LOC118938298


Basic Information

Item Value
gene id LOC118938298
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43627564 ~ 43629976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035551.1
tatttaggtagcctgttttcctttgtgttttgtgggtggttattttcagtctaaTATCCAACCTTTCTGAccgacaagctgtcttcatcagcgTATACTGTTAGGAGCACCTTAACACAGATGGATCTATTAATCTCTGACCGTACCTCATTGAAAAGGTGCCACTCTGCCTAGTGACTGTAAACTAAACAAAAATACTAACgtgGACACCCTGACCCTGGAGCTTGTGGCAGAGCGCAGCATGGCCCAGAAGAGTGAGAATGCGCGCCAGCAGCTGGAGAGGCAGAACAAGGACTTGCGAGCCAAGCTGGGCGAGCTGGAGGGTTCCGggagccccccccccacacacacacaaacagttgtgTATATTGGCCAAATTGATGGTCCTCGTTACTAATACCTCTCCTGGCCCCCTCTGTCCCCTGCAGGCGTGGAGGCCCCATCAGTTTCTCCTCCAGCCGCTCGGGCAGGCGTCAGCTGCAGGTGGAGGGGACATCGCTCGACCTCCTATCCGACGATGAGGTGGAAAACAAGACCACGGACGCCAATGCCAACGAGACGCCAGCAGCTCCCCAACCAGAGTAGACGCGCTCCCTACAGCCCAAAAGCAGCATGGCCTCCGCCCCCACAAACCTTACCCCTGTCCTCCTAACCCCAGACACCAGCAGTGGACCCCACTACTCTGCCTTACCCCTCTATGGCAAGCTGCAGGGCCAAGCAAATCCATCACCTCCTCCATATGAATATACCGCACATCAAGCCTTGGATTCGTTTTTAATATCAATTGCAGATAAAAGTGCATTTAAATTGCATAGGCGTCTGAGTGTGCATAGGCACTCGAAAACAAATAGCAGGAGTTTACCATAATTATGTAAAGCTACTTCCCTGGAACAGCCATTAGAATCAAGCAGCACTCTAGCTAGAATTAACCACTGTCATTTCAGCTGGTTTACTGGCACACAGGTGGACGACTGCACACAAGTCGGTAAAAACATGTGTCTTTCATGATTGTACAGTATTGGACCAGGATATGTAAAACAAAGCACAGCATAAGCGAGGGAATTATTTTTAAATGGTAGCCTAAATGACGATCACACCAAATTTTTTTCATCAAAACCACCACTGTCATAGAGATACTGCAATCCACTTAGTTTAGTATAAAAATAACTATGTGAATAACTCTTTGGTAGCAGGTTTGTAGTGAGTTAGATTGTACCATGCCATGTTGCCTCAGCATTCCCCCTATATATATGACCAGCAAAAGACCCTGTTAACTTTACCAATATAACCTTGTCCAATAACCCaccattttatatttgacatatcAATCTACTTTAAGTGGTGTACGATAATGTGTGGAATTAGGTTTGTCAGACTTGGAGCAAAGGCCCTTTTTTTTAGAAAGACAGCCCAAATGTGTGCTTGACATACTATAATATTGCTATGTATAATTCTGGCTATTCAGTTATGTTTTCTGTACCATGTACAAAATACTTAACTCAAAAAGGTCTCTTTGACATCTCGTGTCACCTTAATTTCAATGCATTTCAAATGGCTGAATAAAATTAGCATGATTTACAGAAGGGTAATTCATCTTTTATTGAAGTTTTATTGAGTGTTAGAGCGTTGGTTTTAATTCAGTGGTTCAGGGTAGAGCAATCAATCAATTTGAATATGCACACTTGTTGATGCCTTGATTATTAAATGTTAAACATAAATGaccattttgtaaatgactaatTACATATTTGAggcctttattattattttaagccagaacaaattgggggaaaaaaggttTATCTGTTTCTTTTGAAAGACACttctcaataaagacatgaagGGGAAAAAAGTGTATAGTGTTTGAACCAGTTTCATAGCTTTAGTGTCATATTATACCATAATCACCTCTCCCATCGTGTTGGTGTGAACCAGTGTTATAACAGAATGATTTATGGAGCCTTCTGTCTGCCAGGCAGAAAGTAGAATTTCATTGGGTTcaaagctttaacatcctgaagGTTGTTATTATTAGTAGACTGGCTGTTGACGACCAGGTATTCATTATCTCCTTTTATTTCTTGTATTTCtagactttttttgttgttgttgtaaaagaCCAATAAACATATCCATtatagaaaaaaaaaa

Function

NR:

description
myosin heavy chain, embryonic smooth muscle isoform-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035551.1 True 2151 mRNA 0.42 2 43627564 43629976

Neighbor

gene id symbol gene type direction distance location
LOC118938295 LOC106601199 coding upstream 11512 43599645 ~ 43616052 (+)
LOC118938294 LOC106601199 coding upstream 38024 43585733 ~ 43589540 (+)
LOC118938299 NA coding upstream 52418 43572784 ~ 43575146 (+)
LOC118938074 LOC106601199 coding upstream 85858 43537650 ~ 43541706 (+)
LOC118938300 NA coding upstream 103893 43521259 ~ 43523671 (+)
LOC118938079 LOC106601199 coding downstream 13962 43643938 ~ 43647438 (+)
LOC118938305 LOC106601199 coding downstream 29390 43659366 ~ 43662323 (+)
LOC118938080 LOC106601199 coding downstream 43311 43673287 ~ 43676319 (+)
LOC118938307 LOC106601199 coding downstream 56424 43686400 ~ 43702747 (+)
LOC118936423 LOC106601199 coding downstream 102933 43732909 ~ 43735602 (+)
G1177263 NA non-coding upstream 198882 43428092 ~ 43428682 (+)
G1176657 NA non-coding upstream 240933 43386265 ~ 43386631 (+)
G1176637 NA non-coding upstream 265337 43359788 ~ 43362227 (+)
LOC110486461 LOC106607100 non-coding upstream 280167 43308368 ~ 43347397 (+)
G1176628 NA non-coding upstream 300956 43326087 ~ 43326608 (+)
G1177344 NA non-coding downstream 147478 43777454 ~ 43778795 (+)
G1177379 NA non-coding downstream 193672 43823648 ~ 43871199 (+)
G1177389 NA non-coding downstream 245263 43875239 ~ 43876250 (+)
G1177426 NA non-coding downstream 346738 43976714 ~ 43979752 (+)
LOC110486465 bglap other upstream 219622 43406158 ~ 43407943 (+)
LOC110486464 mgp other upstream 225284 43397744 ~ 43402308 (+)
LOC110485182 LOC106607095 other upstream 362408 43259175 ~ 43265600 (+)
LOC110486447 LOC106607129 other upstream 655353 42963102 ~ 42990476 (+)
LOC110486430 LOC106601228 other upstream 897453 42725254 ~ 42734581 (+)
G1177750 NA other downstream 488902 44118878 ~ 44121922 (+)
LOC110486491 LOC106607082 other downstream 544408 44174050 ~ 44211083 (+)
G1178363 NA other downstream 1038092 44668068 ~ 44668459 (+)
G1178425 NA other downstream 1229893 44859869 ~ 44864183 (+)
LOC110485188 LOC106601310 other downstream 1290387 44878675 ~ 44943951 (+)

Expression


Co-expression Network