LOC110486482 (cnn1)


Basic Information

Item Value
gene id LOC110486482
gene name cnn1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44053297 ~ 44067701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558111.2
TGAGAAACGTGTTGCAGAGTGGTCCACAGCCTCACCAGAGCGAGCAAGAACGTTACAGAATCTGAATACTCCTGCAACATCCGCGGGTCTGTCATATCAATTGGAGTCCAGGGAGAAAGAGGACTTTGCTGTGGGTTTTCTCGTGCCAGGATAGAGGGGTGTATTTCACCATTTTTAAATATCCTCTGTGAATAATCAAAGATAACTATGTCAAAGAATTTCAAAGGTGGACCATCCTTCGGACTTTCTGCCGAGGTCAAAAGTAAGTTGGCCCAGAAGTATGACCCCCAGAAGGAGGAGGAGCTGAGGCTGTGGATCCAGGACGTAACAGGCAAGAAGATCGCTGATCCTTTCATGGAGAACCTAAAGGATGGGGTCATCTTGTGCGAACTTATCAACACACTTCAGCCAGGATCTGTGAGAAAGATTAACACTTCCCCTCAAAACTGGCATCAGCTGGAAAACATTGGCAATTTTGTCCGAGCTATCACAGTTTATGGTATGAAGCCATACGATTTGTTTGAGGCCAACGACCTGTTTGAGAATACCAACTACACCCAGGTCCAGAGCACGCTCATCACCCTGGCTGGAATTGCCCAGTCCAAAGGTTTCCACTCCAAGCATGACATGGGAGTGAAGTATGCAACAGCACACCAGCGCCGTTTCGCCCCAGACATGCTGAAGGAAGGGCGCAATGTCATCGGCCTGCAGATGGGTACCAACAAACTTGCCAGCCAGAAGGGCATGACATCTTATGGCACGCGGCGTCACCTGTATGACCCGAGGGGGGGAATGGAGAACCCTCTGGACCAGTCCACCATCAGCCTCCAGATGGGCACCAATAAGGGTGCCAACCAGTCTGGCATGACGGCCCCTGGCACCAGGAGACACATCTATGACAAGAGTCTGGGCTTGGAGGAATGCGACACCTCCACCGTTTCACTGCAGATGGGCACCAACAAGATGGCGTCCCAGCAGGGCATGACCACATACGGCCTCCCTCGGCAGGTCTACGACAACAAGTACTGCTCCAACCCTGATGAATTCGTCAACAACGGAGAGAGGGCTGAGTTTGACGGTACTATGTACTATGACTAAAGAGAACAGAATAACCCCAGTCCCCTCCTCTCAAGAACCCCTCTCCACCAGCAAGACCACCCaaactgttatttactgtttccATTATTCTCGTCCcttgctgtttttttttgttgtgatCAACCATTCAAATCATTTTTGTCCTTTGAGGGGATTCATGCCTGGTTCAATCTCTTTGACCTTGTTATTTTAAATCACTTTAATGTAGTGGcccacacccctctctccctttgcAATGGAGATTTTTCTATTCAAATACGGTGAAAATAAATACTAAGAGATACTAATAATGTCAAGAGACCCATTCCTTAATCAATCTTATTGTaatgtcatttttttattttttttatttttatagtttataaaaatgtatattttcagtTGTAGATCCCCCATCCAGCTTAAACATTGAGAATATAGGAAAAAGTTCCTTGAATGGAAAGAAGTGACCGACATGTTGCTGTTAACCTTTAACCCCTGAGGAACAGGAGTccgctctgggattcaatccctCGGGGCCCACAGAATCAGACGGAGTCTTCCAGGACACAGGGACATGGACTAAAAACTTTGATCAGATGTATTCCTTATGACTTTGCCTGTGTATGCACGTCTGCACTGCGCTGACACCCTGCTCTAGCTCACAGGACTGCCAACCAGCCATTTTATACCACAGATGGATTTTTTTATCTAGTATTCTTTAAATCATTAGAAGATCAGTAGTAGGGTTCTCAAACCTGATACTTGAATTAATGTAAGCCCCTAAAGGCATCGTGAAAAGCCAATAGATTTTAATATTTTTTGTATTATAAGCAGTATTCACACTTCATTAGTGATAAACAATGCAGAATCAATTTTAGCCATTGTGCCAGCTATGTTAATGTGGATGTCACATAGGCCAGTTTGCATGAGACAAGTTATAATCCCTCTATAGTTTCCATGTCACACAGCTTTAATATATTGCTGCGCTATTTGCACTTTGCATCACCTTGTTGAATATGTACATGGATAGAATTACTTATGACTAGAAGGCAGACAAGCCAGGTCGTTGAGAGATCCATAACATCTGCACGCTGTTATACACGAGATAACGGTCTAATTATTGTCCACTTAGTCATAGCTCAATACAGCAGACCCTGTATCACTAACTACTACATGATATGGGGTACCCACCACAGATCTTGAATGTAATGTGATTTTGAGCACTGCAAGATGTGACTGTCATTCTGTGGATTCATTAATCACCTTGTACCAGCAGTCGCAAATGAATAACATAAGTTTGCAACATATTTATGCTTGGGATAATGTAGCCTAGCACAGCTGCTAATGGTTTAAACATTAAACTGTGCATGCTTGACCAAACCTTTGAAAAGCAGGCTTGTTTGCTTGCTAAGAGGTTTGTTCAAGATCATGTCTTGCACCTGGAACGTTCCACAGAACACATCTCTATGCCTTGCATGCTCATGTACAAAGCATGGATTGGTTATGCCTTGTCCACAGACTGCTTACAGTAAGGAAAACAATGTAATTTTTAAAGTTGGGTTTACAATCCATTTAAGTTAAATTTGAAAGGTCTTGATATCAGTTACTGGgcagtattgtaatgtttttttaaataggaGGTATTGGAGATAAATCTACATAAAATATTGAGTCCCTCCTGAGGTTCTGACCTCTGGAATTTATAGTGATGATTTGTCAAACTTTTGAAGGCTTAATACTTTAATTAAAGGGAACATCGTTTGATGCTGAGCCCGTAATAATCTGAAGGCCATGTTGCATTTTCCCCCCTACATTAGTGTGCCATCTAGTGTTTTGAAATCCCTTTAACATTTGGAGAAAAAAACAGACTACATTCCACAGACTTAAGATAAAAG

