LOC110486442 (LOC106607134)


Basic Information

Item Value
gene id LOC110486442
gene name LOC106607134
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42922020 ~ 42931979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558048.2
TTCCCCCCCACTGTTTTTGGTTAAACTCATTGGACTGTTGCCGAACAGAGTCATCTCCGCCGTAAACACTTCACCAACGCAACAAGCCCGAATGGAGACTTGAAGCTTAATCAGACAGAGGTCATGTCTAATTTCGTGGAATTGGgaaggagaagaggggagggaaaaGACCCAGATGAATTTTCAGAGAGCGAGGAGGATGTCTCCTTAGCCACAGAGCTCCGTCTTGTCCTGATCGGAAAGACAGGATCAGGGAAGAGTGCCTCTGGGAACACCATCCTGGGCCGCAGGCACTTCCTGTCAGAGCTCAGCGCCAGCTCAGTCACCCAAGTCTGTGAACAAGGCAGCGCAGACCTgactgaggaggaggaaggacaaGGAGTCAGGAGGAAGAGGACGaaagtggtggtggtagacatgCCGGGTTTTGGAGACACACGCTTCGATGCTGAGCAGACTCATTCTGAAATAGCCAAGTGTGTGGCACTGTCTGCCCCAGGCCCCCATGCATTCCTCCTGGTGATCCCACTGGGTCGCTACACTGAGGATGAGGACCGAGCCGTGAGGGACATGGTCCATATATTTGGGGAGGGTGCGATCCATGACCACACACTAGTCCTGTTCACTCGTGGTGATGATCTagaagggagggggatggaggggtaCCTCGGAGCCAGCGCCCCGGTGGAGCTGAAGGCCTTGATAGAGAGGTGTGGGGGCAGGTACCACGTCCTCAACAACAGAGACCCAAGTGACCTGCACCAGGTTGTAGGGCTGCTGGAGAAGGTGGAGAGGATTGTGGAAGAGAACAATGGAGGCTTCTACACCAACACCATGTTCAGAGAGGCTGAGGCTGCCATcagggaggagcaggagaggatggtgagagagagaggggagggagaaggcaGTGATATGACGGACAGGGAGAACAAGATAGCTAAAAGGCGGAAGTGTGATCTAGAACAGAGTGAGAGTGggtgggatgagaggaggggggcaGCTGTGGGAGTTTCAGAATTAAGGAAGAGAGACCTGGAGAGAGTAAatgaggagggaaggaaggtggagaggtggacagaagagaggaaaggaagtgCTGTTAGCCTCCCGAGGGACAGAGGGGACAGGTGGAGGCAGCTGTTCAGGACCAGGCGGCGGGGCAGCGACAGGACCTTGAGCAGGAGGCAGTCTTTCCTCTCTGCCCTGGGGCAGTTCAGGAGGGAGGCCGCCCTTTCTGAGAAGGTCCTAGAGAGAGTGAAGATCCTGGTGGCTGCTGGAGCCACTGGCATGGTCGTGGGGGCAGTGTTCGGGGCGGCTGCCCCTCTAGCTGCAGCGGCGGGAGCTGCAGCCATGGGGAACACTGTGGGCTTTGCTGCTGGGCAGCTGGCTGGGATGTCGGTGGCAGGCGGCACAGGGATGGGAAAAGCTGTGGGCGCCATAGTGGCAGCAGCCGCAGGGAAAACAGCCATGGCTCTCGGGGCAGCGACCGGAGGAGTGCTGGGGGGATCTGTGGGCGCCCTAGCTGGGGCAGAAGCTGCCAGTCCTGGGGCAGCTGCCTTGGATGCTCTAGGGCAGGTGAGCCTGATTGGGACTGCAGCAGTGGGAGTTGCAGCAGGGGTGGGAGGTGCCATGGGGGCAGGAGCGGCCCTGGGGGCTGCTCTGGAAGGTGTAGCTGTCAGCACAACTGCCCTGACAGGGGTGAGCACCGCAGCAGGGGCAGTAGGTGTGGCTAATGCTACTACAGTAGCAGCTGGGCAGCAAGCAGTGGCCACTGGGGGCAGTGTTGCAGCTGGAGCAGTTCAGTGTGCTGCCGCCGCTGTGGCAGATGGGGTGGCTGTGAGTGGGCCAATGGTTCAGGCTGGTGGGGTGTGTAGATCTGCAGGGCAGGTTGTTTCTGGTGCCTGGGGCTCCATGGGAGCGACAGCGTGCATTATGACAGCGGTGGCAGAGATAGGCAAGGCTGCAGCGGGAATTGCCCTGGCAGGAGGGCTGGTGGTGAAGGTAGTGAAGGAGAGGGTCAGGAACAGCAACAGCTCAGCAGACGCCAACTACACAGAAAAGAAGTCCTACGAGATCTACTGGAACAAATAAAGGACAGTTAGGCCTGCAACACTACCAGACCACAGAAGGAAAAGACACTCTCAGGACCTTTCAAAATGTGGATTCAGGTTCAATCATTAAGCAACTTATCACAATTATCAATAAAAGCACATGTTGCAAGTCTTTGTTCTTTTTACTGGCTGTGGATGGTGTGATTTCCTCTATTCCCTGTGAATAAACTATAGCTCTTCTGCAGTGAAGTGTCTTCCCACAATATTACTGAACTATCGTTTTAGCTTTGTTCAAGCACTTACTGTGGTTATTTGAGCTTTTTGGTATGTACTTACACCATTTGTGTGATTACTTGTGATCCCATAgttatttttaattaattatagGATATGGTTTTCTACTGTATTCAGTCAAATTAGTCGTTTACTGTTTTAATGAAAGACATGCAGATTTTCAGAAATCCACAGATATAATCTACGACTAAAGTCGGGTCCAGTATTACAAAACATTATTTTTAGCTCTTATTCACAACTGAaatgatgtactgtactgtataacaCACATTTCACATTGTGTTCAGTTGCAGTGTTGTGGATTTTTGAAGGGGAAAGAATTGAAATGCATAATAAAATTAAATCTGATAAAT

