LOC110486460 (LOC106607104)


Basic Information

Item Value
gene id LOC110486460
gene name LOC106607104
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43285756 ~ 43297849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558082.2
CCAGACGAAAACCCACAATACATTGTTTTCTTCACACACGTCTGAAATTTGAGAACGGGTTGGTGTTGCAGCTACATTCTGCAGTGTGAAGAGATTGATCTGCACGTAAATAATTCAGGACACCAGACTATTTCTGACTTCCTGAGTGTAGCGTGTTAGCAAACGTTTGATCATGGCACTGGACGGATGTGGCCAGCTGTGCAAGTGTATCCTCATCCTTTTCAACATCCTTTTTGCCCTGGTGGGTTTTGCAATGTTGGGGTTGGGCTTGTGGCTGAGGTTCAGCTCTGAGACCAGAGGATTTTTCAACATAGACCTCAACACACAACAGTTTGTCATCGGTGTGTCAGTGTTGATTGCGTTAGGAGCAGTGATATTGCTCGTGGCTGTTTTCGGAGACTATGGAGCATGCAATGAGAATAGGACTGCATTGGGAGTGTTTTCCTGCCTGCTGGCTATCCTGGCTGGATTAGAGATTGGAGCCGGTGTCTTCGCCTACATGAGAAGCGatgagGTGGGAGAGCAGCTGGCAAAATTCTATTTAACTGTGTACGCTCAGTATGTGGACAAAGGAGACCCTGGCTTGGCTGTTACCCTGTCCATGTTCCACAATGTGttGCACTGCTGTGGACTCATTGGTGCCTTGGACCCCTTGGTCAAAAAAACATGTCCCGATACCGGCTTTTTGGAGACCTTCACTCTCCCTGCCTGCCCCACAGTGATCGTCAACCTCTTTGAGTCCAATGCGCCTCTGGTGATGGGCCTCTTCCTTGGGACTGCTGCTTTGCTGATCTTGGCCCTGGTGTGCAGCTCCCTCCTCAGCAAAGAGATCCAGCgctcccagtcctctcctcccccctacatcctcctctcctctactgtcctctcccccCCTAACCAGGACCCTGTGGTCTTTTCCCCGCTCCCCGTCATCATACCTGTGGCTGATGCACTGTAACTCCTTACCCCTCCATCTTTATTTACACCAATGATCTATGCTTCTTTCCTTGCACACAGATTCTTTCTTTCCACTGCTCAGTAAGGTCAATGTCTAGTCTCACTGCAAGCTATCCAACTTGTCCCATTTAAATGTCTGGAATTAGTGTTTCTCATCTTCAATTCACACTCCTTTGGTACATTTGCTTGTCTCAGAAGCCATATTTTAGGTGGGGATTTGCACTAATGAATCTCACCCTGTTGCAGCATGTGGTCTAATCCTGAAGGTGATGGGGGGGTGATTGCTCCACCCTGCTCTCTTTATCTGATCCCATTCTGCTTAACCCTTTCCTCCCTGcatccccacctcctcctgttgCTCCTAGATCACGGCCCTGGTGTGCTGCAGCATCCTCATGAAACAGATCAAGAGGAGTCACCTCTCTGCCCTCTGTACCACAGCCAGGCTGTGTATTGAGGGGACAGGACCACCACCATATTCAAACACAGTTTTCTCCACTGGGAGACCAAACCAGATAGTTGTCATTCAGTGATCATCACCCCATCCTTTCACATAATACTTCTGGAGAGGCGCCCAATAAAAACGGATGTCCTAATTAGCTTTCATTCATTTGTGTAGCTGGTCAGGGCTCTAGATCATCTTGACATGCCATTAGCAGTGCTCAGAAGAATGAGACCACACCATCCATTTAGATGACATGTGAACAGGGCAGACAAGACACTGTTGCTCTGTAGCAGCTGTTTGTTCTGCCCCTCTTCCCACTTTAGTCCTTaatcttctttctttttttaaaaacaaccttTTTAATCACTTATCATATGTTAGTGAATAGCTGCTCTTGCTGACATGAATGCTGCTTACATGAAAGGggccatttgattagatattcAATGCTCCGTATGACTGAGGGCACTACTGTAATCAGAGAAGTGAAGCTGctcatgcttttttttttttaaatcactgtcCAACATGTTGACCTTTCCCTGTAATCACATCAGTTTAGAATCATGTCTGTGTTGCAATACATATCAATGTACTGCTGACAGAATTGTGATCCTAGAAAATGTATTTCTTAAAGttaatttttacaaggattaaactGCGAACTGGATTGTTCTGTAGTTGGTAGTCTCCATGCCAAATTGAGTACATTTATTAACAATGTAGTTAATTAACATCTTAATCATTCTTTACGATACTAATCCCCCAACTTCAGCTCCACTTGTACGCTCTGAGGTGATATGAAACACCTTTGATTTCTTCATTCCATGTTTGGATGTTGACGTCGGATGATACCATATACAAAGTTGAGTCCGGGATCCTTAAAAATGTCTCTGGAACGTTAAAATTTGCTTGACTTATTCTATTACGTTGATGCCCATTTCTAGCACGTGAACTGATTTTTATAAGCAAACTAATGTATGCAACTAGGATATATGTCCTTGTAATTTTGAGTCACTCAAACCTTATTGCTATTGGGAATCATCTCCCTGAATGCCCTGTCAAGCAGCAGTTGTAATGGAGGCTGAGTGTGATAGAATAAACACTTCATATGGAGTGCCTTGGTACACTAGCCAAAGTGTTGCCCAGTAAACGCAGGAGTGGGCCCAACGGTGTACCTAACCAGGTCAATTGTCTTGTAGTGAGTCTTTTTTTTATAGATTTTCAATTTCCAACACTTGTTTTGCACTGGAGAACCGCTTATGTTCTGTTGCAAGCTAATACTGACTGTGTaacgtttattttttattttatttaactaggcaagtcagttaacaaattcttatttacatagacagcctaccccagccaaaccctaacgacgctgggccaattgtgcgccgccctatgggactcccaatcccggccggttgtgatggaatcgaaccagggtctgtagtgacacttctTGTACTGAGATTCTGCACCAAATGTGGAGCTTTTTGTTCAAATAAAGTGTTTCATCCCCTCTT

