LOC110486450 (LOC100380702)


Basic Information

Item Value
gene id LOC110486450
gene name LOC100380702
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43011969 ~ 43017789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558065.2
GTCCCTAAGGCTGtgaaatTTACGATCACTCACGCCTTTGAGTCAAAGAAGATGGAAGATATTTCTTTGGACGAAGTGATACGTCGACGCGGTTTCAACAACAAAGAAACAATTAAAAGGCCTATGTTCGGCAGGGGTGCTGGAGGGGTCGGGAGGACCTTTGATGCCCGACAGAAAATTGGGATGACAGATGTCAGACAGAGacttggtggaggaggaggaactgCTTTTCAAGTGAAGGATGCAAGAGAGAAACTTGGCCAGAAAGATGCCCGCTTCCGAATCCGAGGAGGAGCAGGTGGGGTCCAGGATGCCCGACAGATGATCAACTCACGGAAAGGAGGTCCGAATACATTTAATGTTACCCCACAGAGTTTACAGCAGATACCAGCAGCACAGCTACAGACACATGTGCAGCAGATACAGATACACACTTCCAACGACATTGCCAGTGCAAATGCCAGGCAGTTTACCCCCAACCTACAAGGAATGAACATTAGAGCTGGGGTTACGCCACAGCTGGGGGGTGCACCTAAGAGGATGATGGATGCTCGTGATAGGCTGAGCCTCAAGAGGACCATTGGAGCTCCACCAAGCCAAGGAATGGTGACACCCATGAAGATCACCAAAACCATCCAGcagCAAAGGCCGGTAGGGATGTCAAGTGGGATCCGTATGAAAATGCCAAGCAGGGGTTCCCAGTCTTTCTCAGGTGATGATGACATCCCTAGCAAACAGATGAAGACCACTACTGGCAACCATATGCTGCAGTCACGGCCTGGCACCCTGGGCTGCCCTTTCACTATGTCAGCCCCCATCACTAAAGTAGTCAAAAACGATGCATACACCGCTCCTCGTCCCCCAGTGCCTGTGGCACCCACAAGACCCAACCCTAGTGTAGGGGCCTCCCGCTCCTCTGCTCTCGCCTTACAGCCCATCTCCAGGACCCTCCGGCAGGCAGGGCCCACAGCGGAGCCCAACTCCCAGCCTCCTCCACCCCCACAGCCTACCTTCAGTCCTCTGGAGGGGACTAAGATAACAGTGAATAATCTGCACCCCCGTGTCACTGAAGAGGACATAGTGGAGCTGTTCTGTGTGTGCGGTGCCTTGAAGCGAGCGAGGCTGGTGAAGGTGGGGATTGCTGAAGTGGTGTTTGTGAGGAAGGAGGATGCTGTGAGCGCCTACAGGAAATACAACAACCGCTGTCTGGATGGCCAGCCCATGAAGTGCAATCTTCACATACAGGGGAATGTCATCACTTCAGACCAGCCCATTCTTTTGAGGCTCAGTGACACTCCAGGCACTGGAAGGAAAGAGGGTCTGCCCCTCTCTTTGTCTCGCCCCGGGGGTCAGCCAGCCTCCTCTCAACCCACACCTGAGGTGGATCCCCAGACCATCCTCAAGGCCCTGTTCAAATCTACTGTCCAGACCCCCTCTACCACAGAGTCTCCCGGTTCACAGTGCACAGCCTTCCGCATTAAGATATAGCTTTTTagtacatccacacacacacacacacgtgtcacaCAACACATAATACATCCACCCTCCTGTTTGACAGAGACATCTACTGAGATGATCAAATAGCATGATACTGTATTTGTATAAATTGTGACCGATCATTGGCAGGTTGTAACATCTCAAATTAACACTGGTGCCGTCGTCCAGATTTTTAGGAAAGAAAACCATTTGTAGCCGTGGCGACCTACATAGATGCATGTCTCATAACCGACCAATGTGAGGCAGTCTGATTTGTTCATTTATTGTTTTAATCAAATTTGGTGGGGGGATATCACATGGTTCACTTTTACAACTGTTCAAATAGTTCACATTGAACACCCCTCTTGGAATCATGAGATGTTTTGTGCTGGTTGGAGTCTCTCCCACCCCAACCGATGGTCTCACTATGACCTGATGCACAAACCCATGAAGATAATTGTACTGTGAACTACAGGCAACAGTGGTTCTTGTACTGGACATAATATAAAGTTTGATTTCAAAATGACTTGTACACATGCTCGTATTCCGTTGTGGTATTTGGTTTGCCATTCTCCTTTTTGTGGCATTCAGGTTGTTCTATGCTTATTTGTGACTGTTATTTTACTCTATTGCTTTTTGCGCAGCTCAGAGAAGTTATGCTAATTTGCTCAATTTATGTTCAACTGTAAATTGCTTTTTACAGCTGCCTTTTCTGTCAGTCATGAAGATATGGTAGTGAGGTCAGATCTATGTACAAGTTAATTACTGCCAATAAATATGTTGCTTTATAAAGATGT

