LOC110486463 (LOC106607099)


Basic Information

Item Value
gene id LOC110486463
gene name LOC106607099
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43346778 ~ 43353148 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558087.2
GAGGGGAAGTCAGGGGTGGGTCAGTCCAAACGTCTCTCCTATCGCTTCACCAGTAGATGTAAATGTGggtgaggtaaaaaaaaaaaacaccatctTTCGTTTCCAAAATAATttactccctctctcattcctctcttcctgctttccctccctccctcttgcacTGCTTGTGAAAGATATGGGAACATCCTTGAGTTAGGAGGCACGTTCATACATAGATGACTGTCTACTGATGCATCAGCTGAGAGTTTATTGCAAATCTCAAGTGGAACTACAAGTAGGATCAGAAATAACCACCGACCACAGAGGTGGatgcactgaagcctcaggataAAGGGTAGCAAGGGCCCATCTGAGCAGGGAGTATACCATCAAAACAGAAAACCAGAGAGGAAGGACACAACAACAtgcagacaaaacaaaacaaaaggatGGTCTTTCCATTCCAGACACACAAATCTATTTTTCTCATCCTACTATTCAATGTCCCACTTCCCAGCACATGTCAGACCACACTGAATGCCAGCACCCTCAACCAAACCATCCATCCCAGTGCTGCCACTAGCTCTAATGCTATCCCCAATACCACCACTAACAATCCCACTGTAAAATCCACTATCAACCGAGGCACCACTTCCTTCCTCCAACGCAACTCTTCCTCAAACTCCACTTCCCAGGATGCAATCCTGGGGTGTGGGGCGGATCTGGACCCTGTGTACTCCTACCTGTGTGACCGTCAGGCGGCGTGGGGTATCGTAGTGGAGAGCCTGGCCTCACTGGGTTTTGTGGTCAGTTCAGGGCTGCTGGTGGGGCTGCTGTTCTGGACCCTGTGGATGTGTGTGTCGTCCCGCCAGCGCAGGGGCATCGGGGGGAGCGTAGCTTCCATGGCTCTGTTCCTGCTCAGCACGGCGGGGGTCTTCGCCCTGACCTTTGCCTTCGTCATCCGCCTCACCACCCAGACATGCCCCACgcgcctcttcctgttcggggtGCTGTTCTCCCTGGCTTTCTCCTGCCTGCTGGCTCGCTGCCTGGCCCTGCTGGGCTTCTCTGTAGCCCGGGGCTGGGGGGAGGCTGGGGTGGCTCTGGCCCTCTCCACCCTCCAGGTGGTCATCGCTACAGAGTGGCTGATCATCGTGCTGCTGCGGGACGGCCAGCCCTGCCAGTACTCCCAGGGGGAGTTTGTCATGTTGCTCATCTACGTGCTGGTTCTGCTGGCCGCCGGCCTGGTCCTCTCCCTGTGCTGCCTCTGCCGCTCCTGTCTCACCTACAGCTATAGCGGGGGCAGCCACCGACAGAGCCAGGTCCAGGCCACGCTGCTCTGCCTCACCCTGCTGCTGTCTGCTGCTATCTGGGTGGTGTGGATCGCCCTGCTGACCCGGGGTAACATGGAGATGGGCCGGCGGCCGCAGTGGGATGACCCGGTGCTGAGTATAGCCCTGGTGGCCAACGGCTGGGTCCTGCTGCTGGGCCACGGACTAGCCCAAGTGGTTCTCCTCTGCAGGTGGGAGGCCAGCTCCAAGGAGGGCCCCCTAGACTTTGGTGGATGGACCAGTCCCAACGCCAACCTGCCAGGGCTGGGGAGCCcgaaagaagggagggagaacagaagcTTTGAGAACGACGGCAGAAAACAAGACCCCGTTTTCCAATCACCATATGAGTCTGGATTCTCAATGACAGAAATAGATCCTGACAAAGATTACTCCATCCCTCGTCCTCAGACCACCAACATCAGCGAGCCCTATGATGTATACTATGGACACAGCCTGTCTGATTAAGATCGCTTTGCTTTTCatgtacacacacccacagacaaaGACAACCTAACAGCTTAACATATATAAAAAAACGTTACAACCGCAATAGCATCtgctatatatgtgtatgtgactaatacaatttcatTTATACATGCACTCTCACATGGCCCAGAAATGTTTTGGAAGTTCAGCTACAAATGTACATGTCTTGTATAGAACCTGCATTGCAACATGATTTCCATAATTACGTGACTAAGGCTCAATTGATTAATTACATGTTTCTTTACTCAGGCTGGATCCAGATAGAATGAGCTTACTGAATCTGAGCTGAATGTGACAAGTGTTTTTGCAACATGCTACTTGAAAACACCAGAGACAGTGTCTAATAGTCTCAGGCAGGAGGAGGCGTGAATCTGTCTGTATCAGGGTGCCAAACTGCAGGGATGGGCAGGGGCAGCGCCAGGCATGTGTGAAGGAGAGACAGGACCTGGCAGCGATAAAATAGACCCTTGTCATCATGTCTTAACATCTTACGTAAAGGTGCatgccatttttttattttttacatcccACTTTATAAACACGTTTATGCATATAAATACATGCTATGCATATTGTGCCGTTTGAAAAAGTGTTATTAAAATGGAATGTTAAAAGGTATTTTTGTTAGTCGTATCTAACAGCAGAGGGCTGATTCATTCCCACAAAAAGAAGCATAAGCTAGACTGAGTGGTACTACGGTTTTCACCACTAGGTGACACTGTACAAGATGTGAATTATTGTTGGTGGGATTCAATTTACCTCAATGTTCATACCATTATTGAGCCACCAAATGTAAACAAATGCATTCCATCATGTCATTTCCCCATGCAAATAGCAGTGTACTGATATTAATGATAGATCTGTAGCGCTCTAGGAATGACATGAGAGCAATATAACGTTCTACTCTGCCTGCCTATAGCCATCATGGTCATCTCATAATGGGCGAGTCAGTCGGGTTAATACCTCAATAATTCAGTGGATCCATGTGCTTTATTGTTTCACTGATCAAACAGCCCTCAATGTAATCCTTTCACTTAGTCCTACTTCAATCATCTGGAAGTGCATGTCATCAAATTGGCAATTAGCCTCTTGTGCATTAGAGCAATTAACAGGGATATGAGATTTCCTCCAAGCTCAACCCAGACATTCACATTCATTAACTTTAGACACAATGGTTAGTTAGACACAATGATTAGACACAATGATTGGTTAGGGAAAATTGGCTACTTTAGAGTTCAAGTTGGCATAGTTTCGTCCAGCTCTACTACTAGTGAACAATAGGTATGAACTGTGTGACAGAGCCATACCCTATGATTACATAAAAATAATCAATGGCAACTAAATCTAGTAAACATTTTACCCATATAAGGAGTTGAGAAAAGAAGAGTATAAAAACCAAACCGTTTATTATGTACATTCAATAACAATGACAGGAAATAGAAGGCAAACATGAAGatggaaaaaaatgaaaagaaataCACAAGTCActtgaagaaaataaaaacaatatcaCTTGGATCAATGAGCTTAGCAATGCACATGTGAAAACAAAAAAAGTCGCATGCAATTCCAACTCATATGAAATCCCGGTCCAACAACTCCCACTAGGTTGACTTCAGCACAGTGCAGGGGTAAGTCAGACACACAGTTGGGTCTAAGGTGATCGCCGTGAGAGGGCACGTGGGAGTCTCCACTGCTGGGTAACAAGTGGAAGGTTATGGAGGGATGGTCAGTTGCTGTGCCATAGAGCAGTCTTGTGCTACAATGCAAGGCATTGGAAACAACAGTTCAGTCTGTGCTGGACTGCTGTGTGCATGGTGGGACAACATCATTGGTTACTTAACATACTTCAAAGGAAAAACTGCAGGGGTTCAACATTCCAAATTAAAATTGAACTAAGGGATACTGGTAATTCAAATGATACCATGACCACAGAAGAACATAGATAAACCCAGGCATAAACTTAACAAAACAAGCAGTATTTTACAtatcattaccccccccccccc

