LOC110486499 (syfa)


Basic Information

Item Value
gene id LOC110486499
gene name syfa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44360414 ~ 44370469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558132.2
CTCATCCTCAGTCGCAATGCAGTCACTGTCAGTACATTGCATGGGATATGCATGGGATAAATCATGTGTGTAGcggatttttttttattcttcaagaTGTCAATTCAGATATTAATTTTCGCTTGTTCTAAGGAGTTTACGGTATTTCCAAAATACTGGCGCTTGTATTCCAGTACTTTCGACATATCCAATACTGAGCTCACTACCGGTCTCTTTTCGGCTTCGCTGTGATTAGCATGGCTGACACTGGTCTTGTAGAAACGCTTCTTCGGCGGGTGGAAAAGGTGGACGGTGGTCTCGACAGTCAGGATGTTGCGACCAGTCTCGGGGTGGACCACCAAGCTATCGTCGGTGCTGTGAAGAGCCTACTGGCACTTGGTGATGTGATCTCAGCTGAGCAGCGCTCCTCGAAGCACTGGGAGCTGACTGGGGAAGGCTGTGAGATAGCCGAACAGGGCAGCCATGAGGCCCGAGTTGTCAGCTCCATCCCAGAGGAAGGGATGCCTCAGAGCCAGCTCATGAAACTAGCCTTTGGGAAGGTGGGTTTCAGCAAGGCCATGTCCAACAAGTGGATCCGTCTGGACAAGGGCCACGAGGGCGGACCCAGGATCTTCAAGACTgtggaGCACTTAGAAGACTTGGTGAGGGACAAGTTGCTCCTGGTACAGAAAGGCCAGGCATCTCaactggaggagaaggagaagaatgaGCTGAAGAAACGCAAACTGCTCTCTGAAGTGACGGTCAAGTCCTATTGGATCACAAAGGGCAGCTGTTTCAGCACCACCATCACTAAGCAGGAGACAGAGCTCACCCCAGAGATGATCGCTAGTGGGAGCTGGAAGGAGAAGAAGTTCAAGCCTTATAACTTTGAGGCCTTGGGTGTGGCCCCAGACTGTGGCCACCTGCATCCGCTCATGAAGGTCCGCACGCAGTTCAGACAGATCTTCCTGGAGATGGGCTTCACTGAGATGCCCACCAACAACTTCATTGAGAGCTCCTTCTGGAACTTTGACTCCCTGTTTCAGCCCCAGCAGCACCCAGCCAGGGACCAACACGACACCTTCTTCCTGTCTGACCCAGCTCAGGCCCATGAGTTTCCCCAGGACTACctggagagagtgaggaaggTCCATTCAGAGGGAGGCTTTGGATCACAGGGgtaCAAGTATGACTGGAAGATTGAGGAGGCTCAGAAGAACATCCTCCGTACTCACACCACAGCAGTCAGCGCTCGCATGCTGTACAAACTCGCTCAGCAGGAAAAGTTCACCCCTGTCAAGTACTTCTCCATCGACAGAGTATTCCGTAATGAAACTCTGGATGCCACCCACTTGGCAGAGTTTCACCAGATTGAGGGAGTGGTGGCTGACTATGGCCTTACCCTGGGTGACCTCATGGGTATCCTTCATCAGTTTTTCAATAAACTAGGAATCACCAAATTACGCTTTAAACCGGCCTACAATCCATACACCGAGCCGAGCATGGAAGTGTTCAGCTATCATGAAGGACTGAAGAAGTGGGTGGAGGTGGGAAACTCTGGGATGTTCAGGCCAGAGATGCTGCTGCCTATGGGGCTCCCTGAGGGGGTGACGGTCATCGCCTGGGGGCTGTCTCTGGAGAGGCCCACCATGATCAAGTATGGCATCAACAACATTCGTGAGCTGGTGGGACACAAGGTCAACCTGCAGATGGTCTACGACAGCCCTGTGTGTCGACTGGACTCTTAGATTCTGTTCAGGCTTCCTCTTGGAGAGGCTCACATTACCATACACATCCCACCCAAGGCCTGTGTCATCAGGACCCCTTTTCCCACTAGCAACCATATGAACACTGAACAATCCCACAAACCCTTAATCTACCTTGGCCAGAGACAGATCTGTCTGtttgagagggagggaaagaggactTACTTTTCTTCTTATAGCTTGTCTGTGGTTCTAGCTGGATTATTGCCGTTGTTTAGCCACGCGATACACAGATTATACTTTAAACCTAATTTATGAAACAGTTATAACTCATCTTTGGTCCTAACCAGCAGCTATGCATGTGCTGAGGGGTAGGTAGTGCTATTACTCTGTTCTCTGCTGATGTGAGCACTACATCAGAGCATAAGGAACTTCACCAGTGAGTCTGTTTTTTAATTTAAACGTTAGGTAGCCGCTGTGCAGTTTTCTATGTAATGAAATGCTTGTACAGTAAAGATGCTAACTTGAAGCCCTTTAGCCTTCCATACAAAACCAACCAACTCTGTGCTGTGTCCACTCAGTTCATGAGACAAATTAGAAATGGTCAAATAAAGATGTTTGAAAGGAGCACGATTTACGTCGTCGGTTTAATGTAATCCCCATTGGTAATGCTGAGTTTTTGTTATTCTACTCTGGCTGTGCCAGGTCTGGTTTTAAACCGGTCAGAAGAACATTCTTGTTTTCCTCAATCTTGTGGCTGGTGCGTAACGTGGATTGGCGTGTTGAGTGATGTGTGCCAAGGTTTAACCCAGAGGATTTAGGAGTTATTTGTGTCATTCCAGTGAAGGTGGGATTACGAATCACCTTTATCGCCTCTAAGACTCATGTCATCGTACACAGGGTAGACTTTTAGCTCTGTGTGCTCACAGGAGATAATTGGGTTAACACATTAGAGCACTTTGGTTGTAAGTGTAACCTAAAATAACTTTAATATTGTACTAAATAAAGAGTCAAGTCTATTCCTGTTAGTTTGTTTTAGGCAACGGCACGTTGGATATGTTTTTTGCTGGTAGCCTAGTTCATCCCCAATCTCTGCAAGATTCTGAATAAATTTACTGTTGCAAAGAGA

