LOC110486478 (LOC106601191)


Basic Information

Item Value
gene id LOC110486478
gene name LOC106601191
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44016590 ~ 44021722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558107.2
CAACAGACAGCTGTTGTCAAGATGGCGGATGActatggaggagaagagggtccCCTGGACGCTGAAGAAGCTGGGgatcaaataaaatcaattttgAGGCGTTGTAGAGGCCGTCCCAGGCTCACGGATTCTGACCGAGCACAAAGACGCCTCGAGTCCCGCAAGAAGTATGATGTTAGGCGAGTTTATCTTGGAGAATCTCACAAGGTTTGGAGTGAGCTTCGCCGGCGAACGAGTTTGAGTGACGCTGGACTTGCCGAGTACCTAATCCTGCTCAACTCCACGTACGGGGAGAGATACCAGCAAAAATACCGAGGGAAGACAGCCCCAGAAGTATGTACAAAACTGAAAAGAGGGAAAAATGAAAGAGTGTCTAGCCTTTGTAGCATGGTGACCTGGTACCAGGATCACTCCCAGACTTGCCCACATGAACCGCAGCTCAGAGCTCTGGAACCCCAACCTGGATTCTGCACCTCTGCTATCTGGCAGTGTGATGCTGACCATTCATTTGTGCAGCACCTCTCCTCACCACCAAGAGGGGCCAGTGAGCccgagatggagacagagacggaggaggaagTTGATAGTGACACAAGGACAGAGGATACCAGAGGAATCAtgaccaggaggaggaggagagagaccgaTGCCCACAGACAGCTCACTGATGCAGGAGGGGATTTGGAAGTGGCCAGAGCCCCGGTGACTATGGATCAGGTGGAGCAGGCCACGGCTCTCAGCCAGCTCCAAGGGACGGAGGCCCCATCCAAAGACACTCCACTAAGGGAGCATCTCTCTGAGAATCAGTCTGTctgggagatggagatggaggtggtgatggaggcaggcAGACAGCAAGCCCAGGAGTCTGACGAGGAGGAGACCGGTTACAATGCTGTAGGGGAGGACATCAACCcagaggaggaggcggaggaccTGAGAAGAGATGGAGTGGGTACATCACAAGATGGCTATGAGTGTGTTGTAGTGACCGCATCCTTAACTGACAGACTGGACAAAGCCAATGAGCAGGACACCACACAGACAATGGGTGACACAGTTGGTGTAGACACTCAGACCAACctccatccagtcccagcctctATGCAGGTGCCTGGGCAAGGGGAGCTGTTTGAATCTCAGACACTACAGACTGTGGGGACCACCTGTGAGATACCGGACCAGCGAGGAACTCTGGATGGTTCTCAGCTGATCATCATCACTGGCCCCAGCTATGAGGCTTTGGCATCCGAGGGTATCCAGCTCAACATGGGGGGtggagacgtggaggaggtcaCCTGCACTGTCATAGAGGGTGTGGCTTACAACCAAATGTGCCAATCAGTGGCAGACTTTAGGACGACAGAGGAAGAATCCATCACAgATATTTTTCTCTCAGGCCTCAGTGACAAGGAGCTGCTCCAGCCCAGTGTTGAGTCTCATGGCTTGGAGCCCACCTGTGAAAGGGAGCTACAGAGGGGCCTAAGCAGATGTAGAAGGAGCAGACGAGGTCCTGTCATCGAGGCAGACGGAATGCTCAAGATGTTCCACTGTCCGTATGAAGGCTGTAGTCAAGTCTATGTAGCCATCAGCAGCTTTCAGAACCATGTGAATCTGGTTcacaggaaggggaggaccaaggTGTGCCCCCACCCAGGCTGTGGCAAGAAGTTCTATCTGTCCAACCACCTGCATCGCCACATGATCATCCACTCAGGAGTCCGAGACTTCATCTGTGAAACATGTGGGAAATCGTTCAAAAGGAAGAATCACTTGGAGGTTCACCGGCGCACGCACACAGGGGAGACGCCCCTTCAGTGTGAGATCTGTGGGTACCAGTGTCGCCAGCGAGCATCTCTCAACTGGCACATGAAGAAACACACCCCCGAGGCCCACTACAACTTCACCTGCGAACACTGTGGCAAGAGGTTTGAAAAGCTTGACAGTGTTAAGTTCCACAAGTTAAAGAGCCACCCAGACAAACAGGCAACATAAGGCGCAGTGCTGCTGGAATGTGCACTAAATATCAACTGGTCAGGGTCAGACCAGAAAGGGACTGAATCTGTCGACACAGAGAAGAAGAGTGCCCGTAGAGACGGGTATGCCCTTTTGGGGAAAGAGCAGCTCTTTTGAATGAACATTGCTTAGACTCTCTCACTATAATGGACTTTAGAACCTGCTCTCAAAGCTGTGCTGGACACAGCCTTTTTAGAGCTCACAGAGGCAGCCTAGCTGTTGATATTGTACATTTCAGCACAGTTGTTTACATAATGTGCTGTACGcctctaaaccatactgtctctataccatATTATTAACATATCCATAGATTCTctctttttttattcatttttatacCCTTGTCATccacagttgtaatgtacttgttgggaaaaaatgtttttttttgttaattcttgtGTTCTCACGTCAGTACACGAACTGatgcctactggtaaaatgccaAAACTTACATATTCATGGGGAAATTATAATTGCATCTTGAGTAGTAATTGTAACAATGTGCATATGGATGTAAAGGACATGTCAATGGATTCAGAAAGAAGAGTTGTGTTGTCACACAAGTGGGCTGCCTACATTGAAATAGAGAATTGGTCATTTTTGTCATTGACCTGACCAAGGAGTAGTCTTTTTGTGTGAAAGTCTTGCATCATCGTTCAGGTCTGTCTGTTGAACTGTGTGTCTATGAACAGAGTGGTGTTGTATTGTGTACTAAAATGGCAAATGTCGTTTTTGAAAACCTTTTTTTCTAAAGATCCAAAGCAGAATCGCTAATTTATAGTCCTTTTCCTGTTTTCTGTATTACTGAAATGATCAATGTAAAATATGTGAATATGACCAAAATAGACTACATATTTATGGAAGAGACATTTGTTTGAgacaaatgtaaaataaaaaaaaggagTATTGTA
