ddx47 (LOC106607097)


Basic Information

Item Value
gene id ddx47
gene name LOC106607097
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43415407 ~ 43418459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558094.2
CATTTCCGTACATGCGTAGTTTAGCGTAGACGGCATGTTGGCAAACAAGCATGGCGGACGACTCGGGAAAAAGTGTTGCGATAAAAACAGATGGCGCAAAGGATGAAGATTCTAGTagtgatgatgataacagtaacGTTAATATCGCGGAAAATGACAAGCCAGTGAAGACCTTCAAAGATCTGGGTGTAACTGAAGTGCTGTGTGAAGCTTGTGAACAGTTGGGATGGAAGACTCCTACAAAGATCCAGGTAGAGGCCATACCTGTAGCCTTACAAGGAAAGGATGTAATTGGCTTAGCAGAGACCGGCTCAGGGAAGACCGGGGCTTTTGCTCTGCCCATCCTGCAGTCACTCCTCGCTTCCGCTCAGAGGCTGCACACGCTCATACTCACCCCCACCAGAGAGTTGGCTTTCCAGATAGCAGAGCAGTTTGAGGCCCTGGGCTCCAGCATCGGAGTCAAGACCGctgttatcgtTGGAGGAATTGACATGATGTCCCAATCCCTGGTCCTGGCCAAGAAACCTCACATTGTCATTGCCACCCCCGGGCGGTTGATAGACCACTTAGAGAACACAAAAGGCTTCTCACTGCGAGCGCTGAAGTTCCTGGTGATGGATGAGGCAGACCGGATCCTCAACATGGACTTTGAGACTGAGGTAGACAAGATCCTAAAGGTTATTCCCAGAGACCGACGAACGTTCCTCTTCTCTGCTACCATGACCAAAAAGGTCGCCAAGCTGCAGAGAGCAGCTCTGAAGGATCCAGTTAAATGTGCCGTTAACACCAAGTATTCAACAGTAGAAAAACTTCAGCAGTACTACGTCTTCATACCCTCCAAATACAAAGATTGTTACCTGGTGTCCATCATCAACGAGCTGGCTGGGAACTCCTTCATGATCTTCTGCAGTACGTGTAACAATGCCCAGCGTGTGGCGCTGCTGCTCAGGAACTTGGGCATCACTGCCATCCCCCTGCATGGGCAGATGAGTCAGAACAAACGTCTAGGGTCGCTGAACAAGTTCAAGTCTAAGTCTCGCTCTGTGTTGCTGGCGACGGACGTGGCATCAAGAGGACTGGACATTCCACATGTAGACTGTGTTATTAACTACGACATCCCAACTCACTCAAAGGACTACATCCACAGAGTGGGGCGAACCGCCAGAGCAGGACGGTCTGGAAAATCAATCACATTTGTCACACAGTATGATGTGGAGTTGTTCCAGCGAATCGAAACTCTGATTGGCAAGAAGCTGCCTGCCTTCCCCACGCAGGAGGAGGAAGTGATGATGCTGGTGGAGAGAGTGAGCGAGGCGCAGCGATTCGCCAGAATTGAAATGAAGGAACAAGGAGAAAAGAGGAAGCGGcccagaggagaagagggggatgacacaGAGCAGTCCAGCGGTGTGAGGAAGAAAGTAAGAGGTGGCGCTGGTGGTGGCGGAGGGGGgggcggaggaggaggaaaacGTGGTGGAGCAGCATGGAGAGGAGGACGTTAAAGTTGCCAGTAGAGATACACAATACTGTACATGTTGTCAGATACTATGTAATTTTCTTCTTGATAtaaaacatcaacatcatcacAACCACCACATCATGGAGACAGGCTATTTAATTACCGATCACTTGTTCAATTTACTAATCAATATTTCCATTTGTAATAAAATGTTTATGTAAAATCAAGCTTATGTTCAGTGAGTTGTGTTCACAATTTGATAATAAAGCTTGGTCAACATGAATGGAA

Function

NR:

description
probable ATP-dependent RNA helicase DDX47

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14777 DDX47, RRP3; ATP-dependent RNA helicase DDX47/RRP3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558094.2 True 1750 mRNA 0.49 11 43415407 43418459

Neighbor

gene id symbol gene type direction distance location
LOC110486466 LOC106601201 coding upstream 275 43408733 ~ 43415132 (+)
LOC110486465 bglap coding upstream 7464 43406158 ~ 43407943 (+)
LOC110486464 mgp coding upstream 13099 43397744 ~ 43402308 (+)
LOC110486461 LOC106607100 coding upstream 68010 43308368 ~ 43347397 (+)
LOC118938568 NA coding upstream 137727 43277623 ~ 43277680 (+)
LOC110486468 LOC106601199 coding downstream 646 43419105 ~ 43494095 (+)
LOC110486470 LOC106601199 coding downstream 86969 43505428 ~ 43507937 (+)
LOC118938300 NA coding downstream 102800 43521259 ~ 43523671 (+)
LOC118938074 LOC106601199 coding downstream 119191 43537650 ~ 43541706 (+)
LOC118938299 NA coding downstream 154325 43572784 ~ 43575146 (+)
G1176657 NA non-coding upstream 28776 43386265 ~ 43386631 (+)
G1176637 NA non-coding upstream 53180 43359788 ~ 43362227 (+)
G1176628 NA non-coding upstream 88799 43326087 ~ 43326608 (+)
G1176622 NA non-coding upstream 110372 43304814 ~ 43305035 (+)
G1177263 NA non-coding downstream 9633 43428092 ~ 43428682 (+)
LOC118938305 LOC106601199 non-coding downstream 242318 43659366 ~ 43662323 (+)
G1177344 NA non-coding downstream 358995 43777454 ~ 43778795 (+)
G1177379 NA non-coding downstream 405189 43823648 ~ 43871199 (+)
G1177389 NA non-coding downstream 456780 43875239 ~ 43876250 (+)
LOC110485182 LOC106607095 other upstream 150251 43259175 ~ 43265600 (+)
LOC110486447 LOC106607129 other upstream 443196 42963102 ~ 42990476 (+)
LOC110486430 LOC106601228 other upstream 685296 42725254 ~ 42734581 (+)
G1177750 NA other downstream 700419 44118878 ~ 44121922 (+)
LOC110486491 LOC106607082 other downstream 755925 44174050 ~ 44211083 (+)
G1178363 NA other downstream 1249609 44668068 ~ 44668459 (+)
G1178425 NA other downstream 1441410 44859869 ~ 44864183 (+)
LOC110485188 LOC106601310 other downstream 1501904 44878675 ~ 44943951 (+)

Expression


Co-expression Network