Function

NR:

description
phenylalanine--tRNA ligase alpha subunit

GO:

id name namespace
GO:0006432 phenylalanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0000049 tRNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004826 phenylalanine-tRNA ligase activity molecular_function

KEGG:

id description
K01889 FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558132.2 True 2817 mRNA 0.48 13 44360414 44370469
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110486497 LOC106601353 coding downstream 17487 44320001 ~ 44342927 (-)
LOC110486496 LOC106607078 coding downstream 48839 44295576 ~ 44311575 (-)
LOC110485183 LOC106607072 coding downstream 135842 44222533 ~ 44224572 (-)
LOC110486489 LOC106607084 coding downstream 191264 44121355 ~ 44169150 (-)
LOC110486490 NA coding downstream 242171 44116040 ~ 44118663 (-)
LOC110486500 LOC106601349 coding upstream 6972 44377441 ~ 44397427 (-)
LOC110486501 LOC106607073 coding upstream 28608 44399077 ~ 44413719 (-)
LOC110485184 LOC106601341 coding upstream 96799 44467268 ~ 44545484 (-)
LOC110486503 LOC106601345 coding upstream 118479 44488948 ~ 44498025 (-)
LOC110485185 LOC106607026 coding upstream 254780 44625249 ~ 44627425 (-)
G1178229 NA non-coding downstream 7720 44351297 ~ 44352694 (-)
G1178224 NA non-coding downstream 16753 44343419 ~ 44343661 (-)
G1178039 NA non-coding downstream 76701 44283510 ~ 44283713 (-)
G1178035 NA non-coding downstream 81602 44278370 ~ 44278812 (-)
G1178030 NA non-coding downstream 87141 44273061 ~ 44273273 (-)
G1178235 NA non-coding upstream 342 44370811 ~ 44371246 (-)
G1178241 NA non-coding upstream 27867 44398336 ~ 44398695 (-)
G1178253 NA non-coding upstream 50187 44420656 ~ 44420870 (-)
G1178255 NA non-coding upstream 52912 44423381 ~ 44423949 (-)
G1178261 NA non-coding upstream 62267 44432736 ~ 44433404 (-)
epor LOC106601362 other downstream 331429 44024053 ~ 44029014 (-)
zgc:158403 LOC106601368 other downstream 376847 43977147 ~ 43992248 (-)
G1177709 LOC106601291 other downstream 386357 43973539 ~ 43974057 (-)
G1177552 NA other downstream 744406 43601363 ~ 43647736 (-)
G1177238 LOC106607096 other downstream 945311 43414159 ~ 43415103 (-)
G1178281 NA other upstream 92485 44462954 ~ 44463226 (-)
G1178286 LOC106607023 other upstream 142967 44513436 ~ 44530531 (-)
G1178763 LOC106607027 other upstream 282603 44653072 ~ 44653468 (-)
G1178765 LOC100380669 other upstream 358107 44725639 ~ 44731351 (-)

Expression

LOC110486499(syfa) Expression in all Baseline Samples

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LOC110486499(syfa) Expression in each Bioproject

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LOC110486499(syfa) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network