>XM_021558108.2
CAACAGACAGCTGTTGTCAAGATGGCGGATGActatggaggagaagagggtccCCTGGACGCTGAAGAAGCTGGGgatcaaataaaatcaattttgAGGCGTTGTAGAGGCCGTCCCAGGCTCACGGATTCTGACCGAGCACAAAGACGCCTCGAGTCCCGCAAGAAGTATGATGTTAGGCGAGTTTATCTTGGAGAATCTCACAAGGTTTGGAGTGAGCTTCGCCGGCGAACGAGTTTGAGTGACGCTGGACTTGCCGAGTACCTAATCCTGCTCAACTCCACGTACGGGGAGAGATACCAGCAAAAATACCGAGGGAAGACAGCCCCAGAAGTATGTACAAAACTGAAAAGAGGGAAAAATGAAAGAGTGTCTAGCCTTTGTAGCATGGTGACCTGGTACCAGGATCACTCCCAGACTTGCCCACATGAACCGCAGCTCAGAGCTCTGGAACCCCAACCTGGATTCTGCACCTCTGCTATCTGGCAGTGTGATGCTGACCATTCATTTGTGCAGCACCTCTCCTCACCACCAAGAGGGGCCAGTGAGCccgagatggagacagagacggaggaggaagTTGATAGTGACACAAGGACAGAGGATACCAGAGGAATCAtgaccaggaggaggaggagagagaccgaTGCCCACAGACAGCTCACTGATGCAGGAGGGGATTTGGAAGTGGCCAGAGCCCCGGTGACTATGGATCAGGTGGAGCAGGCCACGGCTCTCAGCCAGCTCCAAGGGACGGAGGCCCCATCCAAAGACACTCCACTAAGGGAGCATCTCTCTGAGAATCAGTCTGTctgggagatggagatggaggtggtgatggaggcaggcAGACAGCAAGCCCAGGAGTCTGACGAGGAGGAGACCGGTTACAATGCTGTAGGGGAGGACATCAACCcagaggaggaggcggaggaccTGAGAAGAGATGGAGTGGGTACATCACAAGATGGCTATGAGTGTGTTGTAGTGACCGCATCCTTAACTGACAGACTGGACAAAGCCAATGAGCAGGACACCACACAGACAATGGGTGACACAGTTGGTGTAGACACTCAGACCAACctccatccagtcccagcctctATGCAGGTGCCTGGGCAAGGGGAGCTGTTTGAATCTCAGACACTACAGACTGTGGGGACCACCTGTGAGATACCGGACCAGCGAGGAACTCTGGATGGTTCTCAGCTGATCATCATCACTGGCCCCAGCTATGAGGCTTTGGCATCCGAGGGTATCCAGCTCAACATGGGGGGtggagacgtggaggaggtcaCCTGCACTGTCATAGAGGGTGTGGCTTACAACCAAATGTGCCAATCAGTGGCAGACTTTAGGACGACAGAGGAAGAATCCATCACAgGCCTCAGTGACAAGGAGCTGCTCCAGCCCAGTGTTGAGTCTCATGGCTTGGAGCCCACCTGTGAAAGGGAGCTACAGAGGGGCCTAAGCAGATGTAGAAGGAGCAGACGAGGTCCTGTCATCGAGGCAGACGGAATGCTCAAGATGTTCCACTGTCCGTATGAAGGCTGTAGTCAAGTCTATGTAGCCATCAGCAGCTTTCAGAACCATGTGAATCTGGTTcacaggaaggggaggaccaaggTGTGCCCCCACCCAGGCTGTGGCAAGAAGTTCTATCTGTCCAACCACCTGCATCGCCACATGATCATCCACTCAGGAGTCCGAGACTTCATCTGTGAAACATGTGGGAAATCGTTCAAAAGGAAGAATCACTTGGAGGTTCACCGGCGCACGCACACAGGGGAGACGCCCCTTCAGTGTGAGATCTGTGGGTACCAGTGTCGCCAGCGAGCATCTCTCAACTGGCACATGAAGAAACACACCCCCGAGGCCCACTACAACTTCACCTGCGAACACTGTGGCAAGAGGTTTGAAAAGCTTGACAGTGTTAAGTTCCACAAGTTAAAGAGCCACCCAGACAAACAGGCAACATAAGGCGCAGTGCTGCTGGAATGTGCACTAAATATCAACTGGTCAGGGTCAGACCAGAAAGGGACTGAATCTGTCGACACAGAGAAGAAGAGTGCCCGTAGAGACGGGTATGCCCTTTTGGGGAAAGAGCAGCTCTTTTGAATGAACATTGCTTAGACTCTCTCACTATAATGGACTTTAGAACCTGCTCTCAAAGCTGTGCTGGACACAGCCTTTTTAGAGCTCACAGAGGCAGCCTAGCTGTTGATATTGTACATTTCAGCACAGTTGTTTACATAATGTGCTGTACGcctctaaaccatactgtctctataccatATTATTAACATATCCATAGATTCTctctttttttattcatttttatacCCTTGTCATccacagttgtaatgtacttgttgggaaaaaatgtttttttttgttaattcttgtGTTCTCACGTCAGTACACGAACTGatgcctactggtaaaatgccaAAACTTACATATTCATGGGGAAATTATAATTGCATCTTGAGTAGTAATTGTAACAATGTGCATATGGATGTAAAGGACATGTCAATGGATTCAGAAAGAAGAGTTGTGTTGTCACACAAGTGGGCTGCCTACATTGAAATAGAGAATTGGTCATTTTTGTCATTGACCTGACCAAGGAGTAGTCTTTTTGTGTGAAAGTCTTGCATCATCGTTCAGGTCTGTCTGTTGAACTGTGTGTCTATGAACAGAGTGGTGTTGTATTGTGTACTAAAATGGCAAATGTCGTTTTTGAAAACCTTTTTTTCTAAAGATCCAAAGCAGAATCGCTAATTTATAGTCCTTTTCCTGTTTTCTGTATTACTGAAATGATCAATGTAAAATATGTGAATATGACCAAAATAGACTACATATTTATGGAAGAGACATTTGTTTGAgacaaatgtaaaataaaaaaaaggagTATTGTA

