LOC110486443 (cc134)


Basic Information

Item Value
gene id LOC110486443
gene name cc134
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42911916 ~ 42921879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558049.2
GGAGGGATTTACCGCGTACAACGGCCTGTGTGCCGCTCTAAAATTTCCGTCTGGAAACGACCTCCTTCCATGTAATCGCTGGCTGTCATTCGTCCAAGTAGAGCCAGCCGGTGCGATCGTGGCAGTGGCGGAGTGGAGCAAGCGACTTCTGTATGTAAATTAACATTTCAAACGTGATATTGTTACCTGAGTATTGTAGCAAATACTCCGAAACTGATGTCTCCATCTTTACGAGGAAACTGATGCTAGCGAGAAAGAATCGTTGGTTTCGCTATCGTTTTATATCGTGCTGTTTCTTACTACGAGAGTGCCTCACCATCGCCACCTCTTGACCATGCTGAGTGTGTGTACCGTCGTCCTGGTGGTTGCTGCTGCAGCCCTCTCCTCTGCAGACtccgacacacacagacatgactcCAACCTGGAGATCTaCAAGCGTCTGTTTGAGACTAAGAGGAAAGACCAGCTAAATGCTCTGAAGAACCTGGTGGAGCTCAATGACATCAACCAGCAGTATAAGATCATAGACATCATGCTGAAGGGCTTGTTTAAGGTGTTGGAGGACTCGAAGGCTGTCCTTACTGCAGCCAACATGCAGGCTGATGATCCCTTCCCCATGGATGACAAAATCAAAGAAGCCTACTCCCATGTGGTGGAGAACACGGCGTTCTTTGGGGACGTGGCGTTGCGTTTCCCACGTATTGTCCACCACTACTACGACCGTAACCCAGACTGGGGCGGCCTTCTGCGATGGGGCCTCCGCTTCTGCAACCTCACTGGGGTGTTCACCGGGGGGGCACACCAGCATGTTCTCTCACTGaTGTCGCAGGAGTTGGGAATAATAGAGAAATCCCCAGACTTCACCAACCCATACCGCACTGAGAGAGACGACGTGCTTCACACTGCAGAGGCTTTTCAGAAGAtcctgagggaggaggagaagaggaggaggaaagaggacaaGAGGAAAGAGATTAGGAAGGGGCCCCGCATCTCCCGCTCCCGTACTGAGCTATAGTACTTTACCTCAACTCTTGGAGAGAAATGATGAGGAGAAGGAAAATGTAGGGGGATGTCCTGAGTCCTAGATTCAGTGATGAAGAGGTTGGGTGTTGGAACCGGTGAGTTCTGTCAAAGGGATACAGTGGCAACAGAAAATTTGAGAGGGAACTAGAAGTGTTTATGTGGCACAGGAACAAactggagagaaggaaaggaggttGAGCTCTATCTGTGGAATCCGACTTACTGTATACAGAACTGTGCCCAATCTGCAGTTATTATGAAACAAAGAACATACAGCTAGCACTATGTTGAAGATTTAATAAGGAAAGCTCATTTTCATAACTAGATTACATAACTGTACTTTGGAAGAAACAGCAAATACCCAGTATGTTATCTTTTTTTGTGAATAGATTGAATACAATTTACTACCATACAATTGTTTTGATGATGGCATTTGTACGTTTGAGTTTACATTCTCATTCAACAAGCTTCAAAATATAAAGCTTGAATATGTTGAATTCTGTTTTGGGTTTAAGTTTTAGAGTTAGCAGATTTATATAATGAGATTTTATGAGTTTGTTGTTGAATGGTCCTACTGTAGGTGTATCCTCTTAATTTGCGGTACAAGTGTTGATCTTGAGCGCAGAACCATTTTTCATGATGTCTGCCACTTGCTTTCCTAGAGCCGAATGCTTTCTTAGCTCTGTGTTTGACTGTCCGCATGAGTGTTAAATGGGGTTTGGTCACTTTTATGATTTAAATGAAACTATTTGACATATTATTTTGTCTACAATTAGGGAGGGATAATGTCTTAGCTGTGTCTTTTGACAACCACTCATCAGCTTAAACTTCTATATCATGTCATATTTGTTTCTGTCCATCTGATGGCCATAATGAAATGTCAGAACAGCAGTCACCTAGAACAATGCCATTAAAAAACATCTATATTTTGGCATATCTAGGGAAGATCTTAATTCCATATTTGTCCTGTCTCCTCAAAATCCAATCAACCAGAAATCCCTCCTCTCTGACTACCTCCTATGGGTTTTGAGGAGGAGAGCAGATGCGAGGAGtttgcaattgagatattccccTAGTGTTTTGTTGCCTCGTGACATTTTGAGGGAAATTGGCTCATTTTAATGTAAGTAAGTTATATTCAATATACAGAGGTGATGACTGATTGATTATGATTTGCTAGAGTTTTgtaaatggactgttatttatgTATGTTCAGAGCAGTgcaggctggtgggaggagctaaagGAGGATGGGTTCATtttaatggatggaatggagtttATGGAGCTGAGTTCACAGGTTtgttttattccattccagccattacaatgagtatgtcctcctatagctcatcccaccagcctcctctggttcaGATTAAGCGTCTCATTACTGAGAATTTACTATCGTGAGTAGATTTATCATACATTTGTTAAGTTTAATAAAACATAAATTACTATGAA
