LOC118938299


Basic Information

Item Value
gene id LOC118938299
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43572784 ~ 43575146 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035552.1
ttcagtctaaTATCCAACCTTTCTGAccgacaagctgtcttcatcagcgTATACTGTTAGGAGCACCTTAACACAGATGGATCTATTAATCTCTGACCGTACCTCATTGAAAAGGTGCCACTCTGCCTAGTGACTGTAAACTAAACAAAAATACTAACgtgGACACCCTGACCCTGGAGCTTGTGGCAGAGCGCAGCATGGCCCAGAAGAGTGAGAATGCGCGCCAGCAGCTGGAGAGGCAGAACAAGGACTTGCGAGCCAAGCTGGGCGAGCTGGAGGGTTCCGGgagccccccccacacacacacaaacagttgtgTATATTGGCCAAATTGATGGTTCTCGTTACTAATACCTCTCCTGGCCCCCTCTGTCCCCTGCAGGCGTGGAGGCCCCATCAGTTTCTCCTCCAGCCGCTCGGGCAGGCGTCAGCTGCAGGTGGAGGGGACATCGCTCGACCTCCTATCCGACGATGAGGTGGAAAACAAGACCACGGACGCCAATGCCAACGAGACGCCAGCAGCTCCCCAACCAGGGTAGACGCGCTCCCTACAGCCCACACGCAGCATGGCCTCCGCCCCCACAAACCTTACCCCTGTCCTCCTAACCCCAGACACCAGCAGTGGACCCCACTACTCTGCCTTACCCCTCTATGGCAAGCTGCAGGGCCAAGCAAATCCATCACCTCCTCCATATGAATATACCGCACATCAAGCCTTGGATTCGTTTTTAACATCAATTGCAGATAATAGTGCATTTTTATTGCATAGGCGTCTGAGTGTGCATAGGCACTCGAAAACAAATAGCAGGAGTTTACCATAATTATGTTAAGCTACTTCCCTGGAACAGCCATTAGAATCAAACAGCCCTCTAGCTAGAATTAACCACTGTCATTTCAGCTGGTTTACTGGCACACAGGTGGACGACTGCACACAAGTCGGTAAAAACATGTGTCTTTCATGATTGTACAGTATTGGACCAGGATATGTAAAACAAAGCACAACATAAGCGAGGGAATTATTTTTAAATGGTAGCCTAAATGACGATCACACCAAATTTTTTTCATCAAAGCCACCACTGTCATAGAGATACTGCAATCCACTTAGTTTAGTATAAAAATAACTATGTGACTAACTCTTTGGTAGCAGGTTTGTAGTGAATTAGATTGTACCACGCCATGTTGCCTCAGCATTCCCCCTATATATATGACCAGCAAAAGACCCTGTTAACTTTACCAATATAACCTTGTCCAATAACCCaccattttatatttgacatatcAATCTACTTTAAGTGGTGTACGATAATGTGTGGAATTAGGTTTGTCAGACTTGGAGCAAAGGCCCTTTTTTTTAGAAAGACAGCCCAAATGTGTGCTTGACATACTATAATATTGCTATGTATAATTCTGGCTATTCAGTTATGTTTTCTGTACCATGTACAAAATACTTAACTCAAAAAGGTCTCTTTGACATCTCGTGTCACCTTAATTTCAATGCATTTCAAATGGCTGAATAATATTAGCATGATTTACAGAAGGGTAATTCATGTTTTATTGAAGTTTTATTGAGTGTTAGAGCGTTGGTTTTAATTCAGTGGTTCAGGGTAGAGCAATCATTCAATTTGAATATGCACACTTGTTGATGCCTTGATTATTAAATGTTAAACATAAATGaccattttgtaaatgactaatTACATATTTGAggcctttattattattttaagccagaacaaattgggggaaaaaaaggtTTATCTGTTTCTTTTGAAAGACACTTCTCAATAAAGAcatgagggggaaaaaagtgtATAGTGTTTGAACCAGTTTCATAGCTTTAGTGTCATATTATACCATAAGCACCTCTCCCATCGTGTTGGTGTGAACCAGTGTTATAACAGAATGATTTATGGAGCCTTCTGTCTGCCAGGCAGAAAGTAGAATTTCATTGGGTTcaaagctttaacatcctgaagGTTGTTATTATTAGTGGACTGGCTGTTGACGACCAGGTATTCATTATCTCCTTTTATTTCTTGTATTTCtagactttttttgttgttgttgtaaaagaCCAATAAACATATCCATTATAGAAAAA

Function

NR:

description
myosin heavy chain, embryonic smooth muscle isoform-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035552.1 True 2101 mRNA 0.42 2 43572784 43575146

Neighbor

gene id symbol gene type direction distance location
LOC118938074 LOC106601199 coding upstream 31078 43537650 ~ 43541706 (+)
LOC118938300 NA coding upstream 49113 43521259 ~ 43523671 (+)
LOC110486470 LOC106601199 coding upstream 64847 43505428 ~ 43507937 (+)
LOC110486468 LOC106601199 coding upstream 78689 43419105 ~ 43494095 (+)
ddx47 LOC106607097 coding upstream 154325 43415407 ~ 43418459 (+)
LOC118938294 LOC106601199 coding downstream 10587 43585733 ~ 43589540 (+)
LOC118938295 LOC106601199 coding downstream 24499 43599645 ~ 43616052 (+)
LOC118938298 NA coding downstream 52418 43627564 ~ 43629976 (+)
LOC118938079 LOC106601199 coding downstream 68792 43643938 ~ 43647438 (+)
LOC118938305 LOC106601199 coding downstream 84220 43659366 ~ 43662323 (+)
G1177263 NA non-coding upstream 144102 43428092 ~ 43428682 (+)
G1176657 NA non-coding upstream 186153 43386265 ~ 43386631 (+)
G1176637 NA non-coding upstream 210557 43359788 ~ 43362227 (+)
LOC110486461 LOC106607100 non-coding upstream 225387 43308368 ~ 43347397 (+)
G1176628 NA non-coding upstream 246176 43326087 ~ 43326608 (+)
G1177344 NA non-coding downstream 202308 43777454 ~ 43778795 (+)
G1177379 NA non-coding downstream 248502 43823648 ~ 43871199 (+)
G1177389 NA non-coding downstream 300093 43875239 ~ 43876250 (+)
G1177426 NA non-coding downstream 401568 43976714 ~ 43979752 (+)
LOC110486465 bglap other upstream 164842 43406158 ~ 43407943 (+)
LOC110486464 mgp other upstream 170504 43397744 ~ 43402308 (+)
LOC110485182 LOC106607095 other upstream 307628 43259175 ~ 43265600 (+)
LOC110486447 LOC106607129 other upstream 600573 42963102 ~ 42990476 (+)
LOC110486430 LOC106601228 other upstream 842673 42725254 ~ 42734581 (+)
G1177750 NA other downstream 543732 44118878 ~ 44121922 (+)
LOC110486491 LOC106607082 other downstream 599238 44174050 ~ 44211083 (+)
G1178363 NA other downstream 1092922 44668068 ~ 44668459 (+)
G1178425 NA other downstream 1284723 44859869 ~ 44864183 (+)
LOC110485188 LOC106601310 other downstream 1345217 44878675 ~ 44943951 (+)

Expression


Co-expression Network