Function

NR:

description
G-protein coupled receptor family C group 5 member D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558087.2 True 3814 mRNA 0.47 4 43346778 43353148

Neighbor

gene id symbol gene type direction distance location
LOC110486460 LOC106607104 coding downstream 48929 43285756 ~ 43297849 (-)
LOC110486458 LOC106601205 coding downstream 74724 43265779 ~ 43272054 (-)
LOC118938293 LOC106562616 coding downstream 280891 43053669 ~ 43065887 (-)
fmc1 LOC106607127 coding downstream 297029 43039494 ~ 43049749 (-)
LOC110486454 LOC106607126 coding downstream 307569 43032510 ~ 43039209 (-)
LOC110487544 NA coding upstream 2581 43355729 ~ 43362239 (-)
LOC118938297 LOC106596055 coding upstream 132534 43485682 ~ 43487100 (-)
LOC118938302 LOC106591500 coding upstream 133954 43487102 ~ 43489593 (-)
LOC118938304 LOC106596055 coding upstream 146652 43499800 ~ 43500729 (-)
LOC118938072 LOC106595933 coding upstream 147666 43500814 ~ 43502295 (-)
G1177170 NA non-coding downstream 66138 43280439 ~ 43280640 (-)
G1177162 NA non-coding downstream 72537 43274004 ~ 43274241 (-)
G1177161 NA non-coding downstream 72832 43273708 ~ 43273946 (-)
G1177151 NA non-coding downstream 91065 43255408 ~ 43255713 (-)
G1177120 grin2b non-coding downstream 127411 43213117 ~ 43219367 (-)
G1177175 NA non-coding upstream 1152 43352501 ~ 43362354 (-)
G1177237 NA non-coding upstream 54850 43407998 ~ 43408371 (-)
G1177507 NA non-coding upstream 118258 43471406 ~ 43472241 (-)
G1177509 LOC106601199 non-coding upstream 119495 43472643 ~ 43473143 (-)
G1177513 NA non-coding upstream 126866 43480014 ~ 43562861 (-)
G1177047 NA other downstream 270425 43059430 ~ 43076353 (-)
G1176972 LOC106607127 other downstream 297234 43039174 ~ 43049544 (-)
G1177027 NA other downstream 339020 43007379 ~ 43007758 (-)
G1177025 NA other downstream 339454 43004756 ~ 43007324 (-)
LOC110486438 LOC106601158 other downstream 537698 42801570 ~ 42809120 (-)
G1177238 LOC106607096 other upstream 61011 43414159 ~ 43415103 (-)
G1177552 NA other upstream 248215 43601363 ~ 43647736 (-)
G1177709 LOC106601291 other upstream 620391 43973539 ~ 43974057 (-)
zgc:158403 LOC106601368 other upstream 623999 43977147 ~ 43992248 (-)
epor LOC106601362 other upstream 674164 44024053 ~ 44029014 (-)

Expression


Co-expression Network