Function

NR:

description
uncharacterized protein LOC110486442

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558048.2 True 2701 mRNA 0.53 2 42922020 42931979

Neighbor

gene id symbol gene type direction distance location
LOC110486443 cc134 coding upstream 141 42911916 ~ 42921879 (+)
LOC110485180 LOC106607135 coding upstream 10793 42881956 ~ 42911227 (+)
LOC110486440 LOC106601218 coding upstream 55704 42862110 ~ 42866316 (+)
LOC110486436 LOC106601222 coding upstream 124658 42794608 ~ 42797362 (+)
LOC110486433 LOC106607143 coding upstream 127849 42787639 ~ 42794171 (+)
srebf2 LOC106607132 coding downstream 965 42932944 ~ 42948586 (+)
nol12 LOC106607131 coding downstream 19100 42951079 ~ 42953306 (+)
LOC110486447 LOC106607129 coding downstream 31123 42963102 ~ 42990476 (+)
ndufa6 ndua6 coding downstream 58722 42990701 ~ 42993308 (+)
LOC118938458 NA coding downstream 68731 43000710 ~ 43001284 (+)
G1176412 NA non-coding upstream 47552 42874185 ~ 42874468 (+)
G1176410 NA non-coding upstream 51419 42870381 ~ 42870601 (+)
G1176408 NA non-coding upstream 64917 42856718 ~ 42857103 (+)
G1176398 NA non-coding upstream 90268 42828436 ~ 42831752 (+)
G1176382 NA non-coding upstream 160691 42760920 ~ 42761329 (+)
G1176458 NA non-coding downstream 29509 42961488 ~ 42961727 (+)
G1176459 NA non-coding downstream 32354 42964333 ~ 42964538 (+)
G1176460 NA non-coding downstream 32824 42964803 ~ 42965047 (+)
G1176475 NA non-coding downstream 77336 43009315 ~ 43009626 (+)
LOC110486430 LOC106601228 other upstream 191909 42725254 ~ 42734581 (+)
G1176278 LOC106607164 other upstream 437500 42482377 ~ 42484520 (+)
G1176084 LOC106607173 other upstream 630154 42289091 ~ 42291866 (+)
G1175667 NA other upstream 995364 41926275 ~ 41926656 (+)
G1175346 NA other upstream 1062677 41857189 ~ 41859343 (+)
LOC110485182 LOC106607095 other downstream 327196 43259175 ~ 43265600 (+)
LOC110486464 mgp other downstream 465770 43397744 ~ 43402308 (+)
LOC110486465 bglap other downstream 474189 43406158 ~ 43407943 (+)
G1177750 NA other downstream 1186899 44118878 ~ 44121922 (+)

Expression


Co-expression Network