LOC110485182 (LOC106607095)


Basic Information

Item Value
gene id LOC110485182
gene name LOC106607095
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43259175 ~ 43265600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939744.1
gtgtctgaatagtttccggatgcactgtaaacagagtttatactgtatttGGTATTACACTTACTGGAGTCTCTCACAGGCTTTGAAAAAGCACCTACGAATAAGCTACCAGTACGGAAAGTGCCTCTGGCTGCTGGTAAGCTTTCTTAACTTAGACATAAGTGTTTCCCAACACATGTCTAACTTTTGTTTAACCAGCTAAACAGCTGCTCTTATTGAAAATGTGTTTGGAGTTACCTTTGtagctaataggctatgttagagtttacacttcctcttccaattatGTGTGGAGGTCAAAATAAAGTGGGGTGAGGGGTGTCCAAGCAAGGAAAGACTTTGGGGGATTAGATTGTTTTCTTTCAGTTGGGTTGGAAATTCCTCTGAATACTTTCTTTTCCTTTTCCATATGCTCTCTCTCAACTATCTTAATACTGTTTAAAAGAGAGCCTCACAGTGCACTTTGTCAACGTCCATGTCTGATTCCTGTCATGTTAAGTGCTCTGACAGAGTCTGTGTCTGAAGTGGGCCCGTCTACCTTTGTCATTATATAGTATAGACTGAGGGAGTGTTTGACCAGCTGTTAAAATACAacttctccccctctccaacACCTCCTCCCACCCCAGGTTCACGCTCTCTCCCTTCATCATGTCGTTTCTGTCCTGGGTGCGGTCCCCCAAGCTCACCTTCTTCCAGACGCTAGTGTCTCTGGTCCTGGGGGCCATGGCCCTCTTGTCGTCCTACTGGTGTGAGGGCAGTCAGAAGGTCCCCAAGCCCCTCTGCTCGGCCAACAAACTGACCAAATGCATACCTGTGCCCGGGGTCTCGCACAACTCCACCTCCATCCAGTTCTCCTGGGAGACGGGGGACGACCGCTTCGTCTTCCCTGCCTTCCATGCAGGCATGTGGATGAGCTGTGAGGAGAACATCTACACTGACGCCTGGGgaatGTTGTGGTTGTCGGTGTCAATGGAGCTCATGTATGTTGGGCTGCTGTGTGTCAGCTGTGTGCTGCTGTCTCTTCAGTTGTGTCTGGATGCCTTTTGGCCCTCACAGATCTGGGGACAGCTCCTCAATGCCTACTCTGCAGTCTTCACTATATTAGGAGGGTTACTGGGAATGGTGGCTCACATGATGTTCATGCAGGTGTTTCAGACTACTGCCTCTATGGGTCCAGAGGACTTCAAACCACACAGCTATGGCTACTCCTGGGGCTTTTATGTGGCATGGCTGGCCTTTACCTGCTGCATGTTGTCAGGAGTCTCcaccctcaacaactacaccAAGAAGACTGTAATGGAGCGTAGGCGCAAAGCCCGCCTGTACCCCCCTCGATTCCCTGACATAGAGcccctgctagccccggcccccTACTACTGCCCTCCGCCCCCTCACCCCTGTATGTCCCCACCATCCCCAGAACTCTCACCCCTGTCACCCTACTATGACTCCCCTTCGCTACCCCCAACCTCATCACCCCGTCCACTcacccactccctctccctcccccactgcTACACACTCCCCCACCCTGAATACTTCCCACCTCCCCCATCCCACCCTGCTCCCCTGTCCCCCTATCACCgccactccctcccctctccctccatcactctaccCCTGTCCGTCCACAGTTACACACCCCAGTACTACTCAGAGGAcaggggcagagagatggaggaagaggggagggagtacTCCGATGAGGAGTACAGCCCActttga
>TU1341730
ACAGCCACACACTCCACATAGGTTAGTGTGAGGGTCAACACCCTGAATCACTGACATGCTATCTGATGgcgaggaagagaagagagagaggagacgggtaGAGGAATAGGAGTCCATTAAATACTACCACAATCTACACTCACTACATGAAGAACTGAAGATCAAGAGGAAATAAGACGGGTTGAAGAAGGTTCACGCTCTCTCCCTTCATCATGTCGTTTCTGTCCTGGGTGCGGTCCCCCAAGCTCACCTTCTTCCAGACGCTAGTGTCTCTGGTCCTGGGGGCCATGGCCCTCTTGTCGTCCTACTGGTGTGAGGGCAGTCAGAAGGTCCCCAAGCCCCTCTGCTCGGCCAACAAACTGACCAAATGCATACCTGTGCCCGGGGTCTCGCACAACTCCACCTCCATCCAGTTCTCCTGGGAGACGGGGGACGACCGCTTCGTCTTCCCTGCCTTCCATGCAGGCATGTGGATGAGCTGTGAGGAGAACATCTACACTGACGCCTGGGAGGAAAAGTGTCGCAGTTTTCTTTCTTTAACTCCAGGGGGTGAAAAAGgaatGTTGTGGTTGTCGGTGTCAATGGAGCTCATGTATGTTGGGCTGCTGTGTGTCAGCTGTGTGCTGCTGTCTCTTCAGTTGTGTCTGGATGCCTTTTGGCCCTCACAGATCTGGGGACAGCTCCTCAATGCCTACTCTGCAGTCTTCACTATATTAGGAGGGTTACTGGGAATGGTGGCTCACATGATGTTCATGCAGGTGTTTCAGACTACTGCCTCTATGGGTCCAGAGGACTTCAAACCACACAGCTATGGCTACTCCTGGGGCTTTTATGTGGCATGGCTGGCCTTTACCTGCTGCATGTTGTCAGGAGTCTCcaccctcaacaactacaccAAGAAGACTGTAATGGAGCGTAGGCGCAAAGCCCGCCTGTACCCCCCTCGATTCCCTGACATAGAGcccctgctagccccggcccccTACTACTGCCCTCCGC
>TU1341731
CCACCCTGCTCCCCTGTCCCCCTATCACCgccactccctcccctctccctccatcactctaccCCTGTCCGTCCACAGTTACACACCCCAGTACTACTCAGAGGAcaggggcagagagatggaggaagaggggagggagtacTCCGATGAGGAGTACAGCCCActttgactgtatgtgtgtgatacTTACCTATGAGCCAACATGCATTTGGATTTTGACAGAGCAAATCAGTGTGAAGTAGTCTGAAGCTCTCTGTCCAAACTTGTATGCATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939744.1 False 1728 mRNA 0.52 4 43261774 43265494
TU1341730 False 999 TUCP 0.54 6 43259175 43265156
TU1341731 True 275 lncRNA 0.53 1 43265326 43265600