Function

NR:

description
polymerase delta-interacting protein 3

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K22414 POLDIP3; polymerase delta-interacting protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558065.2 True 2276 mRNA 0.49 11 43011969 43017789

Neighbor

gene id symbol gene type direction distance location
LOC118938458 NA coding upstream 10685 43000710 ~ 43001284 (+)
ndufa6 ndua6 coding upstream 18661 42990701 ~ 42993308 (+)
LOC110486447 LOC106607129 coding upstream 21493 42963102 ~ 42990476 (+)
nol12 LOC106607131 coding upstream 58663 42951079 ~ 42953306 (+)
srebf2 LOC106607132 coding upstream 63383 42932944 ~ 42948586 (+)
rrp7a zg14 coding downstream 737 43018526 ~ 43020625 (+)
wbp2nl wbp2 coding downstream 9225 43027014 ~ 43032851 (+)
LOC110486456 LOC106601209 coding downstream 49696 43067485 ~ 43079588 (+)
LOC110485181 grin2b coding downstream 62002 43079791 ~ 43219400 (+)
tcf20 LOC106601207 coding downstream 210040 43227829 ~ 43252961 (+)
G1176475 NA non-coding upstream 2343 43009315 ~ 43009626 (+)
G1176460 NA non-coding upstream 46922 42964803 ~ 42965047 (+)
G1176459 NA non-coding upstream 47431 42964333 ~ 42964538 (+)
G1176458 NA non-coding upstream 50242 42961488 ~ 42961727 (+)
G1176482 NA non-coding downstream 6243 43024032 ~ 43024434 (+)
G1176484 NA non-coding downstream 7974 43025763 ~ 43026230 (+)
G1176486 LOC106601210 non-coding downstream 16414 43034203 ~ 43035231 (+)
G1176504 NA non-coding downstream 33521 43051310 ~ 43051602 (+)
G1176505 NA non-coding downstream 35061 43052850 ~ 43053093 (+)
LOC110486430 LOC106601228 other upstream 281858 42725254 ~ 42734581 (+)
G1176278 LOC106607164 other upstream 527449 42482377 ~ 42484520 (+)
G1176084 LOC106607173 other upstream 720103 42289091 ~ 42291866 (+)
G1175667 NA other upstream 1085313 41926275 ~ 41926656 (+)
LOC110485182 LOC106607095 other downstream 241386 43259175 ~ 43265600 (+)
LOC110486464 mgp other downstream 379960 43397744 ~ 43402308 (+)
LOC110486465 bglap other downstream 388379 43406158 ~ 43407943 (+)
G1177750 NA other downstream 1101089 44118878 ~ 44121922 (+)
LOC110486491 LOC106607082 other downstream 1156595 44174050 ~ 44211083 (+)

Expression


Co-expression Network