Function

symbol description
cnn1 Predicted to enable actin binding activity. Involved in negative regulation of vascular associated smooth muscle cell proliferation. Located in cytoskeleton.

NR:

description
calponin-1-like

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558111.2 True 2975 mRNA 0.43 7 44053297 44067701

Neighbor

gene id symbol gene type direction distance location
LOC110486485 LOC106596625 coding downstream 5500 44044900 ~ 44047797 (-)
rab3db LOC106601190 coding downstream 9785 44029955 ~ 44043512 (-)
epor LOC106601362 coding downstream 24283 44024053 ~ 44029014 (-)
LOC110486478 LOC106601191 coding downstream 31575 44016590 ~ 44021722 (-)
tspan35 LOC106601289 coding downstream 42618 43998452 ~ 44010679 (-)
tlcd4b LOC106601359 coding upstream 4738 44072439 ~ 44087652 (-)
LOC110486490 NA coding upstream 48339 44116040 ~ 44118663 (-)
LOC110486489 LOC106607084 coding upstream 53654 44121355 ~ 44169150 (-)
LOC110485183 LOC106607072 coding upstream 154832 44222533 ~ 44224572 (-)
LOC110486496 LOC106607078 coding upstream 227875 44295576 ~ 44311575 (-)
G1177897 NA non-coding downstream 38447 44014572 ~ 44014850 (-)
G1177719 NA non-coding downstream 57335 43995754 ~ 43995962 (-)
G1177707 NA non-coding downstream 79942 43973148 ~ 43973355 (-)
G1177643 NA non-coding downstream 172956 43877142 ~ 43880341 (-)
G1177641 NA non-coding downstream 174829 43875226 ~ 43878468 (-)
G1177962 NA non-coding upstream 104855 44172556 ~ 44173125 (-)
G1177987 NA non-coding upstream 138381 44206082 ~ 44206443 (-)
G1177988 NA non-coding upstream 138758 44206459 ~ 44206676 (-)
G1177981 NA non-coding upstream 142886 44210587 ~ 44210913 (-)
zgc:158403 LOC106601368 other downstream 69730 43977147 ~ 43992248 (-)
G1177709 LOC106601291 other downstream 79240 43973539 ~ 43974057 (-)
G1177552 NA other downstream 437289 43601363 ~ 43647736 (-)
G1177238 LOC106607096 other downstream 638194 43414159 ~ 43415103 (-)
G1178281 NA other upstream 395253 44462954 ~ 44463226 (-)
LOC110485184 LOC106601341 other upstream 415921 44467268 ~ 44545484 (-)
G1178286 LOC106607023 other upstream 445735 44513436 ~ 44530531 (-)
G1178763 LOC106607027 other upstream 585371 44653072 ~ 44653468 (-)
G1178765 LOC100380669 other upstream 660875 44725639 ~ 44731351 (-)

Expression


Co-expression Network