Function

NR:

description
zinc finger protein 653-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558107.2 False 2933 mRNA 0.48 10 44016590 44021722
XM_021558108.2 True 2918 mRNA 0.48 10 44016590 44021722

Neighbor

gene id symbol gene type direction distance location
tspan35 LOC106601289 coding downstream 5911 43998452 ~ 44010679 (-)
zgc:158403 LOC106601368 coding downstream 24342 43977147 ~ 43992248 (-)
LOC110486474 LOC106601192 coding downstream 68125 43764967 ~ 43948465 (-)
LOC118938309 LOC106601194 coding downstream 263287 43752130 ~ 43753303 (-)
LOC110486471 LOC106595933 coding downstream 265888 43747528 ~ 43750702 (-)
epor LOC106601362 coding upstream 2331 44024053 ~ 44029014 (-)
rab3db LOC106601190 coding upstream 8233 44029955 ~ 44043512 (-)
LOC110486485 LOC106596625 coding upstream 23178 44044900 ~ 44047797 (-)
LOC110486482 cnn1 coding upstream 31575 44053297 ~ 44067701 (-)
tlcd4b LOC106601359 coding upstream 50717 44072439 ~ 44087652 (-)
G1177897 NA non-coding downstream 1740 44014572 ~ 44014850 (-)
G1177719 NA non-coding downstream 20628 43995754 ~ 43995962 (-)
G1177707 NA non-coding downstream 43235 43973148 ~ 43973355 (-)
G1177643 NA non-coding downstream 136249 43877142 ~ 43880341 (-)
G1177641 NA non-coding downstream 138122 43875226 ~ 43878468 (-)
G1177907 LOC100136012 non-coding upstream 42429 44064151 ~ 44064964 (-)
LOC110486490 NA non-coding upstream 94318 44116040 ~ 44118663 (-)
G1177962 NA non-coding upstream 150834 44172556 ~ 44173125 (-)
G1177987 NA non-coding upstream 184360 44206082 ~ 44206443 (-)
G1177988 NA non-coding upstream 184737 44206459 ~ 44206676 (-)
G1177709 LOC106601291 other downstream 42533 43973539 ~ 43974057 (-)
G1177552 NA other downstream 400582 43601363 ~ 43647736 (-)
G1177238 LOC106607096 other downstream 601487 43414159 ~ 43415103 (-)
G1177175 NA other downstream 654236 43352501 ~ 43362354 (-)
G1178281 NA other upstream 441232 44462954 ~ 44463226 (-)
LOC110485184 LOC106601341 other upstream 461900 44467268 ~ 44545484 (-)
G1178286 LOC106607023 other upstream 491714 44513436 ~ 44530531 (-)
G1178763 LOC106607027 other upstream 631350 44653072 ~ 44653468 (-)

Expression


Co-expression Network