LOC118938553 (LOC106591500)


Basic Information

Item Value
gene id LOC118938553
gene name LOC106591500
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43680432 ~ 43683000 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035766.1
GCCAGGCTTTCTGGAGGCACTGTTAATGCTAAGAACAAGGAAAATAAGAAAATCCTTCAAACAGTCAAGCGCTGTCTTTCCGTTGTCAATGAGGACTATGAGGACGACAATGAACAGGTAAGATATTATTTGCTAAAAGACTCACTTAACAATAAACCTGGGACACGTGACAGTGTTTTTCCCCAGCTCTGTTTCAGTTGTAGTTGTTGATGTATTTTCTGCttctttcccattcttctcttagGATGCCCATGAATGTGTGTTGCTTCTCCTCTTTCAGCTGAAGGAGGAGGGTATGGCATTAAAGGGCTCACCAGAGCCATACACCTGCCCTGTGAAGCAGTTAGAATTCAAGCTGAAGACTTCCCGTACCTGCACCAGCTGTGGAGTTATAGTGTATGGTCAGGAGGATTACAATCACTTGTCCCTGAGCCTGAGCCATTACCTGCCACACAGCCTGGACCTCTACTTTAAGCCATCTGCGTTAGAGTGTGCATGCAGGGTGTGCTCAGGCAGCATGGCATCTGTGACTATGCACTTCCTCACGCTGCCCCGGGTCCTAATGCTTCATATCAAGCGATTTACTGCAGGCGACTGGGAGCCAAAGAAGGTGGATGATCCCATGTCCATCCCTGCAGAAATAACCCTCCCAGCCGTATGTGGGAAGACAGCCCATGTCCAGTATGGAGCCAGGGCAAGCTCCCTGGGGAAAAACAACATGGACAACAAACCTGCAAACTCCCCGAAAGGCACCCTTGATAGACCAGAGACACCAGCCAGACAATATCTACAAATTGTCAAGTGTGATCTCACATCTGGGAGACAACATGTATACAGGCCACTacatcagtgatgttttggacAGCCGTGGCAGTGGGTGGCTCTGCCTGGATGACGCACATGTCTTGAGGACAGATGAGGCCACTGTGCTGAAGGCGATTGCACAGACTGCCTACATCCTGTTCTATGTCTGCAGTGGAGCAGGTGAAGGAGACCAGGCCCCTCACTACCAGGAGAAGGATCAGGAGAACCCATCATTAAACTCAGGGAGATGCACAGCGCTCAGGGACCACCTGGAGTAGCACCTACCACACACCAAGAAACATCAGATTAATCGAATTAGGCTGCCCTACACCACCCTCAACTGCCTTAGACCACCATaaagctgccctagaccaccatcaggctgcccatcaccaccatcaagctgccctagaccaccatcagactgccctacaccaccatcaagctgccctagaccaccatcaagctgcc
>XM_036942623.1
GCCAGGCTTTCTGGAGGCACTGTTAATGCTAAGAACAAGGAAAATAAGAAAATCCTTCAAACAGTCAAGCGCTGTCTTTCCGTTGTCAATGAGGACTATGAGGACGACAATGAACAGGTAAGATATTATTTGCTAAAAGACTCACTTAACAATAAACCTGGGACACGTGACAGTGTTTTTCCCCAGCTCTGTTTCAGTTGTAGTTGTTGATGTATTTTCTGCttctttcccattcttctcttagGATGCCCATGAATGTGTGTTGCTTCTCCTCTTTCAGCTGAAGGAGGAGGGTATGGCATTAAAGGGCTCACCAGAGCCATACACCTGCCCTGTGAAGCAGTTAGAATTCAAGCTGAAGACTTCCCGTACCTGCACCAGCTGTGGAGTTATAGTGTATGGTCAGGAGGATTACAATCACTTGTCCCTGAGCCTGAGCCATTACCTGCCACACAGCCTGGACCTCTACTTTAAGCCATCTGCGTTAGAGTGTGCATGCAGGGTGTGCTCAGGCAGCATGGCATCTGTGACTATGCACTTCCTCACGCTGCCCCGGGTCCTAATGCTTCATATCAAGCGATTTACTGCAGGCGACTGGGAGCCAAAGAAGGTGGATGATCCCATGTCCATCCCTGCAGAAATAACCCTCCCAGCCGTATGTGGGAAGACAGCCCATGTCCAGTATGGAGCCAGGGCAAGCTCCCTGGGGAAAAACAACATGGACAACAAACCTGCAAACTCCCCGAAAGGCACCCTTGATAGACCAGAGACACCAGCCAGACAATATCTACAAATTGTCAAGTGTGATCTCACATCTGGGAGACAACATGTATACAGGCCACTacatcagtgatgttttggacAGCCGTGGCAGTGGGTGGCTCTGCCTGGATGACGCACATGTCTTGAGGACAGATGAGGCCACTGTGCTGAAGGCGATTGCACAGACTGCCTACATCCTGTTCTATGTCTGCAGGTAAGGCTCTAGGCCACAAATTTGAGAAGAATGTCACAAATGGAGTCAATGACGACAATCAGTCCCTTTCACCTGTAATCCCTCTGTATGTGTTATTTTTCAGACATTGTATGTACATGTAAGATCTCCCTGTCATT

