LOC110486456 (LOC106601209)


Basic Information

Item Value
gene id LOC110486456
gene name LOC106601209
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43067485 ~ 43079588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941140.1
ttattatttttttgagcCACCGTTGGGCAGAGCAGGGCACCTGGCTCACGCCCAGGAGGCAGCCCCGTTCCAAAACAAATGCAATCGCTTTTCACCCGGTGCAAACACCTCCCACCAGGCCCTGAAACCCGTCACTGAATCAATCACCTGCTTGAGTTGCCTGGCAGGCTttgcactctaccaatcagagTTGACAGggtgtaaagaggaggaggagcagctgcATGATTGTGGGTCAAGCATGGATGTTGCTGTCGCAGAGGAACCCCCGAGGAAAATTTTCAGAGCAAAAAAGACTATGAAAGTCAGCGATCGACAGCAACTGGAATCCCTTCacaccactctctcctctccatgttcTTTCCCATCCCCACCTCAGCCATCAATGGTAAATGGGAAGCACTGTGAAGCTGTGTCTATGGAAGTAGATAAAGAAATACATGGAACTACACATACCACCACTCATGCCCCTTCCTCCCTGACGGCCACATCCCTAACCACTGAGACCTCTGAGGAACCAACAGCCTCTGAATTACTGGTTTCTTCGTCACAGAACATACACTCTGATGTAAAAAAATTtcaggaagaaggagagggggacaaGGAGTCTACATTTCCCAGCCTTGAGGTAGAAGACAAAATGAATGGACTGGGAAATGTGGATATAAATTCCAAGGAGGATGTTATTGTTTCCTCTCCTGTGAGTTCAGAGAAAGCAGTAGCAGTAAGAGAGCGTGAGGTTGATGGTATGGAAGTAGACCTGGTACCAGGTACCACTCCGTACACAGTGCCCATATTGAACCCTGCCGcctccctcctcctgtcctccgaCACGGCTGTAgagtctgtctcttccccttcgcTCTCCCCGTCATACACGGCAGAGTCAGACCAGGAGGTCAGGCCAGGGTTCCTGGTGCTTAGTGAAGATGATGATGTCCAGGATGAGAGTgatgaagaggagaaagaggaggaacagagggaaAGTGAAGGAAAGGTAGAAAAAGTTGAGGTTAACCTGGAGAAGCCAGAACAATTTGAAAGTGGTGCTCCAGTTGACTGTCCGTCCCCTTCATCACCAACGCCCCTTCAGATTGATGAAGAAGAGGAGGGTGCTGCTCTACAGAAGAAACGATCCTTGTCTGGAGACTCGGAGGATGGAGGTCAAaagcagggagaaagagactTGGAAGTGGTGGAGAGGCATAACAAGAGGCCCAGAGTAGACTGTGAAGAGCTGGAGGCTCATGTGGAGCTGAAGATCAGTGGGAGCGCAGAAAGGCAACACAAGCTAAAGAAGGTGGTGCAGCAGCTTGTTGAGGAGCAGTTGTGTTTTCTGCAGCTCACACTATTTGACAAGAGTCTTCAGGGGCTCAGAGACAGACTGGACAAAATAGAAAAACACCCGAGTGCACTCAAGAGCCTGCAGGCAAAGATTGGCCGACTTTCTAAGAAAGTTGGAACTGCCATCCAAGCCAGGGAGAATGCCAAGACACCTCCAGAGgtaccattgccacctacctCTACTTCTGCCACAGCAACCACCCAAGCAGGATCAGGAATTCTCGGCCTGAGAACAATGGGGAACAACATACCGGATCCAAAGCGTAATGATCAGAGCAGTCAAACCCCTACTCCTGTACGTACTGATCAGGGCTGTCAAACCCCTACTCCTGTACGTACTGATCAGGGCTGTCAAACCCCTAGTCCTGTACCCACCGCCCCCTTGCTACCTTCCCCCTCTTCCACAGCCTCAGCCGGATCTCAACCCACATCCCAAACCTTGATGCTGAGCACCTGTGTTACCCCAGCACCCGGCCCGTCCGCCTTCCCTCTCCAGTCATTCCTCATACAGCTGCCTGGTGGAGGGACAGCCATCCTTACCAACCCAACCAACTCTCAGCTAATCCCAGTGTGCGCACTTCCCGCCATGACGAGTTCCACCGTGACACCGACCACTGCCTTCCTCCTACAGAGGACTACTCCCTACACTCCTGCTGCTCCCAAGCCGCCCTCTGCTTCTGCCCTCTTATCTCATTTCGCTGCCACACCCACAACCACGACTACACCCACTGACTCACCAGCTGCCACAACGTCCCACATAACCACACCCATAACCATGCCCAGGGccacaaccataaccacaacAACACCCTGGGCCATACCTATGGCCACACATGCAACCACACCCAGGGCCACAACCATAACCACACCCAGGGCCACAACCATAACCACACCCAGGGCCACAACCATAACCACACCCAGGGCCACAACCATAACCACACTCTGTGCCACACCCAATATCTCCCACCCTGGAGCCACTGGGACAGTCGGCAGGCCCAgctccagtgtgtctgtctccgtctgtgaGTCCATTCGGCTTGTGTCTGTGGCGAACTCCACTTCATCCTTACCAAGATTCTCAATGCCAGCCACCACAGGCACTCAACCCTCTGTGCGACCAGCTGCCTCTGTGCATCCAGATGCCCCAGCACAACTAGCTGCCCCTGTACCACAGGTGCCTGCGAAAACAGGTAGTGAATCTACAAATACTCCTTCAGACTCCACACAGGCATCTCACCCTGCCAAATCAGAAACATTCATAGacctgacagaggaggaggaggaggaggatgatgatgatgttctAGTTACTGGAGTACTGAAGGCTCCGATGGCTTTGAAGGCCTCACCCTCGCCTTCAACAGCGGGTCAGCGAACAACAGCCACACAGCAAACCTCCACTTCAGTCGGCACACAGGCCGTGAGGTCATCTCTTGGTCAGATGTCAGGTGTTGGGTCTCCGCATGCTGTTTATCATCGCCCCCTGCAGGGCTCCCCATCTGAAAGTGTTGCCTCCGCAACAACCACTTCTTCATCTTCCATACCATGCCCCcagccctctccccttccccccttGCCTGTCCCACCTCAAACTATCAGCCTGCCCCTCGAAGCGGCCAGCACCAGCCCTCCACAGCAGCCTCTGCTCAAAATAACCCGCGTTCCGAGCCAGAATGACGGCATCGTGCTCTCCTGGTCTGTGACTGAGGTAGACAGGAGCTGTGCTGCCGTGGACAGCTACCACCTATACGCCTACCACCAGGACCACTCTGGCCCCAGCACACACCCCCTACTCTGGAAGAAGATCGGGGAGGTGAAGGCCTTGGCTTTGCCCATGGCCTGTACACTCACACAGTTTGTCTCTGGTTCCAAGTACTACTTTGCAGTCCGTGCCAGGGACGTGTTTGGCCGCTTTGGACCTTTCTGTGAGCCTCAGTGCACTGACGTCTTAACGTCCCCGAAAACTCCAATTTAACCAAATGTTAAGATTTAAGTTAATTTGTTGTGTCAAGTCAAAACGAGGAGGAATATTGATTCTGtagattttttctttttttcttctggtAACCAAGGTAGCCAAAGTGAAAAGTTCAGTAAAGCTTCTGGCAAATCTAATTGCTCTATTTTCAAATGAATGTGTGTTGGTATTTTTTTATCAGAATTTTGCACTCAAATCATATTTGAGCCCAGGTGTTTACAAGAGTGACTTATCATTGGAATGTTACTGGAAAATGTTGTTGCCCATCCTGGTGAAATGGGTTGGCCCCATGTGATCACTGTCTGCCTGCCGTGTGTTTGACCACATGGGTGCAGCATTGTACCAAAATGGTGTCTTTGACACAGGACGAGAGGATTTGAAAATCAAACCTGAAATGAGACATGAACCTGCCAAAGCCTATGTGACCTCTCTTTTCCTCCTGCTCAGTTCCTGCCACTGGGGGACATGTTCTACAGTTAAATGATACATGATCTAGGGCctcctgtgtatgtgtgcacaTCCTGTGCCATTTTTTTTCTATGGATGGAATTTAATGTTTTTTTGAACCTTTTTGTAATTTGGCTTGAACAGAACTAGTCATGTTTTCATATTGCAAACAAATAacttcaaaaagtaggctacctgcGTGTGTTCGTCTAGTCCAAAATTATTCCAGCATCCTAACATTTGATGAGTAGATGAATGGGAAGAGACATCCGTTACGAAACACCAAAAATTGTAATGACATTCTGTGATTTTCATTAGGTCTACACTCTTGTAGCCTGAATTAATTGATGCGTCTTTGACAAAAGGACCTGTTTTGTAGAACGAAAAGTTGGGACGCCTGAAAAGGGGCTGAGAGATGGGACTGTCCCGGGATGACAAGTGCAACCacgtggatatatatatatatattaaaccatgaccGGCGGGGGTGTTCgttttattttaatatttaccTCTGTCGTACTACAAATAGCATTTTAAAGAAATATTATAATTGTTCAATTAGTATTATTTAGAGACCCCGCATTTAGGGGGACTCCTGTCTCAATTCAGGGGTCCCCCTGGACCCAATGTAATTCACACACTGTCTGCTGATCGCCTTAATGGCTGGTTACAAACATGTAAATAAATGCATTGGACTTGACAACAGATTGACCGAAAGGTTAAGTACCAAGAAATATTCAGACTTGTAATTGTTCATTAAAATGTTTAGAAACTA