Function

NR:

description
CD9 antigen-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558082.2 True 2934 mRNA 0.45 9 43285756 43297849

Neighbor

gene id symbol gene type direction distance location
LOC110486458 LOC106601205 coding downstream 13702 43265779 ~ 43272054 (-)
LOC118938293 LOC106562616 coding downstream 219869 43053669 ~ 43065887 (-)
fmc1 LOC106607127 coding downstream 236007 43039494 ~ 43049749 (-)
LOC110486454 LOC106607126 coding downstream 246547 43032510 ~ 43039209 (-)
LOC110486451 LOC106607121 coding downstream 260047 43019077 ~ 43025709 (-)
LOC110486463 LOC106607099 coding upstream 48929 43346778 ~ 43353148 (-)
LOC110487544 NA coding upstream 57880 43355729 ~ 43362239 (-)
LOC118938297 LOC106596055 coding upstream 187833 43485682 ~ 43487100 (-)
LOC118938302 LOC106591500 coding upstream 189253 43487102 ~ 43489593 (-)
LOC118938304 LOC106596055 coding upstream 201951 43499800 ~ 43500729 (-)
G1177170 NA non-coding downstream 5116 43280439 ~ 43280640 (-)
G1177162 NA non-coding downstream 11515 43274004 ~ 43274241 (-)
G1177161 NA non-coding downstream 11810 43273708 ~ 43273946 (-)
G1177151 NA non-coding downstream 30043 43255408 ~ 43255713 (-)
G1177120 grin2b non-coding downstream 66389 43213117 ~ 43219367 (-)
G1177175 NA non-coding upstream 56451 43352501 ~ 43362354 (-)
G1177237 NA non-coding upstream 110149 43407998 ~ 43408371 (-)
G1177507 NA non-coding upstream 173557 43471406 ~ 43472241 (-)
G1177509 LOC106601199 non-coding upstream 174794 43472643 ~ 43473143 (-)
G1177513 NA non-coding upstream 182165 43480014 ~ 43562861 (-)
G1177047 NA other downstream 209403 43059430 ~ 43076353 (-)
G1176972 LOC106607127 other downstream 236212 43039174 ~ 43049544 (-)
G1177027 NA other downstream 277998 43007379 ~ 43007758 (-)
G1177025 NA other downstream 278432 43004756 ~ 43007324 (-)
LOC110486438 LOC106601158 other downstream 476676 42801570 ~ 42809120 (-)
G1177238 LOC106607096 other upstream 116310 43414159 ~ 43415103 (-)
G1177552 NA other upstream 303514 43601363 ~ 43647736 (-)
G1177709 LOC106601291 other upstream 675690 43973539 ~ 43974057 (-)
zgc:158403 LOC106601368 other upstream 679298 43977147 ~ 43992248 (-)

Expression


Co-expression Network