LOC118938297 (LOC106596055)


Basic Information

Item Value
gene id LOC118938297
gene name LOC106596055
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43485682 ~ 43487100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941165.1
CCCAGCCATATGTGGGAAGACAGCCCATGTCCAGTATGGAGCCAGGGCAAGCTCCCTGGGGAAAAACAACATGGACAACAAACCTGCAAACTCCCCGAAAGGCACCCTTGATAGACCAGAGACACCAGCCAGACAATATCTACAAATTGTCAAGTGTGATCTCACATCTGGGAGACAACATGTATACAGGCCACTacatcagtgatgttttggacAGCCGTGGCAGTGGGTGGCTCTGCCTGGATGACACACATGTCTTGAGGACAGATGAGGCCACTGTGCTGAAGGCGATTTCACAGACTGCCTACATCCTGTTCTATGTCTGCAGGTAAGGCTCTAGGCCACAAATTTGAGAAGAATGTCACAAATGGAGTCAATGACGACAATCAGTCCCTTTCACCTGTAATCCCTCTGTATGTGTTATTTTTCAGACATTGTATGTACATGTAAGATCTCCCTGTCATTTCTCATTGAAGTGGAGCAGGTGAAGGAGACCAGGCCCCTCACTACCAGGAGAAGGATCAGGAGAACCCATCATTAAACTCAGGGAGAGGCACAGCGCTCAGGGACCACCTGGAGTAGCACCTACCACACACCAAGAAACATCAGATTAATCGAATTAGGCTGCCCTACACCACCCTCAACTGCCTTAGACCACCATaaagctgccctagaccaccatcaggctgcccatcaccaccatcaagctgccctagaccaccatcagactgccctacaccaccatcaagctgccctagaccaccatcaagctgcc

Function

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 26-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941165.1 True 775 mRNA 0.50 4 43485682 43487100

Neighbor

gene id symbol gene type direction distance location
LOC110487544 NA coding downstream 123443 43355729 ~ 43362239 (-)
LOC110486463 LOC106607099 coding downstream 132534 43346778 ~ 43353148 (-)
LOC110486460 LOC106607104 coding downstream 187833 43285756 ~ 43297849 (-)
LOC110486458 LOC106601205 coding downstream 213628 43265779 ~ 43272054 (-)
LOC118938293 LOC106562616 coding downstream 419795 43053669 ~ 43065887 (-)
LOC118938302 LOC106591500 coding upstream 2 43487102 ~ 43489593 (-)
LOC118938304 LOC106596055 coding upstream 12700 43499800 ~ 43500729 (-)
LOC118938072 LOC106595933 coding upstream 13714 43500814 ~ 43502295 (-)
LOC110486469 LOC106591500 coding upstream 28322 43515422 ~ 43518265 (-)
LOC118938073 LOC106595933 coding upstream 47517 43534617 ~ 43535764 (-)
G1177509 LOC106601199 non-coding downstream 12539 43472643 ~ 43473143 (-)
G1177507 NA non-coding downstream 13441 43471406 ~ 43472241 (-)
G1177237 NA non-coding downstream 77311 43407998 ~ 43408371 (-)
G1177175 NA non-coding downstream 123414 43352501 ~ 43362354 (-)
G1177170 NA non-coding downstream 205042 43280439 ~ 43280640 (-)
LOC118938075 LOC106595933 non-coding upstream 66275 43553375 ~ 43622157 (-)
LOC118938078 LOC106595933 non-coding upstream 94775 43581875 ~ 43642076 (-)
G1177553 NA non-coding upstream 122285 43609385 ~ 43624534 (-)
G1177552 NA non-coding upstream 127834 43601363 ~ 43647736 (-)
G1177561 NA non-coding upstream 173677 43660777 ~ 43689793 (-)
G1177238 LOC106607096 other downstream 70579 43414159 ~ 43415103 (-)
G1177047 NA other downstream 409329 43059430 ~ 43076353 (-)
G1176972 LOC106607127 other downstream 436138 43039174 ~ 43049544 (-)
G1177027 NA other downstream 477924 43007379 ~ 43007758 (-)
G1177709 LOC106601291 other upstream 486439 43973539 ~ 43974057 (-)
zgc:158403 LOC106601368 other upstream 490047 43977147 ~ 43992248 (-)
epor LOC106601362 other upstream 540212 44024053 ~ 44029014 (-)
G1178281 NA other upstream 975854 44462954 ~ 44463226 (-)

Expression


Co-expression Network