tspan35 (LOC106601289)


Basic Information

Item Value
gene id tspan35
gene name LOC106601289
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43998452 ~ 44010679 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559459.2
AAGTGAGCTCCTTGCCTCTGAAACCTGCCTCACTCCCACCTGTTTGCCTCAGCACATCCCCTCCCTCACTGTTTATAACCAACCTGCAGCCACCGAGAAGCACTGGAAGAGAACGAGAGAGTTTGTGTGTAGAAGAGAGAAAAACGCAGTACAGGTCACTCTCCGAGGACACAGGTAAATTAGCCACATTCGCTCTCCATCACCCCAGTGAAGGTAGAATAATTCATCAAGAATGGGTTGCTTCGGATTTCTGAAAGTCTTGATGTTTGTCTTTAATGGCATCATCTTTTTGGCAGGCGCTGCCATCCTGGGCGTGGGGATCTGGGTGAAGGTGGACAGCGGCTCGATCCTGGGGTTCCTCAAGGGTATAAAAGACGCTCCGGCGGAGATGAACCAGATCCTAAATGTGGGCTACCTGTTGATTGCTGTGGGGGCCGTGCTGCTGATCGTAGGTTTCCTGGGCTGCTGTGGCGCCATGAAGGAGAGCAGGTGTATGCTGCTCATGTTCTTTGTGATTGTGTTGGTGGTGTTCATTGCAGAGGTGGCTGGAGCAGTGGTTATCCTGGTGTTTAAACCCTTGGCAGGTCAGTTGATTGAGAAACTGGGAACCAAAGTGGTTCAGAACATTAGGAAGGACTATGGAGAAAATTCAGACGTCACCGCTCTCTGGAATGCTACTATGGATACGCTAAAGTGCTGTGGATTCTACAACTATACAGACTTCACTGACTCTCCATTTGAAAAATACACCCATCTCTATCCTCAACAGTGCTGCCACAGTGCTGATTTCAGCTCTTGTGATGATACAAGTGCTACAATCATCGGCTGCTTCCCAAAGCTTATGCAACTGATTGATAAAAACACTATTGTCATTGTGGCAGTGGCATTGGGGATCGCTGCCCTTGAGATATTGGCGATGGTTGTCTCCATGACTTTGTACTGCATAATAGGCTCAAAGAGTGACTGACTGAAAACCAATGGAGGGAGGGCCATAGAAACACCTGCCTGGATGGCATCTCTGGACACTCCTTAGGACAACTACAGGGATGGATGCATAAGAATCTCTGAAATCACCAAGACTGAAGAGAAATCTAAGGAAGCTTTGTGATAAGGAGAGGCGCCACACCACTGAGCCCGTTTAAATTAAATCCTGTACGAGATTATTGGATATGGGAAATGTCTATTTGTATTGAAATCTTTTATTGTATTGTATACATAGTTCACCTGAAAATGATGCAGTCTTACATTTAGATTGCAGCAATACATTGCGTCCTATGTCCATTCCACTCTGCACAGTATCATCAAGGTTTTTATTAAAATAACAATATCAATTCACTGTCAGGAAATATATATGTGCCACTTTTTATTAATTGATTTTCTACAGATGCTACATGCTCTGGAGAATGAATAAAAAGGTTGCAACTTGCAACGCTCTGAAAATAA
>XM_021559460.2
GAAGTGAGCTCCTTGCCTCTGAAACCTGCCTCACTCCCACCTGTTTGCCTCAGCACATCCCCTCCCTCACTGTTTATAACCAACCTGCAGCCACCGAGAAGCACTGGAAGAGAACGAGAGAGTTTGTGTGTAGAAGAGAGAAAAACGCAGTACAGGTCACTCTCCGAGGACACAGGTAGAATAATTCATCAAGAATGGGTTGCTTCGGATTTCTGAAAGTCTTGATGTTTGTCTTTAATGGCATCATCTTTTTGGCAGGCGCTGCCATCCTGGGCGTGGGGATCTGGGTGAAGGTGGACAGCGGCTCGATCCTGGGGTTCCTCAAGGGTATAAAAGACGCTCCGGCGGAGATGAACCAGATCCTAAATGTGGGCTACCTGTTGATTGCTGTGGGGGCCGTGCTGCTGATCGTAGGTTTCCTGGGCTGCTGTGGCGCCATGAAGGAGAGCAGGTGTATGCTGCTCATGTTCTTTGTGATTGTGTTGGTGGTGTTCATTGCAGAGGTGGCTGGAGCAGTGGTTATCCTGGTGTTTAAACCCTTGGCAGGTCAGTTGATTGAGAAACTGGGAACCAAAGTGGTTCAGAACATTAGGAAGGACTATGGAGAAAATTCAGACGTCACCGCTCTCTGGAATGCTACTATGGATACGCTAAAGTGCTGTGGATTCTACAACTATACAGACTTCACTGACTCTCCATTTGAAAAATACACCCATCTCTATCCTCAACAGTGCTGCCACAGTGCTGATTTCAGCTCTTGTGATGATACAAGTGCTACAATCATCGGCTGCTTCCCAAAGCTTATGCAACTGATTGATAAAAACACTATTGTCATTGTGGCAGTGGCATTGGGGATCGCTGCCCTTGAGATATTGGCGATGGTTGTCTCCATGACTTTGTACTGCATAATAGGCTCAAAGAGTGACTGACTGAAAACCAATGGAGGGAGGGCCATAGAAACACCTGCCTGGATGGCATCTCTGGACACTCCTTAGGACAACTACAGGGATGGATGCATAAGAATCTCTGAAATCACCAAGACTGAAGAGAAATCTAAGGAAGCTTTGTGATAAGGAGAGGCGCCACACCACTGAGCCCGTTTAAATTAAATCCTGTACGAGATTATTGGATATGGGAAATGTCTATTTGTATTGAAATCTTTTATTGTATTGTATACATAGTTCACCTGAAAATGATGCAGTCTTACATTTAGATTGCAGCAATACATTGCGTCCTATGTCCATTCCACTCTGCACAGTATCATCAAGGTTTTTATTAAAATAACAATATCAATTCACTGTCAGGAAATATATATGTGCCACTTTTTATTAATTGATTTTCTACAGATGCTACATGCTCTGGAGAATGAATAAAAAGGTTGCAACTTGCAACGCTCTGAAAATAA

