Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110487544 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 43355729 ~ 43362239 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma-like isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0030553 | cGMP binding | molecular_function |
| GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021559457.2 | True | 1162 | mRNA | 0.47 | 4 | 43355729 | 43362239 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486463 | LOC106607099 | coding | downstream | 2581 | 43346778 ~ 43353148 (-) |
| LOC110486460 | LOC106607104 | coding | downstream | 57880 | 43285756 ~ 43297849 (-) |
| LOC110486458 | LOC106601205 | coding | downstream | 83675 | 43265779 ~ 43272054 (-) |
| LOC118938293 | LOC106562616 | coding | downstream | 289842 | 43053669 ~ 43065887 (-) |
| fmc1 | LOC106607127 | coding | downstream | 305980 | 43039494 ~ 43049749 (-) |
| LOC118938297 | LOC106596055 | coding | upstream | 123443 | 43485682 ~ 43487100 (-) |
| LOC118938302 | LOC106591500 | coding | upstream | 124863 | 43487102 ~ 43489593 (-) |
| LOC118938304 | LOC106596055 | coding | upstream | 137561 | 43499800 ~ 43500729 (-) |
| LOC118938072 | LOC106595933 | coding | upstream | 138575 | 43500814 ~ 43502295 (-) |
| LOC110486469 | LOC106591500 | coding | upstream | 153183 | 43515422 ~ 43518265 (-) |
| G1177170 | NA | non-coding | downstream | 75089 | 43280439 ~ 43280640 (-) |
| G1177162 | NA | non-coding | downstream | 81488 | 43274004 ~ 43274241 (-) |
| G1177161 | NA | non-coding | downstream | 81783 | 43273708 ~ 43273946 (-) |
| G1177151 | NA | non-coding | downstream | 100016 | 43255408 ~ 43255713 (-) |
| G1177120 | grin2b | non-coding | downstream | 136362 | 43213117 ~ 43219367 (-) |
| G1177237 | NA | non-coding | upstream | 45759 | 43407998 ~ 43408371 (-) |
| G1177507 | NA | non-coding | upstream | 109167 | 43471406 ~ 43472241 (-) |
| G1177509 | LOC106601199 | non-coding | upstream | 110404 | 43472643 ~ 43473143 (-) |
| G1177513 | NA | non-coding | upstream | 117775 | 43480014 ~ 43562861 (-) |
| LOC118938075 | LOC106595933 | non-coding | upstream | 191136 | 43553375 ~ 43622157 (-) |
| G1177047 | NA | other | downstream | 279376 | 43059430 ~ 43076353 (-) |
| G1176972 | LOC106607127 | other | downstream | 306185 | 43039174 ~ 43049544 (-) |
| G1177027 | NA | other | downstream | 347971 | 43007379 ~ 43007758 (-) |
| G1177025 | NA | other | downstream | 348405 | 43004756 ~ 43007324 (-) |
| LOC110486438 | LOC106601158 | other | downstream | 546649 | 42801570 ~ 42809120 (-) |
| G1177238 | LOC106607096 | other | upstream | 51920 | 43414159 ~ 43415103 (-) |
| G1177552 | NA | other | upstream | 239124 | 43601363 ~ 43647736 (-) |
| G1177709 | LOC106601291 | other | upstream | 611300 | 43973539 ~ 43974057 (-) |
| zgc:158403 | LOC106601368 | other | upstream | 614908 | 43977147 ~ 43992248 (-) |
| epor | LOC106601362 | other | upstream | 665073 | 44024053 ~ 44029014 (-) |