>XM_021558050.2
CGTACAACGGCCTGTGTGCCGCTCTAAAATTTCCGTCTGGAAACGACCTCCTTCCATGTAATCGCTGGCTGTCATTCGTCCAAGTAGAGCCAGCCGGTGCGATCGTGGCAGTGGCGGAGTGGAGCAAGCGACTTCTAGTGCCTCACCATCGCCACCTCTTGACCATGCTGAGTGTGTGTACCGTCGTCCTGGTGGTTGCTGCTGCAGCCCTCTCCTCTGCAGACtccgacacacacagacatgactcCAACCTGGAGATCTaCAAGCGTCTGTTTGAGACTAAGAGGAAAGACCAGCTAAATGCTCTGAAGAACCTGGTGGAGCTCAATGACATCAACCAGCAGTATAAGATCATAGACATCATGCTGAAGGGCTTGTTTAAGGTGTTGGAGGACTCGAAGGCTGTCCTTACTGCAGCCAACATGCAGGCTGATGATCCCTTCCCCATGGATGACAAAATCAAAGAAGCCTACTCCCATGTGGTGGAGAACACGGCGTTCTTTGGGGACGTGGCGTTGCGTTTCCCACGTATTGTCCACCACTACTACGACCGTAACCCAGACTGGGGCGGCCTTCTGCGATGGGGCCTCCGCTTCTGCAACCTCACTGGGGTGTTCACCGGGGGGGCACACCAGCATGTTCTCTCACTGaTGTCGCAGGAGTTGGGAATAATAGAGAAATCCCCAGACTTCACCAACCCATACCGCACTGAGAGAGACGACGTGCTTCACACTGCAGAGGCTTTTCAGAAGAtcctgagggaggaggagaagaggaggaggaaagaggacaaGAGGAAAGAGATTAGGAAGGGGCCCCGCATCTCCCGCTCCCGTACTGAGCTATAGTACTTTACCTCAACTCTTGGAGAGAAATGATGAGGAGAAGGAAAATGTAGGGGGATGTCCTGAGTCCTAGATTCAGTGATGAAGAGGTTGGGTGTTGGAACCGGTGAGTTCTGTCAAAGGGATACAGTGGCAACAGAAAATTTGAGAGGGAACTAGAAGTGTTTATGTGGCACAGGAACAAactggagagaaggaaaggaggttGAGCTCTATCTGTGGAATCCGACTTACTGTATACAGAACTGTGCCCAATCTGCAGTTATTATGAAACAAAGAACATACAGCTAGCACTATGTTGAAGATTTAATAAGGAAAGCTCATTTTCATAACTAGATTACATAACTGTACTTTGGAAGAAACAGCAAATACCCAGTATGTTATCTTTTTTTGTGAATAGATTGAATACAATTTACTACCATACAATTGTTTTGATGATGGCATTTGTACGTTTGAGTTTACATTCTCATTCAACAAGCTTCAAAATATAAAGCTTGAATATGTTGAATTCTGTTTTGGGTTTAAGTTTTAGAGTTAGCAGATTTATATAATGAGATTTTATGAGTTTGTTGTTGAATGGTCCTACTGTAGGTGTATCCTCTTAATTTGCGGTACAAGTGTTGATCTTGAGCGCAGAACCATTTTTCATGATGTCTGCCACTTGCTTTCCTAGAGCCGAATGCTTTCTTAGCTCTGTGTTTGACTGTCCGCATGAGTGTTAAATGGGGTTTGGTCACTTTTATGATTTAAATGAAACTATTTGACATATTATTTTGTCTACAATTAGGGAGGGATAATGTCTTAGCTGTGTCTTTTGACAACCACTCATCAGCTTAAACTTCTATATCATGTCATATTTGTTTCTGTCCATCTGATGGCCATAATGAAATGTCAGAACAGCAGTCACCTAGAACAATGCCATTAAAAAACATCTATATTTTGGCATATCTAGGGAAGATCTTAATTCCATATTTGTCCTGTCTCCTCAAAATCCAATCAACCAGAAATCCCTCCTCTCTGACTACCTCCTATGGGTTTTGAGGAGGAGAGCAGATGCGAGGAGtttgcaattgagatattccccTAGTGTTTTGTTGCCTCGTGACATTTTGAGGGAAATTGGCTCATTTTAATGTAAGTAAGTTATATTCAATATACAGAGGTGATGACTGATTGATTATGATTTGCTAGAGTTTTgtaaatggactgttatttatgTATGTTCAGAGCAGTgcaggctggtgggaggagctaaagGAGGATGGGTTCATtttaatggatggaatggagtttATGGAGCTGAGTTCACAGGTTtgttttattccattccagccattacaatgagtatgtcctcctatagctcatcccaccagcctcctctggttcaGATTAAGCGTCTCATTACTGAGAATTTACTATCGTGAGTAGATTTATCATACATTTGTTAAGTTTAATAAAACATAAATTACTATGAA