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 37-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035766.1 False 1275 mRNA 0.50 8 43680432 43683000
XM_036942623.1 True 1113 mRNA 0.48 7 43680742 43683000

Neighbor

gene id symbol gene type direction distance location
LOC118938306 LOC106591500 coding downstream 9756 43667222 ~ 43670676 (-)
LOC118938552 LOC106591500 coding downstream 24819 43653409 ~ 43655613 (-)
LOC118938078 LOC106595933 coding downstream 38356 43581875 ~ 43642076 (-)
LOC118938077 LOC106595933 coding downstream 55897 43623012 ~ 43624535 (-)
LOC118938301 LOC106591500 coding downstream 69519 43608249 ~ 43610913 (-)
LOC118938308 LOC106591500 coding upstream 12000 43695000 ~ 43697608 (-)
LOC118938081 LOC106591500 coding upstream 44232 43727232 ~ 43728256 (-)
LOC110486471 LOC106595933 coding upstream 64528 43747528 ~ 43750702 (-)
LOC118938309 LOC106601194 coding upstream 69130 43752130 ~ 43753303 (-)
LOC110486474 LOC106601192 coding upstream 81967 43764967 ~ 43948465 (-)
G1177552 NA non-coding downstream 32696 43601363 ~ 43647736 (-)
G1177553 NA non-coding downstream 55898 43609385 ~ 43624534 (-)
LOC118938075 LOC106595933 non-coding downstream 58275 43553375 ~ 43622157 (-)
G1177513 NA non-coding downstream 117571 43480014 ~ 43562861 (-)
G1177566 NA non-coding upstream 18569 43701569 ~ 43734921 (-)
G1177589 NA non-coding upstream 71123 43754123 ~ 43754439 (-)
G1177608 NA non-coding upstream 140214 43823214 ~ 43871474 (-)
G1177614 NA non-coding upstream 150450 43833450 ~ 43865258 (-)
G1177633 NA non-coding upstream 152558 43835558 ~ 43836787 (-)
G1177238 LOC106607096 other downstream 265329 43414159 ~ 43415103 (-)
G1177175 NA other downstream 318078 43352501 ~ 43362354 (-)
G1177047 NA other downstream 604079 43059430 ~ 43076353 (-)
G1176972 LOC106607127 other downstream 630888 43039174 ~ 43049544 (-)
G1177709 LOC106601291 other upstream 290539 43973539 ~ 43974057 (-)
zgc:158403 LOC106601368 other upstream 294147 43977147 ~ 43992248 (-)
epor LOC106601362 other upstream 344312 44024053 ~ 44029014 (-)
G1178281 NA other upstream 779954 44462954 ~ 44463226 (-)
LOC110485184 LOC106601341 other upstream 800622 44467268 ~ 44545484 (-)

Expression


Co-expression Network