGCACTGTCATGTATGTAACTCTTATATCCGTTCACTTCTTGACTGAACCAAGGTTCTTCTTAAATACGTTGTATTCTGTACTTTGATTTTTACCAGTCATTTCCATTCCTTTAATATTAATGCATTTCATTAAGCAGAACAAATACACATTTGTGTGATGTCACAGTTCAATCTAAATCTATTTTCTATTTGATGAGTTATTTCTCACTAACTAGAGTTCATTCATATCTCAACATTTATTGACAACATTTTCAGACCAGGATTACAATGGCGAAGGCAGATTAATGCTTCAACAAAATGGAAAGTTACTTACACTAAGTATCTTGGTACTACTAAATTTGTATATGTGTGCCAAACTTTTACAACTGTGGTGCCCATGTTGTAATGATCAACATTTTAATACAAAGAACCTTCATCATTTGTAAATTAGGTCAGTAAAATGTATCTTTACTGGTT

Function

NR:

description
hypothetical protein cypCar_00025168

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558046.2 False 2137 mRNA 0.41 5 42862110 42866316
XR_005035737.1 True 2174 mRNA 0.41 5 42862110 42866316

Neighbor

gene id symbol gene type direction distance location
LOC110486436 LOC106601222 coding upstream 64748 42794608 ~ 42797362 (+)
LOC110486433 LOC106607143 coding upstream 67939 42787639 ~ 42794171 (+)
LOC110486435 LOC106601225 coding upstream 80868 42762420 ~ 42781242 (+)
LOC110486431 LOC106601226 coding upstream 111761 42735313 ~ 42750349 (+)
LOC110486430 LOC106601228 coding upstream 127529 42725254 ~ 42734581 (+)
LOC110485180 LOC106607135 coding downstream 15640 42881956 ~ 42911227 (+)
LOC110486443 cc134 coding downstream 45600 42911916 ~ 42921879 (+)
LOC110486442 LOC106607134 coding downstream 55704 42922020 ~ 42931979 (+)
srebf2 LOC106607132 coding downstream 66628 42932944 ~ 42948586 (+)
nol12 LOC106607131 coding downstream 84763 42951079 ~ 42953306 (+)
G1176408 NA non-coding upstream 5007 42856718 ~ 42857103 (+)
G1176398 NA non-coding upstream 30358 42828436 ~ 42831752 (+)
G1176382 NA non-coding upstream 100781 42760920 ~ 42761329 (+)
G1176381 NA non-coding upstream 101806 42760005 ~ 42760304 (+)
G1176380 NA non-coding upstream 103499 42758286 ~ 42758611 (+)
G1176410 NA non-coding downstream 4065 42870381 ~ 42870601 (+)
G1176412 NA non-coding downstream 7869 42874185 ~ 42874468 (+)
G1176458 NA non-coding downstream 95172 42961488 ~ 42961727 (+)
G1176459 NA non-coding downstream 98017 42964333 ~ 42964538 (+)
G1176278 LOC106607164 other upstream 377590 42482377 ~ 42484520 (+)
G1176084 LOC106607173 other upstream 570244 42289091 ~ 42291866 (+)
G1175667 NA other upstream 935454 41926275 ~ 41926656 (+)
G1175346 NA other upstream 1002767 41857189 ~ 41859343 (+)
LOC110486447 LOC106607129 other downstream 99177 42963102 ~ 42990476 (+)
LOC110485182 LOC106607095 other downstream 392859 43259175 ~ 43265600 (+)
LOC110486464 mgp other downstream 531433 43397744 ~ 43402308 (+)
LOC110486465 bglap other downstream 539852 43406158 ~ 43407943 (+)
G1177750 NA other downstream 1252562 44118878 ~ 44121922 (+)

Expression


Co-expression Network