Function

NR:

description
coiled-coil domain-containing protein 134-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558049.2 False 2490 mRNA 0.43 7 42911916 42921879
XM_021558050.2 True 2320 mRNA 0.43 7 42911930 42921879

Neighbor

gene id symbol gene type direction distance location
LOC110485180 LOC106607135 coding upstream 689 42881956 ~ 42911227 (+)
LOC110486440 LOC106601218 coding upstream 45600 42862110 ~ 42866316 (+)
LOC110486436 LOC106601222 coding upstream 114554 42794608 ~ 42797362 (+)
LOC110486433 LOC106607143 coding upstream 117745 42787639 ~ 42794171 (+)
LOC110486435 LOC106601225 coding upstream 130674 42762420 ~ 42781242 (+)
LOC110486442 LOC106607134 coding downstream 141 42922020 ~ 42931979 (+)
srebf2 LOC106607132 coding downstream 11065 42932944 ~ 42948586 (+)
nol12 LOC106607131 coding downstream 29200 42951079 ~ 42953306 (+)
LOC110486447 LOC106607129 coding downstream 41223 42963102 ~ 42990476 (+)
ndufa6 ndua6 coding downstream 68822 42990701 ~ 42993308 (+)
G1176412 NA non-coding upstream 37448 42874185 ~ 42874468 (+)
G1176410 NA non-coding upstream 41315 42870381 ~ 42870601 (+)
G1176408 NA non-coding upstream 54813 42856718 ~ 42857103 (+)
G1176398 NA non-coding upstream 80164 42828436 ~ 42831752 (+)
G1176382 NA non-coding upstream 150587 42760920 ~ 42761329 (+)
G1176458 NA non-coding downstream 39609 42961488 ~ 42961727 (+)
G1176459 NA non-coding downstream 42454 42964333 ~ 42964538 (+)
G1176460 NA non-coding downstream 42924 42964803 ~ 42965047 (+)
G1176475 NA non-coding downstream 87436 43009315 ~ 43009626 (+)
LOC110486430 LOC106601228 other upstream 181805 42725254 ~ 42734581 (+)
G1176278 LOC106607164 other upstream 427396 42482377 ~ 42484520 (+)
G1176084 LOC106607173 other upstream 620050 42289091 ~ 42291866 (+)
G1175667 NA other upstream 985260 41926275 ~ 41926656 (+)
G1175346 NA other upstream 1052573 41857189 ~ 41859343 (+)
LOC110485182 LOC106607095 other downstream 337296 43259175 ~ 43265600 (+)
LOC110486464 mgp other downstream 475870 43397744 ~ 43402308 (+)
LOC110486465 bglap other downstream 484289 43406158 ~ 43407943 (+)
G1177750 NA other downstream 1196999 44118878 ~ 44121922 (+)

Expression


Co-expression Network