Neighbor

gene id symbol gene type direction distance location
tcf20 LOC106601207 coding upstream 8813 43227829 ~ 43252961 (+)
LOC110485181 grin2b coding upstream 42374 43079791 ~ 43219400 (+)
LOC110486456 LOC106601209 coding upstream 182186 43067485 ~ 43079588 (+)
wbp2nl wbp2 coding upstream 228923 43027014 ~ 43032851 (+)
rrp7a zg14 coding upstream 241149 43018526 ~ 43020625 (+)
LOC118938568 NA coding downstream 12129 43277623 ~ 43277680 (+)
LOC110486461 LOC106607100 coding downstream 42874 43308368 ~ 43347397 (+)
LOC110486464 mgp coding downstream 132250 43397744 ~ 43402308 (+)
LOC110486465 bglap coding downstream 140664 43406158 ~ 43407943 (+)
LOC110486466 LOC106601201 coding downstream 143239 43408733 ~ 43415132 (+)
G1176587 NA non-coding upstream 4840 43256690 ~ 43256934 (+)
G1176586 NA non-coding upstream 5127 43256345 ~ 43256647 (+)
G1176585 NA non-coding upstream 6154 43255208 ~ 43255620 (+)
G1176596 NA non-coding downstream 279 43265773 ~ 43267274 (+)
G1176607 NA non-coding downstream 7541 43273035 ~ 43273254 (+)
G1176612 NA non-coding downstream 15419 43280913 ~ 43281240 (+)
G1176617 NA non-coding downstream 19012 43284506 ~ 43284777 (+)
G1176601 NA non-coding downstream 20264 43285758 ~ 43296728 (+)
LOC110486447 LOC106607129 other upstream 289563 42963102 ~ 42990476 (+)
LOC110486430 LOC106601228 other upstream 531663 42725254 ~ 42734581 (+)
G1176278 LOC106607164 other upstream 777254 42482377 ~ 42484520 (+)
G1176084 LOC106607173 other upstream 969908 42289091 ~ 42291866 (+)
G1175667 NA other upstream 1335118 41926275 ~ 41926656 (+)
G1177750 NA other downstream 853384 44118878 ~ 44121922 (+)
LOC110486491 LOC106607082 other downstream 908890 44174050 ~ 44211083 (+)
G1178363 NA other downstream 1402574 44668068 ~ 44668459 (+)
LOC110485182 LOC106607095 other upstream 170 43259175 ~ 43265600 (+)

Expression


Co-expression Network