Function

NR:

description
tetraspanin-1-like

GO: NA

KEGG:

id description
K17348 TSPAN1; tetraspanin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559459.2 False 1443 mRNA 0.45 8 43998452 44010678
XM_021559460.2 True 1405 mRNA 0.45 8 43998452 44010679

Neighbor

gene id symbol gene type direction distance location
zgc:158403 LOC106601368 coding downstream 6204 43977147 ~ 43992248 (-)
LOC110486474 LOC106601192 coding downstream 49987 43764967 ~ 43948465 (-)
LOC118938309 LOC106601194 coding downstream 245149 43752130 ~ 43753303 (-)
LOC110486471 LOC106595933 coding downstream 247750 43747528 ~ 43750702 (-)
LOC118938081 LOC106591500 coding downstream 270196 43727232 ~ 43728256 (-)
LOC110486478 LOC106601191 coding upstream 5911 44016590 ~ 44021722 (-)
epor LOC106601362 coding upstream 13374 44024053 ~ 44029014 (-)
rab3db LOC106601190 coding upstream 19276 44029955 ~ 44043512 (-)
LOC110486485 LOC106596625 coding upstream 34221 44044900 ~ 44047797 (-)
LOC110486482 cnn1 coding upstream 42618 44053297 ~ 44067701 (-)
G1177719 NA non-coding downstream 2490 43995754 ~ 43995962 (-)
G1177707 NA non-coding downstream 25097 43973148 ~ 43973355 (-)
G1177643 NA non-coding downstream 118111 43877142 ~ 43880341 (-)
G1177641 NA non-coding downstream 119984 43875226 ~ 43878468 (-)
G1177610 NA non-coding downstream 129113 43868189 ~ 43869339 (-)
G1177897 NA non-coding upstream 3893 44014572 ~ 44014850 (-)
G1177907 LOC100136012 non-coding upstream 53472 44064151 ~ 44064964 (-)
LOC110486490 NA non-coding upstream 105361 44116040 ~ 44118663 (-)
G1177962 NA non-coding upstream 161877 44172556 ~ 44173125 (-)
G1177987 NA non-coding upstream 195403 44206082 ~ 44206443 (-)
G1177709 LOC106601291 other downstream 24395 43973539 ~ 43974057 (-)
G1177552 NA other downstream 382444 43601363 ~ 43647736 (-)
G1177238 LOC106607096 other downstream 583349 43414159 ~ 43415103 (-)
G1177175 NA other downstream 636098 43352501 ~ 43362354 (-)
G1178281 NA other upstream 452275 44462954 ~ 44463226 (-)
LOC110485184 LOC106601341 other upstream 472943 44467268 ~ 44545484 (-)
G1178286 LOC106607023 other upstream 502757 44513436 ~ 44530531 (-)
G1178763 LOC106607027 other upstream 642393 44653072 ~ 44653468 (-)

Expression


Co-expression Network