Function

NR:

description
activating transcription factor 7-interacting protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941140.1 True 4547 mRNA 0.49 12 43067485 43079588

Neighbor

gene id symbol gene type direction distance location
wbp2nl wbp2 coding upstream 34634 43027014 ~ 43032851 (+)
rrp7a zg14 coding upstream 46860 43018526 ~ 43020625 (+)
LOC110486450 LOC100380702 coding upstream 49696 43011969 ~ 43017789 (+)
LOC118938458 NA coding upstream 66201 43000710 ~ 43001284 (+)
ndufa6 ndua6 coding upstream 74177 42990701 ~ 42993308 (+)
LOC110485181 grin2b coding downstream 203 43079791 ~ 43219400 (+)
tcf20 LOC106601207 coding downstream 148241 43227829 ~ 43252961 (+)
LOC110485182 LOC106607095 coding downstream 182186 43259175 ~ 43265600 (+)
LOC118938568 NA coding downstream 198035 43277623 ~ 43277680 (+)
LOC110486461 LOC106607100 coding downstream 228780 43308368 ~ 43347397 (+)
G1176506 NA non-coding upstream 13124 43054156 ~ 43054361 (+)
G1176505 NA non-coding upstream 14392 43052850 ~ 43053093 (+)
G1176504 NA non-coding upstream 15883 43051310 ~ 43051602 (+)
G1176486 LOC106601210 non-coding upstream 32254 43034203 ~ 43035231 (+)
G1176484 NA non-coding upstream 41255 43025763 ~ 43026230 (+)
G1176522 NA non-coding downstream 9779 43089367 ~ 43089581 (+)
G1176526 NA non-coding downstream 13133 43092721 ~ 43093027 (+)
G1176555 NA non-coding downstream 79315 43158903 ~ 43159430 (+)
LOC110486447 LOC106607129 other upstream 95274 42963102 ~ 42990476 (+)
LOC110486430 LOC106601228 other upstream 337374 42725254 ~ 42734581 (+)
G1176278 LOC106607164 other upstream 582965 42482377 ~ 42484520 (+)
G1176084 LOC106607173 other upstream 775619 42289091 ~ 42291866 (+)
G1175667 NA other upstream 1140829 41926275 ~ 41926656 (+)
LOC110486464 mgp other downstream 318161 43397744 ~ 43402308 (+)
LOC110486465 bglap other downstream 326580 43406158 ~ 43407943 (+)
G1177750 NA other downstream 1039290 44118878 ~ 44121922 (+)
LOC110486491 LOC106607082 other downstream 1094796 44174050 ~ 44211083 (+)

Expression


Co-expression Network